Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0002257

Physical Location & Seq

Genomic Coordinates Reverse (-)

24049873 .. 24056534

Gene Structure 6662 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0253300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGGCGATTGCAGCGGCAGCTGTCATCGTTCCACTCGGCCTCCTCTTCTTCCTCTCTGGCCTCTTTGTCAATCTCCTTCAGGCGATTTGCTTCATTCTTATTCGGCCCGTGTCGAAGAATATATACAGAAGAATCAACAGAGTGCTGGCAGAGCTGCTGTGGCTGGAGCTCGTTTGGATCATAGATTGGTGGGCAGGCGTCAAGATCAAAGTGTACACAGACCCTGAAACCTTCCGTTTAATGGGTAAAGAACATGCACTTGTCATATGCAATCACAAAAGTGATATTGATTGGCTTGTTGGATGGGTTCTAGCTCAGCGGTCAGGTTGCCTTGGCAGCTCATTAGCTGTAATGAAGAAATCATCCAAATTTCTTCCGGTAATAGGGTGGTCAATGTGGTTTTCTGAATATCTCTTTTTGGAAAGAAGCTGGGCAAAAGATGAAGGCACAATAAAGTCAGGTATTCAACGGCTGAAGGACTACCCTCAGCCCTTTTGGTTAGCTCTTTTTGTAGAAGGAACTCGTTTTACACAGGCAAAACTTTTGGCAGCACAGGAATATGCCGCCTCAACAGGGCTACCTGTCCCTAGAAATGTTTTGATTCCTCGCACTAAGGGTTTTGTCTCAGCAGTAAGTCACATGCGCTCATTTGTTCCAGCTATATATGATATAACAGTGGCTATTCCTAAAAGTTCACCTGCACCTACAATGCTAAGACTGTTTGAGGGGCGACCGTCTGTGGTGCACGTACACATCAAGAGGCATGTGATGAAGGACTTGCCTGAAACTGATGATGCTGTTGCACAATGGTGTAAGGAAGCATTTGTGGCCAAGGATGCATTATTGGACAAACATGCAGTAGAGCAAACTTTTGGCGATCAAGAATTGCAAATTACTAGGCGGCCACTGAAGTCACTTTTGGTTGTTACATCTTGGGCATGTTTACTGGTTTTGGGGTCCCTAAAGTTCCTCTACTGGTCTTCACTTCTATCCTCGTGGAAGGGCATTGCATTCTCAGCATTGGGTTTGGGCATTGTTACCGTCCTCATGCAGATCTTGATTCGGTTTTCTCAGTCAGAGCATTCAACCCCTGCCAAAGTGGCTCCTGCAAAGCATAATAATGGAGAGGCTTCTGGTGAACCAACCAAACAGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

385

Amino Acids

43.16

Weight (kDa)

9.53

Isoelectric Point (pI)

42.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acyltransferase	PF01553	80 - 228	9.8e-15	Acyltransferase
Acyltransf_C	PF16076	239 - 312	2.2e-23	Acyltransferase C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002257)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66170
fragaria_vesca	FvH4_1g29990 FvH4_1g29990 FvH4_1g29990 FvH4_6g02390
malus_domestica	MD09G1267100.v1.1 MD17G1254900.v1.1 MD17G1255100.v1.1 MD17G1260200.v1.1
prunus_persica	Prupe.3G164800_v2.0.a1
pyrus_communis	pycom12401g00150 pycom461g00270
rosa_chinensis	RchiOBHm_Chr3g0450161 RchiOBHm_Chr3g0492331
rosa_laevigata	RLG00000022781 RLG00000022872 RLG00000022874 RLG00000022875 RLG00000025750
rosa_multiflora	Rmu_co8200976.1_g000001 Rmu_sc0003156.1_g000026 Rmu_sc0010184.1_g000005 Rmu_sc0010184.1_g000015 Rmu_sc0020297.1_g000001
rosa_roxburghii	Rroxscaffold_3G00226630 Rroxscaffold_6G00392410 Rroxscaffold_6G00427920
rosa_rugosa	Rorug02G0625900 Rorug03G0253300
rosa_samantha	Rh2AG397300 Rh2CG383900 Rh3AG025300 Rh3AG303200 Rh3BG025900 Rh3BG339200 Rh3BG339300 Rh3CG024800 Rh3CG336400 Rh3DG025900 Rh3DG327500 Rh3DG338500
rosa_wichuraiana	Rw3G002030 Rw3G026750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	706
Acc36I	ACCTGC	1 cut(s)	706
AciI	CCGC	4 cut(s)	14, 319, 564, 901
AclWI	GGATC	1 cut(s)	185
AcoI	YGGCCR	2 cut(s)	828, 902
AcsI	RAATTY	1 cut(s)	368
AcuI	CTGAAG	3 cut(s)	62, 494, 929
AcyI	GRCGYC	1 cut(s)	198
AfaI	GTAC	2 cut(s)	215, 750
AfiI	CCNNNNNNNGG	3 cut(s)	241, 383, 573
AgsI	TTSAA	2 cut(s)	467, 1086
AjuI	GAANNNNNNNTTGG	2 cut(s)	902, 934
AleI	CACNNNNGTG	2 cut(s)	279, 808
AluBI	AGCT	9 cut(s)	20, 154, 169, 314, 339, 347, 429, 503, 659
AluI	AGCT	9 cut(s)	20, 154, 169, 314, 339, 347, 429, 503, 659
Alw21I	GWGCWC	2 cut(s)	171, 747
Alw26I	GTCTC	1 cut(s)	628
Alw44I	GTGCAC	1 cut(s)	743
AlwI	GGATC	1 cut(s)	185
AlwNI	CAGNNNCTG	1 cut(s)	224
AoxI	GGCC	5 cut(s)	37, 58, 104, 828, 902
ApaLI	GTGCAC	1 cut(s)	743
ApeKI	GCWGC	5 cut(s)	11, 17, 154, 336, 548
ApoI	RAATTY	1 cut(s)	368
AspLEI	GCGC	1 cut(s)	645
AspS9I	GGNCC	2 cut(s)	105, 957
AsuHPI	GGTGA	2 cut(s)	687, 1148
AvaII	GGWCC	1 cut(s)	957
BaeGI	GKGCMC	1 cut(s)	747
BalI	TGGCCA	1 cut(s)	830
BanII	GRGCYC	1 cut(s)	171
BarI	GAAGNNNNNNTAC	2 cut(s)	107, 139
BauI	CACGAG	1 cut(s)	994
BbsI	GAAGAC	1 cut(s)	972
Bbv12I	GWGCWC	2 cut(s)	171, 747
BbvCI	CCTCAGC	1 cut(s)	486
BbvI	GCAGC	5 cut(s)	23, 29, 141, 348, 560
BccI	CCATC	1 cut(s)	297
BceAI	ACGGC	1 cut(s)	485
BcoDI	GTCTC	1 cut(s)	628
BfaI	CTAG	3 cut(s)	311, 588, 897
BfuAI	ACCTGC	1 cut(s)	706
BglI	GCCNNNNNGGC	1 cut(s)	1100
BglII	AGATCT	1 cut(s)	1053
BisI	GCNGC	8 cut(s)	12, 15, 18, 155, 337, 549, 564, 902
BlpI	GCTNAGC	1 cut(s)	315
BlsI	GCNGC	8 cut(s)	13, 16, 19, 156, 338, 550, 565, 903
Bme18I	GGWCC	1 cut(s)	957
BmgT120I	GGNCC	2 cut(s)	105, 957
BmiI	GGNNCC	3 cut(s)	958, 959, 1104
BmsI	GCATC	2 cut(s)	784, 826
BpiI	GAAGAC	1 cut(s)	972
BpmI	CTGGAG	1 cut(s)	185
Bpu10I	CCTNAGC	1 cut(s)	486
Bpu1102I	GCTNAGC	1 cut(s)	315
BsaAI	YACGTR	1 cut(s)	748
BsaHI	GRCGYC	1 cut(s)	198
BsaJI	CCNNGG	2 cut(s)	331, 831
BsaWI	WCCGGW	1 cut(s)	376
BsaXI	ACNNNNNCTCC	2 cut(s)	24, 54
Bsc4I	CCNNNNNNNGG	3 cut(s)	241, 383, 573
Bse1I	ACTGG	2 cut(s)	951, 980
Bse3DI	GCAATG	1 cut(s)	1005
BseDI	CCNNGG	2 cut(s)	331, 831
BseGI	GGATG	3 cut(s)	308, 362, 841
BseLI	CCNNNNNNNGG	3 cut(s)	241, 383, 573
BseMI	GCAATG	1 cut(s)	1005
BseMII	CTCAG	5 cut(s)	329, 500, 639, 1029, 1085
BseNI	ACTGG	2 cut(s)	951, 980
BseRI	GAGGAG	1 cut(s)	32
BseSI	GKGCMC	1 cut(s)	747
BseXI	GCAGC	5 cut(s)	23, 29, 141, 348, 560
BseYI	CCCAGC	1 cut(s)	429
BsgI	GTGCAG	1 cut(s)	684
Bsh1285I	CGRYCG	1 cut(s)	734
BshFI	GGCC	5 cut(s)	39, 60, 106, 830, 904
BsiEI	CGRYCG	1 cut(s)	734
BsiHKAI	GWGCWC	2 cut(s)	171, 747
BsiSI	CCGG	1 cut(s)	377
BslFI	GGGAC	2 cut(s)	569, 943
BslI	CCNNNNNNNGG	3 cut(s)	241, 383, 573
BsmAI	GTCTC	1 cut(s)	628
BsmFI	GGGAC	2 cut(s)	569, 943
BsmI	GAATGC	2 cut(s)	1010, 1081
BsnI	GGCC	5 cut(s)	39, 60, 106, 830, 904
Bsp1286I	GDGCHC	2 cut(s)	171, 747
Bsp1407I	TGTACA	1 cut(s)	213
Bsp143I	GATC	4 cut(s)	177, 204, 877, 1053
Bsp1720I	GCTNAGC	1 cut(s)	315
BspACI	CCGC	4 cut(s)	14, 319, 564, 901
BspANI	GGCC	5 cut(s)	39, 60, 106, 830, 904
BspCNI	CTCAG	5 cut(s)	328, 499, 638, 1028, 1084
BspLI	GGNNCC	3 cut(s)	958, 959, 1104
BspMI	ACCTGC	1 cut(s)	706
BspPI	GGATC	1 cut(s)	185
BsrDI	GCAATG	1 cut(s)	1005
BsrGI	TGTACA	1 cut(s)	213
BsrI	ACTGG	2 cut(s)	951, 980
BssECI	CCNNGG	2 cut(s)	331, 831
BssMI	GATC	4 cut(s)	177, 204, 877, 1053
BssNI	GRCGYC	1 cut(s)	198
BssSI	CACGAG	1 cut(s)	994
BssT1I	CCWWGG	2 cut(s)	331, 831
Bst2BI	CACGAG	1 cut(s)	994
Bst4CI	ACNGT	4 cut(s)	676, 720, 735, 1042
Bst6I	CTCTTC	1 cut(s)	50
BstACI	GRCGYC	1 cut(s)	198
BstAUI	TGTACA	1 cut(s)	213
BstBAI	YACGTR	1 cut(s)	748
BstC8I	GCNNGC	2 cut(s)	147, 196
BstDEI	CTNAG	7 cut(s)	315, 486, 612, 625, 713, 1015, 1071
BstF5I	GGATG	3 cut(s)	308, 362, 841
BstHHI	GCGC	1 cut(s)	645
BstKTI	GATC	4 cut(s)	180, 207, 880, 1056
BstMAI	GTCTC	1 cut(s)	628
BstMBI	GATC	4 cut(s)	177, 204, 877, 1053
BstMCI	CGRYCG	1 cut(s)	734
BstMWI	GCNNNNNNNGC	9 cut(s)	11, 17, 151, 160, 336, 827, 836, 1016, 1100
BstNSI	RCATGY	5 cut(s)	257, 643, 767, 857, 942
BstSLI	GKGCMC	1 cut(s)	747
BstV1I	GCAGC	5 cut(s)	23, 29, 141, 348, 560
BstV2I	GAAGAC	1 cut(s)	972
BstX2I	RGATCY	1 cut(s)	1053
BstYI	RGATCY	1 cut(s)	1053
BsuRI	GGCC	5 cut(s)	39, 60, 106, 830, 904
BtsCI	GGATG	3 cut(s)	308, 362, 841
BtsIMutI	CAGTG	2 cut(s)	681, 905
BveI	ACCTGC	1 cut(s)	706
Cac8I	GCNNGC	2 cut(s)	147, 196
CaiI	CAGNNNCTG	1 cut(s)	224
CfoI	GCGC	1 cut(s)	645
Cfr13I	GGNCC	2 cut(s)	105, 957
CseI	GACGC	1 cut(s)	187
Csp6I	GTAC	2 cut(s)	214, 749
CviAII	CATG	6 cut(s)	254, 640, 764, 854, 939, 1048
CviQI	GTAC	2 cut(s)	214, 749
DdeI	CTNAG	7 cut(s)	315, 486, 612, 625, 713, 1015, 1071
DpnI	GATC	4 cut(s)	179, 206, 879, 1055
DpnII	GATC	4 cut(s)	177, 204, 877, 1053
EaeI	YGGCCR	2 cut(s)	828, 902
Eam1104I	CTCTTC	1 cut(s)	50
EarI	CTCTTC	1 cut(s)	50
Ecl136II	GAGCTC	1 cut(s)	169
Eco130I	CCWWGG	2 cut(s)	331, 831
Eco24I	GRGCYC	1 cut(s)	171
Eco47I	GGWCC	1 cut(s)	957
Eco53kI	GAGCTC	1 cut(s)	169
Eco57I	CTGAAG	3 cut(s)	62, 494, 929
EcoICRI	GAGCTC	1 cut(s)	169
EcoO109I	RGGNCCY	1 cut(s)	957
EcoT14I	CCWWGG	2 cut(s)	331, 831
EcoT22I	ATGCAT	1 cut(s)	841
EcoT38I	GRGCYC	1 cut(s)	171
ErhI	CCWWGG	2 cut(s)	331, 831
FaeI	CATG	6 cut(s)	257, 643, 767, 857, 942, 1051
FaqI	GGGAC	2 cut(s)	569, 943
FatI	CATG	6 cut(s)	253, 639, 763, 853, 938, 1047
FauNDI	CATATG	1 cut(s)	266
Fnu4HI	GCNGC	8 cut(s)	12, 15, 18, 155, 337, 549, 564, 902
FokI	GGATG	3 cut(s)	315, 349, 848
FriOI	GRGCYC	1 cut(s)	171
Fsp4HI	GCNGC	8 cut(s)	12, 15, 18, 155, 337, 549, 564, 902
FspBI	CTAG	3 cut(s)	311, 588, 897
GlaI	GCGC	1 cut(s)	644
GluI	GCNGC	8 cut(s)	12, 15, 18, 155, 337, 549, 564, 902
GsaI	CCCAGC	1 cut(s)	433
GsuI	CTGGAG	1 cut(s)	185
HaeIII	GGCC	5 cut(s)	39, 60, 106, 830, 904
HapII	CCGG	1 cut(s)	377
HgaI	GACGC	1 cut(s)	187
HhaI	GCGC	1 cut(s)	645
Hin1I	GRCGYC	1 cut(s)	198
Hin1II	CATG	6 cut(s)	257, 643, 767, 857, 942, 1051
Hin6I	GCGC	1 cut(s)	643
HinP1I	GCGC	1 cut(s)	643
HinfI	GANTC	3 cut(s)	132, 601, 1060
HpaII	CCGG	1 cut(s)	377
HphI	GGTGA	2 cut(s)	687, 1148
Hpy166II	GTNNAC	7 cut(s)	214, 216, 695, 745, 751, 944, 1139
Hpy188I	TCNGA	2 cut(s)	406, 1078
Hpy188III	TCNNGA	4 cut(s)	202, 757, 881, 1057
Hpy8I	GTNNAC	7 cut(s)	214, 216, 695, 745, 751, 944, 1139
HpyAV	CCTTC	7 cut(s)	86, 241, 437, 469, 509, 766, 994
HpyCH4III	ACNGT	4 cut(s)	676, 720, 735, 1042
HpyCH4IV	ACGT	1 cut(s)	747
HpyF10VI	GCNNNNNNNGC	9 cut(s)	11, 17, 151, 160, 336, 827, 836, 1016, 1100
HpyF3I	CTNAG	7 cut(s)	315, 486, 612, 625, 713, 1015, 1071
HpySE526I	ACGT	1 cut(s)	747
Hsp92I	GRCGYC	1 cut(s)	198
Hsp92II	CATG	6 cut(s)	257, 643, 767, 857, 942, 1051
HspAI	GCGC	1 cut(s)	643
KflI	GGGWCCC	1 cut(s)	957
Kzo9I	GATC	4 cut(s)	177, 204, 877, 1053
LmnI	GCTCC	2 cut(s)	166, 1108
Lsp1109I	GCAGC	5 cut(s)	23, 29, 141, 348, 560
LweI	GCATC	2 cut(s)	784, 826
MaeI	CTAG	3 cut(s)	311, 588, 897
MaeII	ACGT	1 cut(s)	747
MaeIII	GTNAC	4 cut(s)	635, 912, 925, 1036
MalI	GATC	4 cut(s)	179, 206, 879, 1055
MboI	GATC	4 cut(s)	177, 204, 877, 1053
MboII	GAAGA	7 cut(s)	37, 40, 127, 141, 365, 367, 972
MflI	RGATCY	1 cut(s)	1053
MhlI	GDGCHC	2 cut(s)	171, 747
MlsI	TGGCCA	1 cut(s)	830
MluCI	AATT	3 cut(s)	368, 884, 891
MluNI	TGGCCA	1 cut(s)	830
MmeI	TCCRAC	1 cut(s)	280
Mox20I	TGGCCA	1 cut(s)	830
Mph1103I	ATGCAT	1 cut(s)	841
MscI	TGGCCA	1 cut(s)	830
MseI	TTAA	1 cut(s)	239
MslI	CAYNNNNRTG	3 cut(s)	279, 808, 1119
Msp20I	TGGCCA	1 cut(s)	830
MspA1I	CMGCKG	3 cut(s)	14, 20, 319
MspI	CCGG	1 cut(s)	377
Mva1269I	GAATGC	2 cut(s)	1010, 1081
MwoI	GCNNNNNNNGC	9 cut(s)	11, 17, 151, 160, 336, 827, 836, 1016, 1100
NdeI	CATATG	1 cut(s)	266
NdeII	GATC	4 cut(s)	177, 204, 877, 1053
NlaIII	CATG	6 cut(s)	257, 643, 767, 857, 942, 1051
NlaIV	GGNNCC	3 cut(s)	958, 959, 1104
NmeAIII	GCCGAG	1 cut(s)	15
NmuCI	GTSAC	2 cut(s)	635, 912
NsiI	ATGCAT	1 cut(s)	841
NspI	RCATGY	5 cut(s)	257, 643, 767, 857, 942
OliI	CACNNNNGTG	2 cut(s)	279, 808
PaqCI	CACCTGC	1 cut(s)	706
PctI	GAATGC	2 cut(s)	1010, 1081
PfeI	GAWTC	3 cut(s)	132, 601, 1060
PkrI	GCNGC	8 cut(s)	13, 16, 19, 156, 338, 550, 565, 903
Ppu21I	YACGTR	1 cut(s)	748
PpuMI	RGGWCCY	1 cut(s)	957
Psp124BI	GAGCTC	1 cut(s)	171
Psp5II	RGGWCCY	1 cut(s)	957
PspFI	CCCAGC	1 cut(s)	429
PspN4I	GGNNCC	3 cut(s)	958, 959, 1104
PspPI	GGNCC	2 cut(s)	105, 957
PspPPI	RGGWCCY	1 cut(s)	957
PsrI	GAACNNNNNNTAC	2 cut(s)	511, 543
PstNI	CAGNNNCTG	1 cut(s)	224
PsuI	RGATCY	1 cut(s)	1053
PvuII	CAGCTG	1 cut(s)	20
RsaI	GTAC	2 cut(s)	215, 750
RsaNI	GTAC	2 cut(s)	214, 749
RseI	CAYNNNNRTG	3 cut(s)	279, 808, 1119
SacI	GAGCTC	1 cut(s)	171
SaqAI	TTAA	1 cut(s)	239
SatI	GCNGC	8 cut(s)	12, 15, 18, 155, 337, 549, 564, 902
Sau3AI	GATC	4 cut(s)	177, 204, 877, 1053
Sau96I	GGNCC	2 cut(s)	105, 957
SduI	GDGCHC	2 cut(s)	171, 747
SfaNI	GCATC	2 cut(s)	784, 826
SinI	GGWCC	1 cut(s)	957
SmiMI	CAYNNNNRTG	3 cut(s)	279, 808, 1119
Sse9I	AATT	3 cut(s)	368, 884, 891
SsiI	CCGC	4 cut(s)	14, 319, 564, 901
SspMI	CTAG	3 cut(s)	311, 588, 897
SstI	GAGCTC	1 cut(s)	171
StyI	CCWWGG	2 cut(s)	331, 831
TaaI	ACNGT	4 cut(s)	676, 720, 735, 1042
TaiI	ACGT	1 cut(s)	750
TaqI	TCGA	1 cut(s)	113
TasI	AATT	3 cut(s)	368, 884, 891
TatI	WGTACW	1 cut(s)	213
TauI	GCSGC	3 cut(s)	17, 566, 904
TfiI	GAWTC	3 cut(s)	132, 601, 1060
Tru1I	TTAA	1 cut(s)	239
Tru9I	TTAA	1 cut(s)	239
TscAI	CASTG	2 cut(s)	681, 912
TseFI	GTSAC	2 cut(s)	635, 912
TseI	GCWGC	5 cut(s)	11, 17, 154, 336, 548
Tsp45I	GTSAC	2 cut(s)	635, 912
TspDTI	ATGAA	4 cut(s)	82, 368, 456, 785
TspGWI	ACGGA	1 cut(s)	224
TspRI	CASTG	2 cut(s)	681, 912
VneI	GTGCAC	1 cut(s)	743
VpaK11BI	GGWCC	1 cut(s)	957
XapI	RAATTY	1 cut(s)	368
XceI	RCATGY	5 cut(s)	257, 643, 767, 857, 942
XspI	CTAG	3 cut(s)	311, 588, 897
Zsp2I	ATGCAT	1 cut(s)	841

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.