Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0002257

Physical Location & Seq

Genomic Coordinates Reverse (-)

11949989 .. 11953225

Gene Structure 3237 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00392410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1935 bp

ATGTCGATGATGATTCCAAGCCTTGAAGCCTGCAAGAAGAGGAAGAGGAGGCCAAAGATTTATGGGTTCCATTCATTTGGGGAACCCGGCTACCCGATTCTTCCACTGGGTCCATTCCGTGATAACATTCGTCTCTTTCTTCAACAATGTGCAGAGCTTGAGAGTTACAGTATTCAGGGCATGCCCGTTTGGTGCACTCTTCTTGTTCATGACAACCGAAGCCTTGTTCTTCCTCTCTACACCATTGAAGAGAACGTCAAGACCTCCGACACCCCCTTCTGCGATTACTGCCGATGCACTGGTTGGAGTAACCATTTTGTATCGAAGAGAAAGTACCACATGATAATTCCAATGGATGATGACTGGAATAAGCCTTTGGATGATGGTATCTTGGATATTTCAACCCATCTCTTACATGGGTTAATTCACTGTAATGGGTTTGCTCATTTGCTATGCATCAATGGACTTGAAGGTGGTTCTAAGCATCTTTGTGGCAGAGAGCTCATGGATCTTTGGGATCGGATCTGCATTAATCTTCGAACCAGCTTTGGCGTCAAAGAGCACATTTATGAAAGAGCACTTGAGCTTCTCAGCTCATTAAAACTTGAAAAGATCATCCAAGATTTTAGTGACATGGACCAGTATGAAGAGCTGAAGAAAATTGTTCGTTACTACAGATATTTGAGTGAAACACAGTTAGTTACTATCAAAGATCTTCTCAGATTTATGCTTACTATCAAGGCTTGCTTTCCTGCACAGAGAAACTCGCTGCTTCCTACTGCAAAACCTGCAGATGTGATTGAGAATGCAAAACCTGCAACCAGAGAATCCGTTAAGATCAAGCCTCTGATAAAGGAAAAGTCTTCAAAGTATAGGAAGTTTGCTACTGTTGTTACTCACATGGATAGCAGATGGCCTGCCAGAAGACTAGAGTTTGCAGCAGATGTGATTGTGAATGCGCTGAAAGAAAAGAAAGAGAAGGACTTTAGAAATGGTGGGATGGCCAGGCAAGATGTGCGAGATGCAGCTAGGTTGCATATTGGAGATACAGGTTTGTTGGATTATGTGCTGAAATCACTGAACAATGTGGTTGTTGGGAATCAGGTTGTCTGCCGTTCAGTGAATCCAACCACTCGGATTTTGGAATATACGGTTCATGATCTTAATGATGGGGACAAAGTGTCTGAACCTGAGAAAGAGATGCTTCCCCTACCCCCTCCACCAGCTGCTCCAGTTCCTGGAATTGATGTTTACAGTGATGTTCTTTATTTGTATGAGCATGTACTGTTGGGATATCCAGAATCTGGAATGCTAGAGTTGGCTACACAAGCAGTATTGGACACTAAGCACTTTGTAAAGGAATGTCCATTTAGGGATGAGAAAGAGCAGTTACTGACATTGTTTTGCCAAATCTTGCCAAGTTTGACTGATAAGGAAATTGAATTCAAGAGGGAGTTGCCTCCAGGTGAGATAGTGGTAATGCCACTGGATGCAACTGTTGGAGAGCTAAAGCAGGAAGCTGAGAGTGCAATGAGGGATACATATTGTATCACAGAACAGTTTGTGGTGATGGAAATCAAAGGCTTGGAGGAATCAGATGATATGGAAGTGCTTTCTGGAGCAGTTCAATCGGGTACAGAGGTTGGAGTGAGAGGGAGTGGGATAGATTTAGACACACCGTTGAGGTTCCAAGGGGGATCGGACACATGGATGGTGAGATGTGAATGTGGGGCTACAGATGATGATGGTGAAAGGATGGTGGCCTGTGATATATGCGAAGTGTGGCAGCATACACGCTGCTGTGGAATGGAGGATGCTGATGAAGTCCCACGTCTGTTCATTTGCTCAACATGTTACGTTTCACTTGTTCCGCCTAAAACTGAACCTGCAGCTAAATTTGACTGTTCCACTGCGTTTCTGGAGTGGAGACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000212 GO:0000226 GO:0000228 GO:0000280 GO:0000785 GO:0000790 GO:0000791 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005719 GO:0006323 GO:0006355 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007059 GO:0007060 GO:0007140 GO:0007275 GO:0007276 GO:0008134 GO:0008150 GO:0009555 GO:0009889 GO:0009987 GO:0010032 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0030154 GO:0030261 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0033613 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044703 GO:0045132 GO:0048229 GO:0048232 GO:0048235 GO:0048285 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0051321 GO:0051704 GO:0055046 GO:0060255 GO:0065007 GO:0070013 GO:0070192 GO:0071103 GO:0071840 GO:0080090 GO:0097159 GO:0098813 GO:0140013 GO:1901363 GO:1903046 GO:1903506 GO:1990188 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD

Protein Analysis

644

Amino Acids

73.22

Weight (kDa)

5.39

Isoelectric Point (pI)

41.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_plant_repro	PF25874	304 - 387	1.1e-34	Winged helix-turn-helix domain in plant reproductive proteins
Ubiquitin_At1g33420	PF25565	462 - 554	4.5e-30	At1g33420-like, ubiquitin-like domain
PHD	PF00628	574 - 618	5.4e-06	PHD-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002257)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66170
fragaria_vesca	FvH4_1g29990 FvH4_1g29990 FvH4_1g29990 FvH4_6g02390
malus_domestica	MD09G1267100.v1.1 MD17G1254900.v1.1 MD17G1255100.v1.1 MD17G1260200.v1.1
prunus_persica	Prupe.3G164800_v2.0.a1
pyrus_communis	pycom12401g00150 pycom461g00270
rosa_chinensis	RchiOBHm_Chr3g0450161 RchiOBHm_Chr3g0492331
rosa_laevigata	RLG00000022781 RLG00000022872 RLG00000022874 RLG00000022875 RLG00000025750
rosa_multiflora	Rmu_co8200976.1_g000001 Rmu_sc0003156.1_g000026 Rmu_sc0010184.1_g000005 Rmu_sc0010184.1_g000015 Rmu_sc0020297.1_g000001
rosa_roxburghii	Rroxscaffold_3G00226630 Rroxscaffold_6G00392410 Rroxscaffold_6G00427920
rosa_rugosa	Rorug02G0625900 Rorug03G0253300
rosa_samantha	Rh2AG397300 Rh2CG383900 Rh3AG025300 Rh3AG303200 Rh3BG025900 Rh3BG339200 Rh3BG339300 Rh3CG024800 Rh3CG336400 Rh3DG025900 Rh3DG327500 Rh3DG338500
rosa_wichuraiana	Rw3G002030 Rw3G026750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	796, 823, 1894
AccB7I	CCANNNNNTGG	2 cut(s)	1238, 1304
AciI	CCGC	1 cut(s)	1871
AclWI	GGATC	4 cut(s)	516, 525, 530, 1705
AcoI	YGGCCR	1 cut(s)	1002
AcsI	RAATTY	2 cut(s)	1442, 1895
AcuI	CTGAAG	1 cut(s)	674
AcyI	GRCGYC	1 cut(s)	552
AfaI	GTAC	3 cut(s)	335, 1284, 1636
AfiI	CCNNNNNNNGG	2 cut(s)	1238, 1304
AflIII	ACRYGT	1 cut(s)	1850
AhdI	GACNNNNNGTC	1 cut(s)	1180
AjiI	CACGTC	1 cut(s)	1832
AjnI	CCWGG	3 cut(s)	1004, 1237, 1462
AjuI	GAANNNNNNNTTGG	2 cut(s)	359, 391
Alw21I	GWGCWC	4 cut(s)	197, 504, 564, 580
Alw26I	GTCTC	2 cut(s)	137, 1921
Alw44I	GTGCAC	1 cut(s)	193
AlwI	GGATC	4 cut(s)	516, 525, 530, 1705
AlwNI	CAGNNNCTG	3 cut(s)	1238, 1304, 1393
AoxI	GGCC	4 cut(s)	50, 914, 1002, 1761
ApaLI	GTGCAC	1 cut(s)	193
ApeKI	GCWGC	7 cut(s)	769, 938, 1025, 1226, 1786, 1797, 1889
ApoI	RAATTY	2 cut(s)	1442, 1895
AseI	ATTAAT	1 cut(s)	531
AspLEI	GCGC	1 cut(s)	961
AspS9I	GGNCC	2 cut(s)	110, 637
AsuC2I	CCSGG	1 cut(s)	87
AsuHPI	GGTGA	4 cut(s)	1478, 1579, 1726, 1760
AsuII	TTCGAA	1 cut(s)	538
AvaII	GGWCC	2 cut(s)	110, 637
BaeGI	GKGCMC	1 cut(s)	197
BaeI	ACNNNNGTAYC	2 cut(s)	1626, 1659
BalI	TGGCCA	1 cut(s)	1004
BanII	GRGCYC	1 cut(s)	504
BarI	GAAGNNNNNNTAC	2 cut(s)	317, 349
BbsI	GAAGAC	2 cut(s)	855, 931
Bbv12I	GWGCWC	4 cut(s)	197, 504, 564, 580
BbvI	GCAGC	7 cut(s)	756, 950, 1037, 1213, 1784, 1798, 1901
BccI	CCATC	9 cut(s)	377, 414, 906, 994, 1163, 1564, 1705, 1739, 1750
BceAI	ACGGC	1 cut(s)	1098
BcgI	CGANNNNNNTGC	2 cut(s)	1611, 1645
BciT130I	CCWGG	3 cut(s)	1006, 1239, 1464
BciVI	GTATCC	1 cut(s)	1531
BcnI	CCSGG	1 cut(s)	87
BcoDI	GTCTC	2 cut(s)	137, 1921
BfaI	CTAG	3 cut(s)	929, 1029, 1313
BfmI	CTRYAG	4 cut(s)	673, 789, 1734, 1887
BfuAI	ACCTGC	3 cut(s)	796, 823, 1894
BfuI	GTATCC	1 cut(s)	1531
BglII	AGATCT	1 cut(s)	712
BisI	GCNGC	7 cut(s)	770, 939, 1026, 1227, 1787, 1798, 1890
BlsI	GCNGC	7 cut(s)	771, 940, 1027, 1228, 1788, 1799, 1891
Bme1390I	CCNGG	4 cut(s)	87, 1006, 1239, 1464
Bme18I	GGWCC	2 cut(s)	110, 637
BmeRI	GACNNNNNGTC	1 cut(s)	1180
BmgBI	CACGTC	1 cut(s)	1832
BmgT120I	GGNCC	2 cut(s)	110, 637
BmiI	GGNNCC	4 cut(s)	68, 84, 111, 1688
BmrFI	CCNGG	4 cut(s)	87, 1006, 1239, 1464
BmrI	ACTGGG	1 cut(s)	116
BmsI	GCATC	7 cut(s)	284, 465, 493, 1012, 1191, 1480, 1804
BmuI	ACTGGG	1 cut(s)	116
BpiI	GAAGAC	2 cut(s)	855, 931
BpmI	CTGGAG	3 cut(s)	1215, 1446, 1638
Bpu14I	TTCGAA	1 cut(s)	538
BpuEI	CTTGAG	2 cut(s)	179, 602
BpuMI	CCSGG	1 cut(s)	87
BsaBI	GATNNNNATC	1 cut(s)	1574
BsaHI	GRCGYC	1 cut(s)	552
BsaJI	CCNNGG	1 cut(s)	1690
Bsc4I	CCNNNNNNNGG	2 cut(s)	1238, 1304
Bse1I	ACTGG	6 cut(s)	111, 304, 368, 640, 1232, 1491
Bse3DI	GCAATG	1 cut(s)	1536
Bse8I	GATNNNNATC	1 cut(s)	1574
BseBI	CCWGG	3 cut(s)	1006, 1239, 1464
BseDI	CCNNGG	1 cut(s)	1690
BseGI	GGATG	9 cut(s)	361, 385, 615, 1005, 1381, 1495, 1716, 1761, 1819
BseJI	GATNNNNATC	1 cut(s)	1574
BseLI	CCNNNNNNNGG	2 cut(s)	1238, 1304
BseMI	GCAATG	1 cut(s)	1536
BseMII	CTCAG	4 cut(s)	604, 733, 1182, 1512
BseNI	ACTGG	6 cut(s)	111, 304, 368, 640, 1232, 1491
BseRI	GAGGAG	1 cut(s)	61
BseSI	GKGCMC	1 cut(s)	197
BseXI	GCAGC	7 cut(s)	756, 950, 1037, 1213, 1784, 1798, 1901
BsgI	GTGCAG	2 cut(s)	171, 738
BshFI	GGCC	4 cut(s)	52, 916, 1004, 1763
BsiHKAI	GWGCWC	4 cut(s)	197, 504, 564, 580
BsiSI	CCGG	1 cut(s)	87
BslFI	GGGAC	2 cut(s)	1187, 1811
BslI	CCNNNNNNNGG	2 cut(s)	1238, 1304
BsmAI	GTCTC	2 cut(s)	137, 1921
BsmBI	CGTCTC	1 cut(s)	137
BsmFI	GGGAC	2 cut(s)	1187, 1811
BsmI	GAATGC	3 cut(s)	811, 961, 1314
BsnI	GGCC	4 cut(s)	52, 916, 1004, 1763
Bsp119I	TTCGAA	1 cut(s)	538
Bsp1286I	GDGCHC	4 cut(s)	197, 504, 564, 580
Bsp143I	GATC	8 cut(s)	508, 517, 522, 612, 712, 837, 1159, 1697
BspACI	CCGC	1 cut(s)	1871
BspANI	GGCC	4 cut(s)	52, 916, 1004, 1763
BspCNI	CTCAG	4 cut(s)	603, 732, 1183, 1513
BspHI	TCATGA	2 cut(s)	208, 1156
BspLI	GGNNCC	4 cut(s)	68, 84, 111, 1688
BspMAI	CTGCAG	2 cut(s)	793, 1891
BspMI	ACCTGC	3 cut(s)	796, 823, 1894
BspPI	GGATC	4 cut(s)	516, 525, 530, 1705
BspQI	GCTCTTC	1 cut(s)	642
BspT104I	TTCGAA	1 cut(s)	538
BsrDI	GCAATG	1 cut(s)	1536
BsrI	ACTGG	6 cut(s)	111, 304, 368, 640, 1232, 1491
BssECI	CCNNGG	1 cut(s)	1690
BssMI	GATC	8 cut(s)	508, 517, 522, 612, 712, 837, 1159, 1697
BssNI	GRCGYC	1 cut(s)	552
BssT1I	CCWWGG	1 cut(s)	1690
Bst2UI	CCWGG	3 cut(s)	1006, 1239, 1464
Bst6I	CTCTTC	6 cut(s)	32, 38, 204, 243, 320, 642
BstACI	GRCGYC	1 cut(s)	552
BstAPI	GCANNNNNTGC	3 cut(s)	788, 815, 1015
BstBI	TTCGAA	1 cut(s)	538
BstC8I	GCNNGC	4 cut(s)	31, 182, 745, 918
BstDEI	CTNAG	6 cut(s)	480, 590, 719, 1191, 1344, 1521
BstF5I	GGATG	9 cut(s)	361, 385, 615, 1005, 1381, 1495, 1716, 1761, 1819
BstHHI	GCGC	1 cut(s)	961
BstKTI	GATC	8 cut(s)	511, 520, 525, 615, 715, 840, 1162, 1700
BstMAI	GTCTC	2 cut(s)	137, 1921
BstMBI	GATC	8 cut(s)	508, 517, 522, 612, 712, 837, 1159, 1697
BstMWI	GCNNNNNNNGC	6 cut(s)	288, 788, 815, 1015, 1328, 1526
BstNI	CCWGG	3 cut(s)	1006, 1239, 1464
BstNSI	RCATGY	3 cut(s)	184, 1283, 1854
BstSCI	CCNGG	4 cut(s)	85, 1004, 1237, 1462
BstSFI	CTRYAG	4 cut(s)	673, 789, 1734, 1887
BstSLI	GKGCMC	1 cut(s)	197
BstV1I	GCAGC	7 cut(s)	756, 950, 1037, 1213, 1784, 1798, 1901
BstV2I	GAAGAC	2 cut(s)	855, 931
BstX2I	RGATCY	3 cut(s)	508, 522, 712
BstXI	CCANNNNNNTGG	1 cut(s)	77
BstYI	RGATCY	3 cut(s)	508, 522, 712
BsuI	GTATCC	1 cut(s)	1531
BsuRI	GGCC	4 cut(s)	52, 916, 1004, 1763
BtrI	CACGTC	1 cut(s)	1832
BtsCI	GGATG	9 cut(s)	361, 385, 615, 1005, 1381, 1495, 1716, 1761, 1819
BtsI	GCAGTG	1 cut(s)	1908
BtsIMutI	CAGTG	8 cut(s)	104, 297, 427, 1076, 1125, 1261, 1484, 1908
BveI	ACCTGC	3 cut(s)	796, 823, 1894
Cac8I	GCNNGC	4 cut(s)	31, 182, 745, 918
CaiI	CAGNNNCTG	3 cut(s)	1238, 1304, 1393
CciI	TCATGA	2 cut(s)	208, 1156
CfoI	GCGC	1 cut(s)	961
Cfr13I	GGNCC	2 cut(s)	110, 637
CseI	GACGC	1 cut(s)	541
Csp6I	GTAC	3 cut(s)	334, 1283, 1635
CviQI	GTAC	3 cut(s)	334, 1283, 1635
DdeI	CTNAG	6 cut(s)	480, 590, 719, 1191, 1344, 1521
DpnI	GATC	8 cut(s)	510, 519, 524, 614, 714, 839, 1161, 1699
DpnII	GATC	8 cut(s)	508, 517, 522, 612, 712, 837, 1159, 1697
DriI	GACNNNNNGTC	1 cut(s)	1180
EaeI	YGGCCR	1 cut(s)	1002
Eam1104I	CTCTTC	6 cut(s)	32, 38, 204, 243, 320, 642
Eam1105I	GACNNNNNGTC	1 cut(s)	1180
EarI	CTCTTC	6 cut(s)	32, 38, 204, 243, 320, 642
EciI	GGCGGA	1 cut(s)	1860
Ecl136II	GAGCTC	1 cut(s)	502
Eco130I	CCWWGG	1 cut(s)	1690
Eco24I	GRGCYC	1 cut(s)	504
Eco32I	GATATC	1 cut(s)	1295
Eco47I	GGWCC	2 cut(s)	110, 637
Eco53kI	GAGCTC	1 cut(s)	502
Eco57I	CTGAAG	1 cut(s)	674
EcoICRI	GAGCTC	1 cut(s)	502
EcoRI	GAATTC	1 cut(s)	1442
EcoRII	CCWGG	3 cut(s)	1004, 1237, 1462
EcoRV	GATATC	1 cut(s)	1295
EcoT14I	CCWWGG	1 cut(s)	1690
EcoT22I	ATGCAT	1 cut(s)	458
EcoT38I	GRGCYC	1 cut(s)	504
ErhI	CCWWGG	1 cut(s)	1690
Esp3I	CGTCTC	1 cut(s)	137
FalI	AAGNNNNNCTT	4 cut(s)	731, 763, 1188, 1220
FaqI	GGGAC	2 cut(s)	1187, 1811
Fnu4HI	GCNGC	7 cut(s)	770, 939, 1026, 1227, 1787, 1798, 1890
FokI	GGATG	9 cut(s)	368, 392, 602, 1012, 1388, 1502, 1723, 1768, 1826
FriOI	GRGCYC	1 cut(s)	504
Fsp4HI	GCNGC	7 cut(s)	770, 939, 1026, 1227, 1787, 1798, 1890
FspBI	CTAG	3 cut(s)	929, 1029, 1313
GlaI	GCGC	1 cut(s)	960
GluI	GCNGC	7 cut(s)	770, 939, 1026, 1227, 1787, 1798, 1890
GsuI	CTGGAG	3 cut(s)	1215, 1446, 1638
HaeIII	GGCC	4 cut(s)	52, 916, 1004, 1763
HapII	CCGG	1 cut(s)	87
HgaI	GACGC	1 cut(s)	541
HhaI	GCGC	1 cut(s)	961
Hin1I	GRCGYC	1 cut(s)	552
Hin6I	GCGC	1 cut(s)	959
HinP1I	GCGC	1 cut(s)	959
HinfI	GANTC	7 cut(s)	13, 97, 827, 1099, 1123, 1301, 1592
HpaII	CCGG	1 cut(s)	87
HphI	GGTGA	4 cut(s)	1478, 1579, 1726, 1760
Hpy166II	GTNNAC	2 cut(s)	195, 1252
Hpy188I	TCNGA	8 cut(s)	268, 522, 722, 849, 1137, 1186, 1597, 1702
Hpy188III	TCNNGA	8 cut(s)	209, 259, 1157, 1298, 1305, 1447, 1617, 1919
Hpy8I	GTNNAC	2 cut(s)	195, 1252
HpyAV	CCTTC	3 cut(s)	286, 464, 973
HpyCH4IV	ACGT	3 cut(s)	255, 1831, 1857
HpyF10VI	GCNNNNNNNGC	6 cut(s)	288, 788, 815, 1015, 1328, 1526
HpyF3I	CTNAG	6 cut(s)	480, 590, 719, 1191, 1344, 1521
HpySE526I	ACGT	3 cut(s)	255, 1831, 1857
Hsp92I	GRCGYC	1 cut(s)	552
HspAI	GCGC	1 cut(s)	959
Kzo9I	GATC	8 cut(s)	508, 517, 522, 612, 712, 837, 1159, 1697
LguI	GCTCTTC	1 cut(s)	642
LmnI	GCTCC	2 cut(s)	1234, 1619
Lsp1109I	GCAGC	7 cut(s)	756, 950, 1037, 1213, 1784, 1798, 1901
LweI	GCATC	7 cut(s)	284, 465, 493, 1012, 1191, 1480, 1804
MaeI	CTAG	3 cut(s)	929, 1029, 1313
MaeII	ACGT	3 cut(s)	255, 1831, 1857
MaeIII	GTNAC	8 cut(s)	164, 308, 629, 668, 700, 892, 1389, 1853
MalI	GATC	8 cut(s)	510, 519, 524, 614, 714, 839, 1161, 1699
MboI	GATC	8 cut(s)	508, 517, 522, 612, 712, 837, 1159, 1697
MflI	RGATCY	3 cut(s)	508, 522, 712
MhlI	GDGCHC	4 cut(s)	197, 504, 564, 580
MlsI	TGGCCA	1 cut(s)	1004
MluCI	AATT	7 cut(s)	345, 423, 660, 1242, 1437, 1442, 1895
MluNI	TGGCCA	1 cut(s)	1004
MmeI	TCCRAC	6 cut(s)	284, 291, 1038, 1151, 1480, 1624
Mox20I	TGGCCA	1 cut(s)	1004
Mph1103I	ATGCAT	1 cut(s)	458
MscI	TGGCCA	1 cut(s)	1004
MseI	TTAA	5 cut(s)	422, 531, 599, 834, 1164
MslI	CAYNNNNRTG	4 cut(s)	432, 489, 567, 1709
Msp20I	TGGCCA	1 cut(s)	1004
MspA1I	CMGCKG	1 cut(s)	1226
MspI	CCGG	1 cut(s)	87
MspR9I	CCNGG	4 cut(s)	87, 1006, 1239, 1464
Mva1269I	GAATGC	3 cut(s)	811, 961, 1314
MvaI	CCWGG	3 cut(s)	1006, 1239, 1464
MwoI	GCNNNNNNNGC	6 cut(s)	288, 788, 815, 1015, 1328, 1526
NciI	CCSGG	1 cut(s)	87
NdeII	GATC	8 cut(s)	508, 517, 522, 612, 712, 837, 1159, 1697
NlaIV	GGNNCC	4 cut(s)	68, 84, 111, 1688
NmuCI	GTSAC	1 cut(s)	629
NsiI	ATGCAT	1 cut(s)	458
NspI	RCATGY	3 cut(s)	184, 1283, 1854
NspV	TTCGAA	1 cut(s)	538
PaeI	GCATGC	1 cut(s)	184
PagI	TCATGA	2 cut(s)	208, 1156
PciI	ACATGT	1 cut(s)	1850
PciSI	GCTCTTC	1 cut(s)	642
PctI	GAATGC	3 cut(s)	811, 961, 1314
PfeI	GAWTC	7 cut(s)	13, 97, 827, 1099, 1123, 1301, 1592
PflMI	CCANNNNNTGG	2 cut(s)	1238, 1304
PfoI	TCCNGGA	1 cut(s)	1237
PkrI	GCNGC	7 cut(s)	771, 940, 1027, 1228, 1788, 1799, 1891
PscI	ACATGT	1 cut(s)	1850
PshBI	ATTAAT	1 cut(s)	531
Psp124BI	GAGCTC	1 cut(s)	504
Psp6I	CCWGG	3 cut(s)	1004, 1237, 1462
PspGI	CCWGG	3 cut(s)	1004, 1237, 1462
PspN4I	GGNNCC	4 cut(s)	68, 84, 111, 1688
PspPI	GGNCC	2 cut(s)	110, 637
PstI	CTGCAG	2 cut(s)	793, 1891
PstNI	CAGNNNCTG	3 cut(s)	1238, 1304, 1393
PsuI	RGATCY	3 cut(s)	508, 522, 712
PvuII	CAGCTG	1 cut(s)	1226
RsaI	GTAC	3 cut(s)	335, 1284, 1636
RsaNI	GTAC	3 cut(s)	334, 1283, 1635
RseI	CAYNNNNRTG	4 cut(s)	432, 489, 567, 1709
SacI	GAGCTC	1 cut(s)	504
SapI	GCTCTTC	1 cut(s)	642
SaqAI	TTAA	5 cut(s)	422, 531, 599, 834, 1164
SatI	GCNGC	7 cut(s)	770, 939, 1026, 1227, 1787, 1798, 1890
Sau3AI	GATC	8 cut(s)	508, 517, 522, 612, 712, 837, 1159, 1697
Sau96I	GGNCC	2 cut(s)	110, 637
ScrFI	CCNGG	4 cut(s)	87, 1006, 1239, 1464
SduI	GDGCHC	4 cut(s)	197, 504, 564, 580
SfaNI	GCATC	7 cut(s)	284, 465, 493, 1012, 1191, 1480, 1804
SfcI	CTRYAG	4 cut(s)	673, 789, 1734, 1887
SfuI	TTCGAA	1 cut(s)	538
SinI	GGWCC	2 cut(s)	110, 637
SmiMI	CAYNNNNRTG	4 cut(s)	432, 489, 567, 1709
SmlI	CTYRAG	2 cut(s)	158, 581
SmoI	CTYRAG	2 cut(s)	158, 581
SphI	GCATGC	1 cut(s)	184
Sse9I	AATT	7 cut(s)	345, 423, 660, 1242, 1437, 1442, 1895
SsiI	CCGC	1 cut(s)	1871
SspMI	CTAG	3 cut(s)	929, 1029, 1313
SstI	GAGCTC	1 cut(s)	504
StyD4I	CCNGG	4 cut(s)	85, 1004, 1237, 1462
StyI	CCWWGG	1 cut(s)	1690
TaiI	ACGT	3 cut(s)	258, 1834, 1860
TaqI	TCGA	3 cut(s)	5, 323, 538
TasI	AATT	7 cut(s)	345, 423, 660, 1242, 1437, 1442, 1895
TatI	WGTACW	1 cut(s)	1282
TfiI	GAWTC	7 cut(s)	13, 97, 827, 1099, 1123, 1301, 1592
Tru1I	TTAA	5 cut(s)	422, 531, 599, 834, 1164
Tru9I	TTAA	5 cut(s)	422, 531, 599, 834, 1164
TscAI	CASTG	8 cut(s)	111, 304, 434, 1083, 1125, 1261, 1491, 1915
TseFI	GTSAC	1 cut(s)	629
TseI	GCWGC	7 cut(s)	769, 938, 1025, 1226, 1786, 1797, 1889
Tsp45I	GTSAC	1 cut(s)	629
TspDTI	ATGAA	7 cut(s)	63, 197, 585, 660, 1145, 1828, 1836
TspGWI	ACGGA	2 cut(s)	107, 820
TspRI	CASTG	8 cut(s)	111, 304, 434, 1083, 1125, 1261, 1491, 1915
Van91I	CCANNNNNTGG	2 cut(s)	1238, 1304
VneI	GTGCAC	1 cut(s)	193
VpaK11BI	GGWCC	2 cut(s)	110, 637
VspI	ATTAAT	1 cut(s)	531
XapI	RAATTY	2 cut(s)	1442, 1895
XceI	RCATGY	3 cut(s)	184, 1283, 1854
XcmI	CCANNNNNNNNNTGG	3 cut(s)	413, 1138, 1915
XspI	CTAG	3 cut(s)	929, 1029, 1313
Zsp2I	ATGCAT	1 cut(s)	458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.