Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00000461

Orthogroup ID

OG0002257

Physical Location & Seq

Genomic Coordinates Reverse (-)

222039 .. 222314

Gene Structure 276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom461g00270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGACTAGGCAGGAAGCTAGAGATGCAGCTCGCCTGCACATTGGCGATACGTGTTTGCTGGATTATGAAATCGAACAACGTAATTGTTGGAGGTTACATTGTCCGTCGTGGTGTGATGTGAACTCATTAACTAGGGTTTTAAAATACTCAATCAAGGAGCCTGGGAATGGTGTTCAGGTTGATGAGCCGGAACCTGAGATAGTTTACAATGAACCACTACCCATACCAGAAAGATTGCCTGGGGAATATAGATGCCTAAGTGATTCCTTAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000212 GO:0000226 GO:0000228 GO:0000280 GO:0000785 GO:0000790 GO:0000791 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005719 GO:0006323 GO:0006355 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007059 GO:0007060 GO:0007140 GO:0007275 GO:0007276 GO:0008134 GO:0008150 GO:0009555 GO:0009889 GO:0009987 GO:0010032 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0030154 GO:0030261 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0033613 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044703 GO:0045132 GO:0048229 GO:0048232 GO:0048235 GO:0048285 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0051321 GO:0051704 GO:0055046 GO:0060255 GO:0065007 GO:0070013 GO:0070192 GO:0071103 GO:0071840 GO:0080090 GO:0097159 GO:0098813 GO:0140013 GO:1901363 GO:1903046 GO:1903506 GO:1990188 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD

Protein Analysis

92

Amino Acids

10.51

Weight (kDa)

4.79

Isoelectric Point (pI)

50.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_plant_repro	PF25874	1 - 53	1.3e-08	Winged helix-turn-helix domain in plant reproductive proteins

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002257)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66170
fragaria_vesca	FvH4_1g29990 FvH4_1g29990 FvH4_1g29990 FvH4_6g02390
malus_domestica	MD09G1267100.v1.1 MD17G1254900.v1.1 MD17G1255100.v1.1 MD17G1260200.v1.1
prunus_persica	Prupe.3G164800_v2.0.a1
pyrus_communis	pycom12401g00150 pycom461g00270
rosa_chinensis	RchiOBHm_Chr3g0450161 RchiOBHm_Chr3g0492331
rosa_laevigata	RLG00000022781 RLG00000022872 RLG00000022874 RLG00000022875 RLG00000025750
rosa_multiflora	Rmu_co8200976.1_g000001 Rmu_sc0003156.1_g000026 Rmu_sc0010184.1_g000005 Rmu_sc0010184.1_g000015 Rmu_sc0020297.1_g000001
rosa_roxburghii	Rroxscaffold_3G00226630 Rroxscaffold_6G00392410 Rroxscaffold_6G00427920
rosa_rugosa	Rorug02G0625900 Rorug03G0253300
rosa_samantha	Rh2AG397300 Rh2CG383900 Rh3AG025300 Rh3AG303200 Rh3BG025900 Rh3BG339200 Rh3BG339300 Rh3CG024800 Rh3CG336400 Rh3DG025900 Rh3DG327500 Rh3DG338500
rosa_wichuraiana	Rw3G002030 Rw3G026750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	1 cut(s)	167
AflIII	ACRYGT	1 cut(s)	50
AjnI	CCWGG	2 cut(s)	160, 238
AluBI	AGCT	3 cut(s)	17, 29, 272
AluI	AGCT	3 cut(s)	17, 29, 272
ApeKI	GCWGC	1 cut(s)	26
BbvI	GCAGC	1 cut(s)	38
BciT130I	CCWGG	2 cut(s)	162, 240
BfaI	CTAG	3 cut(s)	6, 18, 132
BisI	GCNGC	1 cut(s)	27
BlsI	GCNGC	1 cut(s)	28
Bme1390I	CCNGG	2 cut(s)	162, 240
BmiI	GGNNCC	2 cut(s)	159, 192
BmrFI	CCNGG	2 cut(s)	162, 240
BmsI	GCATC	2 cut(s)	13, 242
Bpu10I	CCTNAGC	1 cut(s)	268
BsaAI	YACGTR	1 cut(s)	51
BsaJI	CCNNGG	2 cut(s)	161, 239
Bsc4I	CCNNNNNNNGG	1 cut(s)	167
BseBI	CCWGG	2 cut(s)	162, 240
BseDI	CCNNGG	2 cut(s)	161, 239
BseLI	CCNNNNNNNGG	1 cut(s)	167
BseMII	CTCAG	1 cut(s)	186
BseXI	GCAGC	1 cut(s)	38
BsgI	GTGCAG	1 cut(s)	20
BsiSI	CCGG	1 cut(s)	188
BslI	CCNNNNNNNGG	1 cut(s)	167
BspCNI	CTCAG	1 cut(s)	187
BspLI	GGNNCC	2 cut(s)	159, 192
BssECI	CCNNGG	2 cut(s)	161, 239
Bst2UI	CCWGG	2 cut(s)	162, 240
BstBAI	YACGTR	1 cut(s)	51
BstC8I	GCNNGC	2 cut(s)	31, 35
BstDEI	CTNAG	4 cut(s)	195, 257, 268, 273
BstMWI	GCNNNNNNNGC	1 cut(s)	23
BstNI	CCWGG	2 cut(s)	162, 240
BstSCI	CCNGG	2 cut(s)	160, 238
BstV1I	GCAGC	1 cut(s)	38
Cac8I	GCNNGC	2 cut(s)	31, 35
CviJI	RGCY	5 cut(s)	17, 29, 160, 187, 272
CviKI_1	RGCY	5 cut(s)	17, 29, 160, 187, 272
DdeI	CTNAG	4 cut(s)	195, 257, 268, 273
DraI	TTTAAA	1 cut(s)	141
EcoRII	CCWGG	2 cut(s)	160, 238
FaiI	YATR	3 cut(s)	66, 224, 249
Fnu4HI	GCNGC	1 cut(s)	27
Fsp4HI	GCNGC	1 cut(s)	27
FspBI	CTAG	3 cut(s)	6, 18, 132
GluI	GCNGC	1 cut(s)	27
HapII	CCGG	1 cut(s)	188
HinfI	GANTC	1 cut(s)	263
HpaII	CCGG	1 cut(s)	188
Hpy166II	GTNNAC	2 cut(s)	121, 205
Hpy8I	GTNNAC	2 cut(s)	121, 205
Hpy99I	CGWCG	1 cut(s)	109
HpyCH4IV	ACGT	2 cut(s)	50, 79
HpyCH4V	TGCA	2 cut(s)	26, 37
HpyF10VI	GCNNNNNNNGC	1 cut(s)	23
HpyF3I	CTNAG	4 cut(s)	195, 257, 268, 273
HpySE526I	ACGT	2 cut(s)	50, 79
LmnI	GCTCC	1 cut(s)	157
Lsp1109I	GCAGC	1 cut(s)	38
LweI	GCATC	2 cut(s)	13, 242
MaeI	CTAG	3 cut(s)	6, 18, 132
MaeII	ACGT	2 cut(s)	50, 79
MaeIII	GTNAC	1 cut(s)	93
MluCI	AATT	1 cut(s)	82
MmeI	TCCRAC	1 cut(s)	68
MnlI	CCTC	1 cut(s)	84
MseI	TTAA	2 cut(s)	128, 140
MspI	CCGG	1 cut(s)	188
MspR9I	CCNGG	2 cut(s)	162, 240
MvaI	CCWGG	2 cut(s)	162, 240
MwoI	GCNNNNNNNGC	1 cut(s)	23
NlaIV	GGNNCC	2 cut(s)	159, 192
PfeI	GAWTC	1 cut(s)	263
PkrI	GCNGC	1 cut(s)	28
Ppu21I	YACGTR	1 cut(s)	51
Psp6I	CCWGG	2 cut(s)	160, 238
PspGI	CCWGG	2 cut(s)	160, 238
PspN4I	GGNNCC	2 cut(s)	159, 192
SaqAI	TTAA	2 cut(s)	128, 140
SatI	GCNGC	1 cut(s)	27
ScrFI	CCNGG	2 cut(s)	162, 240
SetI	ASST	8 cut(s)	19, 31, 53, 82, 95, 180, 196, 274
SfaNI	GCATC	2 cut(s)	13, 242
Sse9I	AATT	1 cut(s)	82
SspMI	CTAG	3 cut(s)	6, 18, 132
StyD4I	CCNGG	2 cut(s)	160, 238
TaiI	ACGT	2 cut(s)	53, 82
TaqI	TCGA	1 cut(s)	72
TasI	AATT	1 cut(s)	82
TfiI	GAWTC	1 cut(s)	263
Tru1I	TTAA	2 cut(s)	128, 140
Tru9I	TTAA	2 cut(s)	128, 140
TseI	GCWGC	1 cut(s)	26
TspDTI	ATGAA	2 cut(s)	81, 225
TspGWI	ACGGA	1 cut(s)	93
XspI	CTAG	3 cut(s)	6, 18, 132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.