Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0002257

Physical Location & Seq

Genomic Coordinates Reverse (-)

31075055 .. 31076654

Gene Structure 1600 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1255100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGATAATCCCAGTAGATGATGAGTGGCATAAGCCTCTGGTTAATGGTAGCCTTGATCTTCCTACCCACCTCTTACACGGCTTGATTTACTGTAATGGGTTTGCTCACTTGGTCTGCATCAATGGACCCGAAGGGGGTTCAAAGCATCTCTATATGGCAGAGAGATTATGGATCTTTGGGACAGAATTTGCACTAATCTTCGAACCAGGAAAAATCACCGTTGAGGATGCCTCTAAGAAACGTTCAATGAATCTACGCGTTCTCCATGGTGTTGCTTATGGCCATTCTTGGTTTGGTAGGTGGGGTTACCAATTCTGCCATGGCAGTTTTGATGTGACAGAACACAATTATGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000212 GO:0000226 GO:0000228 GO:0000280 GO:0000785 GO:0000790 GO:0000791 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005719 GO:0006323 GO:0006355 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007059 GO:0007060 GO:0007140 GO:0007275 GO:0007276 GO:0008134 GO:0008150 GO:0009555 GO:0009889 GO:0009987 GO:0010032 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0030154 GO:0030261 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0033613 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044703 GO:0045132 GO:0048229 GO:0048232 GO:0048235 GO:0048285 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0051321 GO:0051704 GO:0055046 GO:0060255 GO:0065007 GO:0070013 GO:0070192 GO:0071103 GO:0071840 GO:0080090 GO:0097159 GO:0098813 GO:0140013 GO:1901363 GO:1903046 GO:1903506 GO:1990188 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD

Protein Analysis

119

Amino Acids

13.47

Weight (kDa)

6.1

Isoelectric Point (pI)

34.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002257)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66170
fragaria_vesca	FvH4_1g29990 FvH4_1g29990 FvH4_1g29990 FvH4_6g02390
malus_domestica	MD09G1267100.v1.1 MD17G1254900.v1.1 MD17G1255100.v1.1 MD17G1260200.v1.1
prunus_persica	Prupe.3G164800_v2.0.a1
pyrus_communis	pycom12401g00150 pycom461g00270
rosa_chinensis	RchiOBHm_Chr3g0450161 RchiOBHm_Chr3g0492331
rosa_laevigata	RLG00000022781 RLG00000022872 RLG00000022874 RLG00000022875 RLG00000025750
rosa_multiflora	Rmu_co8200976.1_g000001 Rmu_sc0003156.1_g000026 Rmu_sc0010184.1_g000005 Rmu_sc0010184.1_g000015 Rmu_sc0020297.1_g000001
rosa_roxburghii	Rroxscaffold_3G00226630 Rroxscaffold_6G00392410 Rroxscaffold_6G00427920
rosa_rugosa	Rorug02G0625900 Rorug03G0253300
rosa_samantha	Rh2AG397300 Rh2CG383900 Rh3AG025300 Rh3AG303200 Rh3BG025900 Rh3BG339200 Rh3BG339300 Rh3CG024800 Rh3CG336400 Rh3DG025900 Rh3DG327500 Rh3DG338500
rosa_wichuraiana	Rw3G002030 Rw3G026750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	258
AclI	AACGTT	1 cut(s)	241
AclWI	GGATC	1 cut(s)	179
AcoI	YGGCCR	1 cut(s)	280
AcsI	RAATTY	1 cut(s)	185
AfiI	CCNNNNNNNGG	1 cut(s)	134
AflIII	ACRYGT	1 cut(s)	256
AgsI	TTSAA	2 cut(s)	141, 246
AjnI	CCWGG	1 cut(s)	205
AlwI	GGATC	1 cut(s)	179
AoxI	GGCC	1 cut(s)	280
ApoI	RAATTY	1 cut(s)	185
AspS9I	GGNCC	1 cut(s)	125
AsuHPI	GGTGA	1 cut(s)	208
AsuII	TTCGAA	1 cut(s)	201
AvaII	GGWCC	1 cut(s)	125
BalI	TGGCCA	1 cut(s)	282
BceAI	ACGGC	1 cut(s)	94
BciT130I	CCWGG	1 cut(s)	207
Bme1390I	CCNGG	1 cut(s)	207
Bme18I	GGWCC	1 cut(s)	125
BmgT120I	GGNCC	1 cut(s)	125
BmiI	GGNNCC	1 cut(s)	127
BmrFI	CCNGG	1 cut(s)	207
BmrI	ACTGGG	1 cut(s)	5
BmsI	GCATC	3 cut(s)	126, 154, 217
BmuI	ACTGGG	1 cut(s)	5
BplI	GAGNNNNNCTC	2 cut(s)	215, 247
Bpu14I	TTCGAA	1 cut(s)	201
BsaJI	CCNNGG	2 cut(s)	265, 319
BsaXI	ACNNNNNCTCC	2 cut(s)	246, 276
Bsc4I	CCNNNNNNNGG	1 cut(s)	134
Bse1I	ACTGG	1 cut(s)	11
BseBI	CCWGG	1 cut(s)	207
BseDI	CCNNGG	2 cut(s)	265, 319
BseGI	GGATG	1 cut(s)	232
BseLI	CCNNNNNNNGG	1 cut(s)	134
BseNI	ACTGG	1 cut(s)	11
Bsh1236I	CGCG	1 cut(s)	258
BshFI	GGCC	1 cut(s)	282
BslFI	GGGAC	1 cut(s)	193
BslI	CCNNNNNNNGG	1 cut(s)	134
BsmFI	GGGAC	1 cut(s)	193
BsnI	GGCC	1 cut(s)	282
Bsp119I	TTCGAA	1 cut(s)	201
Bsp143I	GATC	2 cut(s)	55, 171
Bsp19I	CCATGG	2 cut(s)	265, 319
BspANI	GGCC	1 cut(s)	282
BspFNI	CGCG	1 cut(s)	258
BspLI	GGNNCC	1 cut(s)	127
BspPI	GGATC	1 cut(s)	179
BspT104I	TTCGAA	1 cut(s)	201
BsrI	ACTGG	1 cut(s)	11
BssECI	CCNNGG	2 cut(s)	265, 319
BssMI	GATC	2 cut(s)	55, 171
BssT1I	CCWWGG	2 cut(s)	265, 319
Bst2UI	CCWGG	1 cut(s)	207
Bst4CI	ACNGT	2 cut(s)	92, 220
BstBI	TTCGAA	1 cut(s)	201
BstDEI	CTNAG	1 cut(s)	234
BstDSI	CCRYGG	2 cut(s)	265, 319
BstEII	GGTNACC	1 cut(s)	305
BstF5I	GGATG	1 cut(s)	232
BstFNI	CGCG	1 cut(s)	258
BstKTI	GATC	2 cut(s)	58, 174
BstMBI	GATC	2 cut(s)	55, 171
BstNI	CCWGG	1 cut(s)	207
BstPI	GGTNACC	1 cut(s)	305
BstSCI	CCNGG	1 cut(s)	205
BstUI	CGCG	1 cut(s)	258
BstX2I	RGATCY	1 cut(s)	171
BstYI	RGATCY	1 cut(s)	171
BsuRI	GGCC	1 cut(s)	282
BtgI	CCRYGG	2 cut(s)	265, 319
BtsCI	GGATG	1 cut(s)	232
Cfr13I	GGNCC	1 cut(s)	125
CviAII	CATG	2 cut(s)	266, 320
CviJI	RGCY	4 cut(s)	34, 51, 81, 282
CviKI_1	RGCY	4 cut(s)	34, 51, 81, 282
DdeI	CTNAG	1 cut(s)	234
DpnI	GATC	2 cut(s)	57, 173
DpnII	GATC	2 cut(s)	55, 171
EaeI	YGGCCR	1 cut(s)	280
Eco130I	CCWWGG	2 cut(s)	265, 319
Eco47I	GGWCC	1 cut(s)	125
Eco91I	GGTNACC	1 cut(s)	305
EcoO65I	GGTNACC	1 cut(s)	305
EcoRII	CCWGG	1 cut(s)	205
EcoT14I	CCWWGG	2 cut(s)	265, 319
ErhI	CCWWGG	2 cut(s)	265, 319
FaeI	CATG	2 cut(s)	269, 323
FaiI	YATR	8 cut(s)	30, 153, 155, 169, 267, 279, 321, 351
FaqI	GGGAC	1 cut(s)	193
FatI	CATG	2 cut(s)	265, 319
FokI	GGATG	1 cut(s)	239
HaeIII	GGCC	1 cut(s)	282
Hin1II	CATG	2 cut(s)	269, 323
HinfI	GANTC	1 cut(s)	250
HphI	GGTGA	1 cut(s)	208
HpyAV	CCTTC	1 cut(s)	125
HpyCH4III	ACNGT	2 cut(s)	92, 220
HpyCH4IV	ACGT	1 cut(s)	241
HpyCH4V	TGCA	2 cut(s)	117, 191
HpyF3I	CTNAG	1 cut(s)	234
HpySE526I	ACGT	1 cut(s)	241
Hsp92II	CATG	2 cut(s)	269, 323
Kzo9I	GATC	2 cut(s)	55, 171
LpnPI	CCDG	4 cut(s)	23, 24, 192, 219
LweI	GCATC	3 cut(s)	126, 154, 217
MaeII	ACGT	1 cut(s)	241
MaeIII	GTNAC	2 cut(s)	305, 334
MalI	GATC	2 cut(s)	57, 173
MboI	GATC	2 cut(s)	55, 171
MboII	GAAGA	2 cut(s)	50, 190
MflI	RGATCY	1 cut(s)	171
MlsI	TGGCCA	1 cut(s)	282
MluCI	AATT	3 cut(s)	185, 311, 346
MluI	ACGCGT	1 cut(s)	256
MluNI	TGGCCA	1 cut(s)	282
MnlI	CCTC	4 cut(s)	45, 80, 217, 241
Mox20I	TGGCCA	1 cut(s)	282
MscI	TGGCCA	1 cut(s)	282
MseI	TTAA	1 cut(s)	42
MslI	CAYNNNNRTG	1 cut(s)	348
Msp20I	TGGCCA	1 cut(s)	282
MspR9I	CCNGG	1 cut(s)	207
MvaI	CCWGG	1 cut(s)	207
MvnI	CGCG	1 cut(s)	258
NcoI	CCATGG	2 cut(s)	265, 319
NdeII	GATC	2 cut(s)	55, 171
NlaIII	CATG	2 cut(s)	269, 323
NlaIV	GGNNCC	1 cut(s)	127
NmuCI	GTSAC	1 cut(s)	334
NspV	TTCGAA	1 cut(s)	201
PfeI	GAWTC	1 cut(s)	250
Psp1406I	AACGTT	1 cut(s)	241
Psp6I	CCWGG	1 cut(s)	205
PspEI	GGTNACC	1 cut(s)	305
PspGI	CCWGG	1 cut(s)	205
PspN4I	GGNNCC	1 cut(s)	127
PspPI	GGNCC	1 cut(s)	125
PsuI	RGATCY	1 cut(s)	171
RseI	CAYNNNNRTG	1 cut(s)	348
SaqAI	TTAA	1 cut(s)	42
Sau3AI	GATC	2 cut(s)	55, 171
Sau96I	GGNCC	1 cut(s)	125
ScrFI	CCNGG	1 cut(s)	207
SetI	ASST	3 cut(s)	72, 244, 302
SfaNI	GCATC	3 cut(s)	126, 154, 217
SfuI	TTCGAA	1 cut(s)	201
SinI	GGWCC	1 cut(s)	125
SmiMI	CAYNNNNRTG	1 cut(s)	348
Sse9I	AATT	3 cut(s)	185, 311, 346
StyD4I	CCNGG	1 cut(s)	205
StyI	CCWWGG	2 cut(s)	265, 319
TaaI	ACNGT	2 cut(s)	92, 220
TaiI	ACGT	1 cut(s)	244
TaqI	TCGA	1 cut(s)	201
TasI	AATT	3 cut(s)	185, 311, 346
TfiI	GAWTC	1 cut(s)	250
Tru1I	TTAA	1 cut(s)	42
Tru9I	TTAA	1 cut(s)	42
TseFI	GTSAC	1 cut(s)	334
Tsp45I	GTSAC	1 cut(s)	334
TspDTI	ATGAA	1 cut(s)	263
VpaK11BI	GGWCC	1 cut(s)	125
XapI	RAATTY	1 cut(s)	185
XcmI	CCANNNNNNNNNTGG	2 cut(s)	290, 317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.