Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002257

Physical Location & Seq

Genomic Coordinates Forward (+)

10269260 .. 10270976

Gene Structure 1717 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00226630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 204 bp

ATGGTGGTAATGCCGCTGGATGCAACTCTTGGACAGCTAAAACAAGAAGCCAAGAGTGTCCTGAGGGATACATATTGTATGACAGAACAGTTTGTGGTGATGGAAATCAAAGGCTTGGAGGAATCACATGATATGCAAGTACTTTCTGGAGCAGTTCAATTGGGGACAGTTTGTGTCTCTTCACACAAATGCTATTCTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000212 GO:0000226 GO:0000228 GO:0000280 GO:0000785 GO:0000790 GO:0000791 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005719 GO:0006323 GO:0006355 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007059 GO:0007060 GO:0007140 GO:0007275 GO:0007276 GO:0008134 GO:0008150 GO:0009555 GO:0009889 GO:0009987 GO:0010032 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0030154 GO:0030261 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0033613 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044703 GO:0045132 GO:0048229 GO:0048232 GO:0048235 GO:0048285 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0051321 GO:0051704 GO:0055046 GO:0060255 GO:0065007 GO:0070013 GO:0070192 GO:0071103 GO:0071840 GO:0080090 GO:0097159 GO:0098813 GO:0140013 GO:1901363 GO:1903046 GO:1903506 GO:1990188 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD

Protein Analysis

67

Amino Acids

7.41

Weight (kDa)

4.89

Isoelectric Point (pI)

39.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ubiquitin_At1g33420	PF25565	1 - 56	1e-16	At1g33420-like, ubiquitin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002257)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66170
fragaria_vesca	FvH4_1g29990 FvH4_1g29990 FvH4_1g29990 FvH4_6g02390
malus_domestica	MD09G1267100.v1.1 MD17G1254900.v1.1 MD17G1255100.v1.1 MD17G1260200.v1.1
prunus_persica	Prupe.3G164800_v2.0.a1
pyrus_communis	pycom12401g00150 pycom461g00270
rosa_chinensis	RchiOBHm_Chr3g0450161 RchiOBHm_Chr3g0492331
rosa_laevigata	RLG00000022781 RLG00000022872 RLG00000022874 RLG00000022875 RLG00000025750
rosa_multiflora	Rmu_co8200976.1_g000001 Rmu_sc0003156.1_g000026 Rmu_sc0010184.1_g000005 Rmu_sc0010184.1_g000015 Rmu_sc0020297.1_g000001
rosa_roxburghii	Rroxscaffold_3G00226630 Rroxscaffold_6G00392410 Rroxscaffold_6G00427920
rosa_rugosa	Rorug02G0625900 Rorug03G0253300
rosa_samantha	Rh2AG397300 Rh2CG383900 Rh3AG025300 Rh3AG303200 Rh3BG025900 Rh3BG339200 Rh3BG339300 Rh3CG024800 Rh3CG336400 Rh3DG025900 Rh3DG327500 Rh3DG338500
rosa_wichuraiana	Rw3G002030 Rw3G026750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	14
AfaI	GTAC	1 cut(s)	141
AgsI	TTSAA	1 cut(s)	158
AluBI	AGCT	1 cut(s)	37
AluI	AGCT	1 cut(s)	37
Alw26I	GTCTC	1 cut(s)	181
AsuHPI	GGTGA	1 cut(s)	109
AxyI	CCTNAGG	1 cut(s)	62
BccI	CCATC	1 cut(s)	94
BciVI	GTATCC	1 cut(s)	61
BcoDI	GTCTC	1 cut(s)	181
BfuI	GTATCC	1 cut(s)	61
BisI	GCNGC	1 cut(s)	14
BlsI	GCNGC	1 cut(s)	15
BmcAI	AGTACT	1 cut(s)	141
BmsI	GCATC	1 cut(s)	10
BpmI	CTGGAG	1 cut(s)	168
BsaBI	GATNNNNATC	1 cut(s)	104
Bse21I	CCTNAGG	1 cut(s)	62
Bse8I	GATNNNNATC	1 cut(s)	104
BseGI	GGATG	1 cut(s)	25
BseJI	GATNNNNATC	1 cut(s)	104
BseMII	CTCAG	1 cut(s)	53
BslFI	GGGAC	1 cut(s)	178
BsmAI	GTCTC	1 cut(s)	181
BsmFI	GGGAC	1 cut(s)	178
BspACI	CCGC	1 cut(s)	14
BspCNI	CTCAG	1 cut(s)	54
Bst4CI	ACNGT	2 cut(s)	90, 169
Bst6I	CTCTTC	1 cut(s)	184
BstDEI	CTNAG	1 cut(s)	62
BstF5I	GGATG	1 cut(s)	25
BstMAI	GTCTC	1 cut(s)	181
Bsu36I	CCTNAGG	1 cut(s)	62
BsuI	GTATCC	1 cut(s)	61
BtsCI	GGATG	1 cut(s)	25
Csp6I	GTAC	1 cut(s)	140
CviAII	CATG	1 cut(s)	128
CviJI	RGCY	3 cut(s)	37, 50, 114
CviKI_1	RGCY	3 cut(s)	37, 50, 114
CviQI	GTAC	1 cut(s)	140
DdeI	CTNAG	1 cut(s)	62
Eam1104I	CTCTTC	1 cut(s)	184
EarI	CTCTTC	1 cut(s)	184
Eco81I	CCTNAGG	1 cut(s)	62
FaeI	CATG	1 cut(s)	131
FaiI	YATR	4 cut(s)	73, 80, 129, 134
FaqI	GGGAC	1 cut(s)	178
FatI	CATG	1 cut(s)	127
Fnu4HI	GCNGC	1 cut(s)	14
FokI	GGATG	1 cut(s)	32
Fsp4HI	GCNGC	1 cut(s)	14
GluI	GCNGC	1 cut(s)	14
GsuI	CTGGAG	1 cut(s)	168
Hin1II	CATG	1 cut(s)	131
HinfI	GANTC	1 cut(s)	122
HphI	GGTGA	1 cut(s)	109
Hpy188I	TCNGA	1 cut(s)	199
Hpy188III	TCNNGA	2 cut(s)	61, 147
HpyCH4III	ACNGT	2 cut(s)	90, 169
HpyCH4V	TGCA	2 cut(s)	23, 136
HpyF3I	CTNAG	1 cut(s)	62
Hsp92II	CATG	1 cut(s)	131
LmnI	GCTCC	1 cut(s)	149
LpnPI	CCDG	3 cut(s)	2, 74, 132
LweI	GCATC	1 cut(s)	10
MboII	GAAGA	1 cut(s)	171
MfeI	CAATTG	1 cut(s)	158
MluCI	AATT	1 cut(s)	158
MnlI	CCTC	2 cut(s)	57, 112
MseI	TTAA	1 cut(s)	202
MslI	CAYNNNNRTG	1 cut(s)	187
MspA1I	CMGCKG	1 cut(s)	16
MunI	CAATTG	1 cut(s)	158
NlaIII	CATG	1 cut(s)	131
PfeI	GAWTC	1 cut(s)	122
PkrI	GCNGC	1 cut(s)	15
RsaI	GTAC	1 cut(s)	141
RsaNI	GTAC	1 cut(s)	140
RseI	CAYNNNNRTG	1 cut(s)	187
SaqAI	TTAA	1 cut(s)	202
SatI	GCNGC	1 cut(s)	14
ScaI	AGTACT	1 cut(s)	141
SetI	ASST	1 cut(s)	39
SfaNI	GCATC	1 cut(s)	10
SgeI	CNNG	9 cut(s)	29, 41, 56, 64, 73, 127, 140, 149, 159
SmiMI	CAYNNNNRTG	1 cut(s)	187
Sse9I	AATT	1 cut(s)	158
SsiI	CCGC	1 cut(s)	14
TaaI	ACNGT	2 cut(s)	90, 169
TasI	AATT	1 cut(s)	158
TatI	WGTACW	1 cut(s)	139
TauI	GCSGC	1 cut(s)	16
TfiI	GAWTC	1 cut(s)	122
Tru1I	TTAA	1 cut(s)	202
Tru9I	TTAA	1 cut(s)	202
ZrmI	AGTACT	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.