Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0002257

Physical Location & Seq

Genomic Coordinates Forward (+)

13886842 .. 13889991

Gene Structure 3150 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022874

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1764 bp

ATGTTGATGATTCCAAGCCTTGAAGCTTGCAAGAAGAGGAAGCGAAGGTCAAAGGTTTATGGGTTTCATTCATTTGGGGAACCCGGCTACCCAATTCTTGCACAGGGCCCATTTCGTGATAACATTCGTCTGTTTCTTCAACAATGTGCAGAGCTCGAGAGTTACATTGTTCAGGGCATGCCCATTTGGTGCACTCTTCTTGTTCATGACAACCGAAGCCTTGTTCTTCCCATCTACACCATTGCAGAGAACGTCAAGACCTCTGACACCCCCTTCTGCGATCACTGCCAATGCACTGCTTACTTCTCAGCTTCCTGGTTGGGACATGACATGTTGTTATTGTTGTTAAGGAAAATCACAGTCGAAGATGTCTCAAAGAAGTGGTCCATGGAACTTCGCCTGCTCCATGGAGTTGCTTATGGGCATCCTTGGTTTGGTAGATGGGGTTACAAATTTTGCCATGGAAGCTTTGGGATCATCCAAGATTTTAGTGACATGGACCAGTGTGAAGAGCTGAAGAAAATTGTTCGTTACTACAGATATTTGAGTGAAACACAGTTAGTTACTATCAAAGATCTTCTCAGATTTATGCTTACTGTTAAGGCTTGCTTTCCTGCACAGAGAAACTCGCTACCTCTTACTGCAAAACCTGCAGATGTGAATGTGATTGAGAATGCAAAACCTGCAACCAGAGAATCCATCAAGATCAAGCCTCAGATAAAGGAAAAGTCTTCAAAGTATAGGAAGTTTGCTACTGTTGTTTCTCACATGGATAGCAGATGGCCTGCCAGAAGACTAGAGTTTGCAGCAGATGTGATTGTGAATGCACTGAAAGAAAAGAAAGAGAAGGACTTGAGAAATGGTGGGATGGCCCGGCAAGATGTGCGAGAGGCAGCTAGGTTGCATATTGGAGATACAGGTTTGTTGGATTATCTGTTGAAATCACAGAACAATGTGGTTGTTGGGAATCAGGTTGTCTGCCGTTCAGTGAACCCAACCACTTGGATTTTGGAATATACGGTTCATGATCTTAATGATGGGGATAAAGTATCTGAACCTGAGAAAGAGATACTTCCCCTACCCCCTCGATCAGCAGCTCCAGTTCCTGGAATTGACGTTTCCAGTGATGTTCTTTATTTGTATGAGCATGTACTGTTGGGATATCCAGAATCTGGATTAGTAGAGTTGGCTACACAACCAGTATTGGACACTAAGCACTTTGTAAAGGAATGTCCATTTAGGGATGAGAAAGAGCAGTTACTGACATTATTTTGCCAAATCTTGCCAAGTTTGACTGATAAGGAAATTGAATTCAAGAGGGAGTTGCCTCCAGGTGAGATAGTGGTGATGCCGCTGGATGCAACTGTTGGAGAGCTAAAGCAGGAAGCTGAGAAACAGTTTTTGCTGATGGAAATCAAGGGCTTGGAGGAATCAGATGATATGGATGTGCTTTCTGGAGCAGTTCAATCGGGGACAGGGGTTGGAGTGAGAGGGAGTGGGATAGATTTAGACACACCACTTAGGTACCAAGGGGGATCAGACACATGGATGGTGAGATGTGAATGTGGGGCTACAGATGATGATGGTGAAAGGATGGTGGCCTGTGATATATGCGAAGTGTGGCAGCATACACACTGCTGTGGAATGCAGGATGCTGATGAAGTCCCACGTCTGTTCATTTGCTCAACATGTTACGTTTCACTTGTTCCCCCTAAAACTGAACCTGCATTTAGATTTGACTGTTCCACTGCTTTTCTGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000212 GO:0000226 GO:0000228 GO:0000280 GO:0000785 GO:0000790 GO:0000791 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005719 GO:0006323 GO:0006355 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007059 GO:0007060 GO:0007140 GO:0007275 GO:0007276 GO:0008134 GO:0008150 GO:0009555 GO:0009889 GO:0009987 GO:0010032 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0030154 GO:0030261 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0033613 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044703 GO:0045132 GO:0048229 GO:0048232 GO:0048235 GO:0048285 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0051321 GO:0051704 GO:0055046 GO:0060255 GO:0065007 GO:0070013 GO:0070192 GO:0071103 GO:0071840 GO:0080090 GO:0097159 GO:0098813 GO:0140013 GO:1901363 GO:1903046 GO:1903506 GO:1990188 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD

Protein Analysis

588

Amino Acids

66.47

Weight (kDa)

5.66

Isoelectric Point (pI)

42.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_plant_repro	PF25874	260 - 343	5.4e-32	Winged helix-turn-helix domain in plant reproductive proteins
Ubiquitin_At1g33420	PF25565	418 - 500	6.8e-16	At1g33420-like, ubiquitin-like domain
PHD	PF00628	520 - 564	9.9e-06	PHD-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002257)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66170
fragaria_vesca	FvH4_1g29990 FvH4_1g29990 FvH4_1g29990 FvH4_6g02390
malus_domestica	MD09G1267100.v1.1 MD17G1254900.v1.1 MD17G1255100.v1.1 MD17G1260200.v1.1
prunus_persica	Prupe.3G164800_v2.0.a1
pyrus_communis	pycom12401g00150 pycom461g00270
rosa_chinensis	RchiOBHm_Chr3g0450161 RchiOBHm_Chr3g0492331
rosa_laevigata	RLG00000022781 RLG00000022872 RLG00000022874 RLG00000022875 RLG00000025750
rosa_multiflora	Rmu_co8200976.1_g000001 Rmu_sc0003156.1_g000026 Rmu_sc0010184.1_g000005 Rmu_sc0010184.1_g000015 Rmu_sc0020297.1_g000001
rosa_roxburghii	Rroxscaffold_3G00226630 Rroxscaffold_6G00392410 Rroxscaffold_6G00427920
rosa_rugosa	Rorug02G0625900 Rorug03G0253300
rosa_samantha	Rh2AG397300 Rh2CG383900 Rh3AG025300 Rh3AG303200 Rh3BG025900 Rh3BG339200 Rh3BG339300 Rh3CG024800 Rh3CG336400 Rh3DG025900 Rh3DG327500 Rh3DG338500
rosa_wichuraiana	Rw3G002030 Rw3G026750

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	658, 691, 1732
Acc65I	GGTACC	1 cut(s)	1524
AccB1I	GGYRCC	1 cut(s)	1524
AccB7I	CCANNNNNTGG	2 cut(s)	1106, 1172
AciI	CCGC	1 cut(s)	1352
AclWI	GGATC	2 cut(s)	482, 1543
AcsI	RAATTY	2 cut(s)	452, 1310
AcuI	CTGAAG	1 cut(s)	536
AfaI	GTAC	2 cut(s)	1152, 1526
AfiI	CCNNNNNNNGG	3 cut(s)	434, 1106, 1172
AflIII	ACRYGT	2 cut(s)	330, 1688
AgsI	TTSAA	7 cut(s)	23, 140, 735, 940, 1310, 1315, 1466
AjiI	CACGTC	1 cut(s)	1670
AjnI	CCWGG	3 cut(s)	314, 1105, 1330
AleI	CACNNNNGTG	1 cut(s)	1638
AluBI	AGCT	9 cut(s)	26, 154, 311, 468, 514, 896, 1097, 1375, 1388
AluI	AGCT	9 cut(s)	26, 154, 311, 468, 514, 896, 1097, 1375, 1388
Alw21I	GWGCWC	2 cut(s)	156, 194
Alw26I	GTCTC	1 cut(s)	376
Alw44I	GTGCAC	1 cut(s)	190
AlwI	GGATC	2 cut(s)	482, 1543
AlwNI	CAGNNNCTG	3 cut(s)	1106, 1172, 1261
Ama87I	CYCGRG	1 cut(s)	155
AoxI	GGCC	4 cut(s)	106, 782, 870, 1599
ApaI	GGGCCC	1 cut(s)	110
ApaLI	GTGCAC	1 cut(s)	190
ApeKI	GCWGC	4 cut(s)	806, 893, 1094, 1624
ApoI	RAATTY	2 cut(s)	452, 1310
ArsI	GACNNNNNNTTYG	2 cut(s)	368, 400
Asp718I	GGTACC	1 cut(s)	1524
AspS9I	GGNCC	5 cut(s)	106, 107, 384, 499, 871
AsuC2I	CCSGG	2 cut(s)	84, 874
AsuHPI	GGTGA	4 cut(s)	1346, 1357, 1564, 1598
AvaI	CYCGRG	1 cut(s)	155
AvaII	GGWCC	2 cut(s)	384, 499
BaeGI	GKGCMC	2 cut(s)	110, 194
BaeI	ACNNNNGTAYC	2 cut(s)	1508, 1541
BanI	GGYRCC	1 cut(s)	1524
BanII	GRGCYC	2 cut(s)	110, 156
BbsI	GAAGAC	2 cut(s)	723, 799
Bbv12I	GWGCWC	2 cut(s)	156, 194
BbvI	GCAGC	4 cut(s)	818, 905, 1106, 1636
BceAI	ACGGC	1 cut(s)	966
BcgI	CGANNNNNNTGC	2 cut(s)	1449, 1483
BciT130I	CCWGG	3 cut(s)	316, 1107, 1332
BcnI	CCSGG	2 cut(s)	84, 874
BcoDI	GTCTC	1 cut(s)	376
BfaI	CTAG	2 cut(s)	797, 897
BfmI	CTRYAG	3 cut(s)	535, 651, 1572
BfuAI	ACCTGC	3 cut(s)	658, 691, 1732
BglII	AGATCT	1 cut(s)	574
BisI	GCNGC	5 cut(s)	807, 894, 1095, 1352, 1625
BlsI	GCNGC	5 cut(s)	808, 895, 1096, 1353, 1626
Bme1390I	CCNGG	5 cut(s)	84, 316, 874, 1107, 1332
Bme18I	GGWCC	2 cut(s)	384, 499
BmeT110I	CYCGRG	1 cut(s)	155
BmgBI	CACGTC	1 cut(s)	1670
BmgT120I	GGNCC	5 cut(s)	106, 107, 384, 499, 871
BmiI	GGNNCC	3 cut(s)	81, 108, 1526
BmrFI	CCNGG	5 cut(s)	84, 316, 874, 1107, 1332
BmsI	GCATC	4 cut(s)	433, 1338, 1348, 1642
BpiI	GAAGAC	2 cut(s)	723, 799
BpmI	CTGGAG	3 cut(s)	1083, 1314, 1476
BpuEI	CTTGAG	1 cut(s)	874
BpuMI	CCSGG	2 cut(s)	84, 874
BsaBI	GATNNNNATC	1 cut(s)	1412
BsaJI	CCNNGG	5 cut(s)	387, 406, 428, 460, 1528
Bsc4I	CCNNNNNNNGG	3 cut(s)	434, 1106, 1172
Bse1I	ACTGG	4 cut(s)	502, 1100, 1122, 1199
Bse3DI	GCAATG	1 cut(s)	240
Bse8I	GATNNNNATC	1 cut(s)	1412
BseBI	CCWGG	3 cut(s)	316, 1107, 1332
BseDI	CCNNGG	5 cut(s)	387, 406, 428, 460, 1528
BseGI	GGATG	9 cut(s)	424, 477, 873, 1249, 1363, 1450, 1554, 1599, 1657
BseJI	GATNNNNATC	1 cut(s)	1412
BseLI	CCNNNNNNNGG	3 cut(s)	434, 1106, 1172
BseMI	GCAATG	1 cut(s)	240
BseMII	CTCAG	5 cut(s)	321, 595, 728, 1050, 1380
BseNI	ACTGG	4 cut(s)	502, 1100, 1122, 1199
BseSI	GKGCMC	2 cut(s)	110, 194
BseXI	GCAGC	4 cut(s)	818, 905, 1106, 1636
BsgI	GTGCAG	2 cut(s)	168, 600
BshFI	GGCC	4 cut(s)	108, 784, 872, 1601
BshNI	GGYRCC	1 cut(s)	1524
BsiHKAI	GWGCWC	2 cut(s)	156, 194
BsiHKCI	CYCGRG	1 cut(s)	155
BsiSI	CCGG	2 cut(s)	84, 874
BslFI	GGGAC	3 cut(s)	336, 1486, 1649
BslI	CCNNNNNNNGG	3 cut(s)	434, 1106, 1172
BsmAI	GTCTC	1 cut(s)	376
BsmFI	GGGAC	3 cut(s)	336, 1486, 1649
BsmI	GAATGC	3 cut(s)	679, 829, 1650
BsnI	GGCC	4 cut(s)	108, 784, 872, 1601
BsoBI	CYCGRG	1 cut(s)	155
Bsp120I	GGGCCC	1 cut(s)	106
Bsp1286I	GDGCHC	3 cut(s)	110, 156, 194
Bsp143I	GATC	7 cut(s)	280, 474, 574, 705, 1027, 1088, 1535
Bsp19I	CCATGG	3 cut(s)	387, 406, 460
BspACI	CCGC	1 cut(s)	1352
BspANI	GGCC	4 cut(s)	108, 784, 872, 1601
BspCNI	CTCAG	5 cut(s)	320, 594, 727, 1051, 1381
BspHI	TCATGA	2 cut(s)	205, 1024
BspLI	GGNNCC	3 cut(s)	81, 108, 1526
BspMAI	CTGCAG	1 cut(s)	655
BspMI	ACCTGC	3 cut(s)	658, 691, 1732
BspPI	GGATC	2 cut(s)	482, 1543
BspQI	GCTCTTC	1 cut(s)	504
BspT107I	GGYRCC	1 cut(s)	1524
BsrDI	GCAATG	1 cut(s)	240
BsrI	ACTGG	4 cut(s)	502, 1100, 1122, 1199
BssECI	CCNNGG	5 cut(s)	387, 406, 428, 460, 1528
BssMI	GATC	7 cut(s)	280, 474, 574, 705, 1027, 1088, 1535
BssT1I	CCWWGG	5 cut(s)	387, 406, 428, 460, 1528
Bst2UI	CCWGG	3 cut(s)	316, 1107, 1332
Bst4CI	ACNGT	9 cut(s)	361, 558, 598, 757, 1021, 1155, 1366, 1398, 1742
Bst6I	CTCTTC	3 cut(s)	29, 201, 504
BstAPI	GCANNNNNTGC	3 cut(s)	650, 683, 883
BstC8I	GCNNGC	5 cut(s)	28, 179, 401, 607, 786
BstDEI	CTNAG	7 cut(s)	307, 581, 714, 1059, 1212, 1389, 1520
BstDSI	CCRYGG	3 cut(s)	387, 406, 460
BstF5I	GGATG	9 cut(s)	424, 477, 873, 1249, 1363, 1450, 1554, 1599, 1657
BstKTI	GATC	7 cut(s)	283, 477, 577, 708, 1030, 1091, 1538
BstMAI	GTCTC	1 cut(s)	376
BstMBI	GATC	7 cut(s)	280, 474, 574, 705, 1027, 1088, 1535
BstMWI	GCNNNNNNNGC	5 cut(s)	285, 465, 650, 683, 883
BstNI	CCWGG	3 cut(s)	316, 1107, 1332
BstNSI	RCATGY	4 cut(s)	181, 334, 1151, 1692
BstSCI	CCNGG	5 cut(s)	82, 314, 872, 1105, 1330
BstSFI	CTRYAG	3 cut(s)	535, 651, 1572
BstSLI	GKGCMC	2 cut(s)	110, 194
BstV1I	GCAGC	4 cut(s)	818, 905, 1106, 1636
BstV2I	GAAGAC	2 cut(s)	723, 799
BstX2I	RGATCY	1 cut(s)	574
BstXI	CCANNNNNNTGG	1 cut(s)	1002
BstYI	RGATCY	1 cut(s)	574
BsuRI	GGCC	4 cut(s)	108, 784, 872, 1601
BtgI	CCRYGG	3 cut(s)	387, 406, 460
BtrI	CACGTC	1 cut(s)	1670
BtsCI	GGATG	9 cut(s)	424, 477, 873, 1249, 1363, 1450, 1554, 1599, 1657
BtsI	GCAGTG	4 cut(s)	283, 294, 1633, 1746
BtsIMutI	CAGTG	8 cut(s)	283, 294, 509, 827, 993, 1129, 1633, 1746
BveI	ACCTGC	3 cut(s)	658, 691, 1732
Cac8I	GCNNGC	5 cut(s)	28, 179, 401, 607, 786
CaiI	CAGNNNCTG	3 cut(s)	1106, 1172, 1261
CciI	TCATGA	2 cut(s)	205, 1024
Cfr13I	GGNCC	5 cut(s)	106, 107, 384, 499, 871
Csp6I	GTAC	2 cut(s)	1151, 1525
CviQI	GTAC	2 cut(s)	1151, 1525
DdeI	CTNAG	7 cut(s)	307, 581, 714, 1059, 1212, 1389, 1520
DpnI	GATC	7 cut(s)	282, 476, 576, 707, 1029, 1090, 1537
DpnII	GATC	7 cut(s)	280, 474, 574, 705, 1027, 1088, 1535
Eam1104I	CTCTTC	3 cut(s)	29, 201, 504
EarI	CTCTTC	3 cut(s)	29, 201, 504
Ecl136II	GAGCTC	1 cut(s)	154
Eco130I	CCWWGG	5 cut(s)	387, 406, 428, 460, 1528
Eco24I	GRGCYC	2 cut(s)	110, 156
Eco32I	GATATC	1 cut(s)	1163
Eco47I	GGWCC	2 cut(s)	384, 499
Eco53kI	GAGCTC	1 cut(s)	154
Eco57I	CTGAAG	1 cut(s)	536
Eco88I	CYCGRG	1 cut(s)	155
EcoICRI	GAGCTC	1 cut(s)	154
EcoO109I	RGGNCCY	1 cut(s)	106
EcoRI	GAATTC	1 cut(s)	1310
EcoRII	CCWGG	3 cut(s)	314, 1105, 1330
EcoRV	GATATC	1 cut(s)	1163
EcoT14I	CCWWGG	5 cut(s)	387, 406, 428, 460, 1528
EcoT38I	GRGCYC	2 cut(s)	110, 156
ErhI	CCWWGG	5 cut(s)	387, 406, 428, 460, 1528
FalI	AAGNNNNNCTT	4 cut(s)	593, 625, 1056, 1088
FaqI	GGGAC	3 cut(s)	336, 1486, 1649
Fnu4HI	GCNGC	5 cut(s)	807, 894, 1095, 1352, 1625
FokI	GGATG	9 cut(s)	411, 464, 880, 1256, 1370, 1457, 1561, 1606, 1664
FriOI	GRGCYC	2 cut(s)	110, 156
Fsp4HI	GCNGC	5 cut(s)	807, 894, 1095, 1352, 1625
FspBI	CTAG	2 cut(s)	797, 897
GluI	GCNGC	5 cut(s)	807, 894, 1095, 1352, 1625
GsuI	CTGGAG	3 cut(s)	1083, 1314, 1476
HaeIII	GGCC	4 cut(s)	108, 784, 872, 1601
HapII	CCGG	2 cut(s)	84, 874
HindIII	AAGCTT	2 cut(s)	24, 466
HinfI	GANTC	5 cut(s)	10, 695, 967, 1169, 1430
HpaII	CCGG	2 cut(s)	84, 874
HphI	GGTGA	4 cut(s)	1346, 1357, 1564, 1598
Hpy166II	GTNNAC	2 cut(s)	192, 991
Hpy188I	TCNGA	6 cut(s)	265, 584, 717, 1054, 1435, 1540
Hpy8I	GTNNAC	2 cut(s)	192, 991
HpyAV	CCTTC	3 cut(s)	39, 283, 841
HpyCH4III	ACNGT	9 cut(s)	361, 558, 598, 757, 1021, 1155, 1366, 1398, 1742
HpyCH4IV	ACGT	4 cut(s)	252, 1116, 1669, 1695
HpyF10VI	GCNNNNNNNGC	5 cut(s)	285, 465, 650, 683, 883
HpyF3I	CTNAG	7 cut(s)	307, 581, 714, 1059, 1212, 1389, 1520
HpySE526I	ACGT	4 cut(s)	252, 1116, 1669, 1695
KpnI	GGTACC	1 cut(s)	1528
Kzo9I	GATC	7 cut(s)	280, 474, 574, 705, 1027, 1088, 1535
LguI	GCTCTTC	1 cut(s)	504
LmnI	GCTCC	3 cut(s)	408, 1102, 1457
Lsp1109I	GCAGC	4 cut(s)	818, 905, 1106, 1636
LweI	GCATC	4 cut(s)	433, 1338, 1348, 1642
MaeI	CTAG	2 cut(s)	797, 897
MaeII	ACGT	4 cut(s)	252, 1116, 1669, 1695
MaeIII	GTNAC	7 cut(s)	161, 446, 491, 530, 562, 1257, 1691
MalI	GATC	7 cut(s)	282, 476, 576, 707, 1029, 1090, 1537
MboI	GATC	7 cut(s)	280, 474, 574, 705, 1027, 1088, 1535
MflI	RGATCY	1 cut(s)	574
MhlI	GDGCHC	3 cut(s)	110, 156, 194
MluCI	AATT	6 cut(s)	93, 452, 522, 1110, 1305, 1310
MmeI	TCCRAC	3 cut(s)	906, 1348, 1462
MseI	TTAA	3 cut(s)	347, 600, 1032
MslI	CAYNNNNRTG	2 cut(s)	1547, 1638
MspA1I	CMGCKG	1 cut(s)	1354
MspI	CCGG	2 cut(s)	84, 874
MspR9I	CCNGG	5 cut(s)	84, 316, 874, 1107, 1332
Mva1269I	GAATGC	3 cut(s)	679, 829, 1650
MvaI	CCWGG	3 cut(s)	316, 1107, 1332
MwoI	GCNNNNNNNGC	5 cut(s)	285, 465, 650, 683, 883
NciI	CCSGG	2 cut(s)	84, 874
NcoI	CCATGG	3 cut(s)	387, 406, 460
NdeII	GATC	7 cut(s)	280, 474, 574, 705, 1027, 1088, 1535
NlaIV	GGNNCC	3 cut(s)	81, 108, 1526
NmuCI	GTSAC	1 cut(s)	491
NspI	RCATGY	4 cut(s)	181, 334, 1151, 1692
OliI	CACNNNNGTG	1 cut(s)	1638
PaeI	GCATGC	1 cut(s)	181
PaeR7I	CTCGAG	1 cut(s)	155
PagI	TCATGA	2 cut(s)	205, 1024
PciI	ACATGT	2 cut(s)	330, 1688
PciSI	GCTCTTC	1 cut(s)	504
PctI	GAATGC	3 cut(s)	679, 829, 1650
PfeI	GAWTC	5 cut(s)	10, 695, 967, 1169, 1430
PflMI	CCANNNNNTGG	2 cut(s)	1106, 1172
PfoI	TCCNGGA	1 cut(s)	1105
PkrI	GCNGC	5 cut(s)	808, 895, 1096, 1353, 1626
PscI	ACATGT	2 cut(s)	330, 1688
Psp124BI	GAGCTC	1 cut(s)	156
Psp6I	CCWGG	3 cut(s)	314, 1105, 1330
PspGI	CCWGG	3 cut(s)	314, 1105, 1330
PspN4I	GGNNCC	3 cut(s)	81, 108, 1526
PspOMI	GGGCCC	1 cut(s)	106
PspPI	GGNCC	5 cut(s)	106, 107, 384, 499, 871
PstI	CTGCAG	1 cut(s)	655
PstNI	CAGNNNCTG	3 cut(s)	1106, 1172, 1261
PsuI	RGATCY	1 cut(s)	574
RsaI	GTAC	2 cut(s)	1152, 1526
RsaNI	GTAC	2 cut(s)	1151, 1525
RseI	CAYNNNNRTG	2 cut(s)	1547, 1638
SacI	GAGCTC	1 cut(s)	156
SapI	GCTCTTC	1 cut(s)	504
SaqAI	TTAA	3 cut(s)	347, 600, 1032
SatI	GCNGC	5 cut(s)	807, 894, 1095, 1352, 1625
Sau3AI	GATC	7 cut(s)	280, 474, 574, 705, 1027, 1088, 1535
Sau96I	GGNCC	5 cut(s)	106, 107, 384, 499, 871
ScrFI	CCNGG	5 cut(s)	84, 316, 874, 1107, 1332
SduI	GDGCHC	3 cut(s)	110, 156, 194
SfaNI	GCATC	4 cut(s)	433, 1338, 1348, 1642
SfcI	CTRYAG	3 cut(s)	535, 651, 1572
Sfr274I	CTCGAG	1 cut(s)	155
SinI	GGWCC	2 cut(s)	384, 499
SlaI	CTCGAG	1 cut(s)	155
SmiMI	CAYNNNNRTG	2 cut(s)	1547, 1638
SmlI	CTYRAG	2 cut(s)	155, 853
SmoI	CTYRAG	2 cut(s)	155, 853
SphI	GCATGC	1 cut(s)	181
Sse9I	AATT	6 cut(s)	93, 452, 522, 1110, 1305, 1310
SsiI	CCGC	1 cut(s)	1352
SspMI	CTAG	2 cut(s)	797, 897
SstI	GAGCTC	1 cut(s)	156
StyD4I	CCNGG	5 cut(s)	82, 314, 872, 1105, 1330
StyI	CCWWGG	5 cut(s)	387, 406, 428, 460, 1528
TaaI	ACNGT	9 cut(s)	361, 558, 598, 757, 1021, 1155, 1366, 1398, 1742
TaiI	ACGT	4 cut(s)	255, 1119, 1672, 1698
TaqI	TCGA	3 cut(s)	156, 363, 1087
TasI	AATT	6 cut(s)	93, 452, 522, 1110, 1305, 1310
TatI	WGTACW	1 cut(s)	1150
TauI	GCSGC	1 cut(s)	1354
TfiI	GAWTC	5 cut(s)	10, 695, 967, 1169, 1430
Tru1I	TTAA	3 cut(s)	347, 600, 1032
Tru9I	TTAA	3 cut(s)	347, 600, 1032
TscAI	CASTG	8 cut(s)	290, 301, 509, 834, 993, 1129, 1640, 1753
TseFI	GTSAC	1 cut(s)	491
TseI	GCWGC	4 cut(s)	806, 893, 1094, 1624
Tsp45I	GTSAC	1 cut(s)	491
TspDTI	ATGAA	6 cut(s)	56, 60, 194, 1013, 1666, 1674
TspRI	CASTG	8 cut(s)	290, 301, 509, 834, 993, 1129, 1640, 1753
Van91I	CCANNNNNTGG	2 cut(s)	1106, 1172
VneI	GTGCAC	1 cut(s)	190
VpaK11BI	GGWCC	2 cut(s)	384, 499
XapI	RAATTY	2 cut(s)	452, 1310
XceI	RCATGY	4 cut(s)	181, 334, 1151, 1692
XcmI	CCANNNNNNNNNTGG	3 cut(s)	467, 1006, 1753
XhoI	CTCGAG	1 cut(s)	155
XspI	CTAG	2 cut(s)	797, 897

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.