Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0002257

Physical Location & Seq

Genomic Coordinates Forward (+)

36305053 .. 36306758

Gene Structure 1706 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG339200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGTCGATGATGATTCCAAGCCTTGAAGCCTGCAAGAAGAGGAAGCGAAGGCCAAAGATTTATGGGTTCCATTCATTTGGGGAACCCGGCTACCCGATTCTTCCATTGGGTCCATTCCGTGATAACATTCGTCTCTTTCTTCAACAATGTGCAGAGCTTGAGAGTTACAGTGTTCAGGGCATGCCCGTTTGGTGCACTCTTCTTGTTCATGACAACCGAAGCCTTGTTCTTCCTCTCTACACCATTGAAGAGAACGTCAAGACCTCCGACACCCCCTTCTGCGATTACTGCCGATGCACTGGTTGGAGTAACCATTTTGTATCGAAGAGAAAGTACCACATGATAATTCCAATGGATGATGACTGGAATAAGCCTTTGGATGATGGTATCTTGGATGTTTCAACCCATCTCTTACATGGGTTAATTCACTGTAATGGGTTTGCTCATTTGCTATGCATCAATGGACTTGAAGGTGGTTCTAAGCATCTTTGTGGCAGAGAGCTCATGGATCTTTGGGATCGGATCTGCATTAATCTTCGAACCAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000212 GO:0000226 GO:0000228 GO:0000280 GO:0000785 GO:0000790 GO:0000791 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005719 GO:0006323 GO:0006355 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007059 GO:0007060 GO:0007140 GO:0007275 GO:0007276 GO:0008134 GO:0008150 GO:0009555 GO:0009889 GO:0009987 GO:0010032 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0030154 GO:0030261 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0033613 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044703 GO:0045132 GO:0048229 GO:0048232 GO:0048235 GO:0048285 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0051321 GO:0051704 GO:0055046 GO:0060255 GO:0065007 GO:0070013 GO:0070192 GO:0071103 GO:0071840 GO:0080090 GO:0097159 GO:0098813 GO:0140013 GO:1901363 GO:1903046 GO:1903506 GO:1990188 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD

Protein Analysis

182

Amino Acids

21.04

Weight (kDa)

7.59

Isoelectric Point (pI)

52.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002257)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66170
fragaria_vesca	FvH4_1g29990 FvH4_1g29990 FvH4_1g29990 FvH4_6g02390
malus_domestica	MD09G1267100.v1.1 MD17G1254900.v1.1 MD17G1255100.v1.1 MD17G1260200.v1.1
prunus_persica	Prupe.3G164800_v2.0.a1
pyrus_communis	pycom12401g00150 pycom461g00270
rosa_chinensis	RchiOBHm_Chr3g0450161 RchiOBHm_Chr3g0492331
rosa_laevigata	RLG00000022781 RLG00000022872 RLG00000022874 RLG00000022875 RLG00000025750
rosa_multiflora	Rmu_co8200976.1_g000001 Rmu_sc0003156.1_g000026 Rmu_sc0010184.1_g000005 Rmu_sc0010184.1_g000015 Rmu_sc0020297.1_g000001
rosa_roxburghii	Rroxscaffold_3G00226630 Rroxscaffold_6G00392410 Rroxscaffold_6G00427920
rosa_rugosa	Rorug02G0625900 Rorug03G0253300
rosa_samantha	Rh2AG397300 Rh2CG383900 Rh3AG025300 Rh3AG303200 Rh3BG025900 Rh3BG339200 Rh3BG339300 Rh3CG024800 Rh3CG336400 Rh3DG025900 Rh3DG327500 Rh3DG338500
rosa_wichuraiana	Rw3G002030 Rw3G026750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	516, 525, 530
AfaI	GTAC	1 cut(s)	335
AgsI	TTSAA	5 cut(s)	26, 143, 248, 402, 470
AjnI	CCWGG	1 cut(s)	542
AjuI	GAANNNNNNNTTGG	2 cut(s)	359, 391
AluBI	AGCT	2 cut(s)	157, 502
AluI	AGCT	2 cut(s)	157, 502
Alw21I	GWGCWC	2 cut(s)	197, 504
Alw26I	GTCTC	1 cut(s)	137
Alw44I	GTGCAC	1 cut(s)	193
AlwI	GGATC	3 cut(s)	516, 525, 530
AoxI	GGCC	1 cut(s)	50
ApaLI	GTGCAC	1 cut(s)	193
AseI	ATTAAT	1 cut(s)	531
AspS9I	GGNCC	1 cut(s)	110
AsuC2I	CCSGG	1 cut(s)	87
AsuII	TTCGAA	1 cut(s)	538
AvaII	GGWCC	1 cut(s)	110
BaeGI	GKGCMC	1 cut(s)	197
BanII	GRGCYC	1 cut(s)	504
BarI	GAAGNNNNNNTAC	2 cut(s)	317, 349
Bbv12I	GWGCWC	2 cut(s)	197, 504
BccI	CCATC	2 cut(s)	377, 414
BciT130I	CCWGG	1 cut(s)	544
BcnI	CCSGG	1 cut(s)	87
BcoDI	GTCTC	1 cut(s)	137
Bme1390I	CCNGG	2 cut(s)	87, 544
Bme18I	GGWCC	1 cut(s)	110
BmgT120I	GGNCC	1 cut(s)	110
BmiI	GGNNCC	3 cut(s)	68, 84, 111
BmrFI	CCNGG	2 cut(s)	87, 544
BmsI	GCATC	3 cut(s)	284, 465, 493
Bpu14I	TTCGAA	1 cut(s)	538
BpuEI	CTTGAG	1 cut(s)	179
BpuMI	CCSGG	1 cut(s)	87
Bse1I	ACTGG	2 cut(s)	304, 368
BseBI	CCWGG	1 cut(s)	544
BseGI	GGATG	3 cut(s)	361, 385, 400
BseNI	ACTGG	2 cut(s)	304, 368
BseSI	GKGCMC	1 cut(s)	197
BsgI	GTGCAG	1 cut(s)	171
BshFI	GGCC	1 cut(s)	52
BsiHKAI	GWGCWC	2 cut(s)	197, 504
BsiSI	CCGG	1 cut(s)	87
BsmAI	GTCTC	1 cut(s)	137
BsmBI	CGTCTC	1 cut(s)	137
BsnI	GGCC	1 cut(s)	52
Bsp119I	TTCGAA	1 cut(s)	538
Bsp1286I	GDGCHC	2 cut(s)	197, 504
Bsp143I	GATC	3 cut(s)	508, 517, 522
BspANI	GGCC	1 cut(s)	52
BspHI	TCATGA	1 cut(s)	208
BspLI	GGNNCC	3 cut(s)	68, 84, 111
BspPI	GGATC	3 cut(s)	516, 525, 530
BspT104I	TTCGAA	1 cut(s)	538
BsrI	ACTGG	2 cut(s)	304, 368
BssMI	GATC	3 cut(s)	508, 517, 522
Bst2UI	CCWGG	1 cut(s)	544
Bst4CI	ACNGT	2 cut(s)	170, 431
Bst6I	CTCTTC	4 cut(s)	32, 204, 243, 320
BstBI	TTCGAA	1 cut(s)	538
BstC8I	GCNNGC	2 cut(s)	31, 182
BstDEI	CTNAG	1 cut(s)	480
BstF5I	GGATG	3 cut(s)	361, 385, 400
BstKTI	GATC	3 cut(s)	511, 520, 525
BstMAI	GTCTC	1 cut(s)	137
BstMBI	GATC	3 cut(s)	508, 517, 522
BstMWI	GCNNNNNNNGC	1 cut(s)	288
BstNI	CCWGG	1 cut(s)	544
BstNSI	RCATGY	1 cut(s)	184
BstSCI	CCNGG	2 cut(s)	85, 542
BstSLI	GKGCMC	1 cut(s)	197
BstX2I	RGATCY	2 cut(s)	508, 522
BstXI	CCANNNNNNTGG	1 cut(s)	77
BstYI	RGATCY	2 cut(s)	508, 522
BsuRI	GGCC	1 cut(s)	52
BtsCI	GGATG	3 cut(s)	361, 385, 400
BtsIMutI	CAGTG	3 cut(s)	175, 297, 427
Cac8I	GCNNGC	2 cut(s)	31, 182
CciI	TCATGA	1 cut(s)	208
Cfr13I	GGNCC	1 cut(s)	110
CsiI	ACCWGGT	1 cut(s)	542
Csp6I	GTAC	1 cut(s)	334
CviAII	CATG	5 cut(s)	181, 209, 340, 416, 505
CviJI	RGCY	8 cut(s)	21, 29, 52, 90, 157, 222, 373, 502
CviKI_1	RGCY	8 cut(s)	21, 29, 52, 90, 157, 222, 373, 502
CviQI	GTAC	1 cut(s)	334
DdeI	CTNAG	1 cut(s)	480
DpnI	GATC	3 cut(s)	510, 519, 524
DpnII	GATC	3 cut(s)	508, 517, 522
Eam1104I	CTCTTC	4 cut(s)	32, 204, 243, 320
EarI	CTCTTC	4 cut(s)	32, 204, 243, 320
Ecl136II	GAGCTC	1 cut(s)	502
Eco24I	GRGCYC	1 cut(s)	504
Eco47I	GGWCC	1 cut(s)	110
Eco53kI	GAGCTC	1 cut(s)	502
EcoICRI	GAGCTC	1 cut(s)	502
EcoRII	CCWGG	1 cut(s)	542
EcoT22I	ATGCAT	1 cut(s)	458
EcoT38I	GRGCYC	1 cut(s)	504
Esp3I	CGTCTC	1 cut(s)	137
FaeI	CATG	5 cut(s)	184, 212, 343, 419, 508
FaiI	YATR	7 cut(s)	63, 182, 210, 341, 417, 454, 506
FatI	CATG	5 cut(s)	180, 208, 339, 415, 504
FokI	GGATG	3 cut(s)	368, 392, 407
FriOI	GRGCYC	1 cut(s)	504
HaeIII	GGCC	1 cut(s)	52
HapII	CCGG	1 cut(s)	87
Hin1II	CATG	5 cut(s)	184, 212, 343, 419, 508
HinfI	GANTC	2 cut(s)	13, 97
HpaII	CCGG	1 cut(s)	87
Hpy166II	GTNNAC	1 cut(s)	195
Hpy188I	TCNGA	2 cut(s)	268, 522
Hpy188III	TCNNGA	2 cut(s)	209, 259
Hpy8I	GTNNAC	1 cut(s)	195
HpyAV	CCTTC	3 cut(s)	42, 286, 464
HpyCH4III	ACNGT	2 cut(s)	170, 431
HpyCH4IV	ACGT	1 cut(s)	255
HpyCH4V	TGCA	6 cut(s)	33, 152, 195, 297, 456, 528
HpyF10VI	GCNNNNNNNGC	1 cut(s)	288
HpyF3I	CTNAG	1 cut(s)	480
HpySE526I	ACGT	1 cut(s)	255
Hsp92II	CATG	5 cut(s)	184, 212, 343, 419, 508
Kzo9I	GATC	3 cut(s)	508, 517, 522
LpnPI	CCDG	6 cut(s)	43, 100, 161, 285, 349, 529
LweI	GCATC	3 cut(s)	284, 465, 493
MabI	ACCWGGT	1 cut(s)	542
MaeII	ACGT	1 cut(s)	255
MaeIII	GTNAC	2 cut(s)	164, 308
MalI	GATC	3 cut(s)	510, 519, 524
MboI	GATC	3 cut(s)	508, 517, 522
MboII	GAAGA	8 cut(s)	49, 92, 131, 191, 221, 260, 337, 527
MflI	RGATCY	2 cut(s)	508, 522
MhlI	GDGCHC	2 cut(s)	197, 504
MluCI	AATT	2 cut(s)	345, 423
MmeI	TCCRAC	2 cut(s)	284, 291
MnlI	CCTC	3 cut(s)	33, 243, 274
Mph1103I	ATGCAT	1 cut(s)	458
MseI	TTAA	2 cut(s)	422, 531
MslI	CAYNNNNRTG	2 cut(s)	432, 489
MspI	CCGG	1 cut(s)	87
MspR9I	CCNGG	2 cut(s)	87, 544
MvaI	CCWGG	1 cut(s)	544
MwoI	GCNNNNNNNGC	1 cut(s)	288
NciI	CCSGG	1 cut(s)	87
NdeII	GATC	3 cut(s)	508, 517, 522
NlaIII	CATG	5 cut(s)	184, 212, 343, 419, 508
NlaIV	GGNNCC	3 cut(s)	68, 84, 111
NsiI	ATGCAT	1 cut(s)	458
NspI	RCATGY	1 cut(s)	184
NspV	TTCGAA	1 cut(s)	538
PaeI	GCATGC	1 cut(s)	184
PagI	TCATGA	1 cut(s)	208
PfeI	GAWTC	2 cut(s)	13, 97
PshBI	ATTAAT	1 cut(s)	531
Psp124BI	GAGCTC	1 cut(s)	504
Psp6I	CCWGG	1 cut(s)	542
PspGI	CCWGG	1 cut(s)	542
PspN4I	GGNNCC	3 cut(s)	68, 84, 111
PspPI	GGNCC	1 cut(s)	110
PsuI	RGATCY	2 cut(s)	508, 522
RsaI	GTAC	1 cut(s)	335
RsaNI	GTAC	1 cut(s)	334
RseI	CAYNNNNRTG	2 cut(s)	432, 489
SacI	GAGCTC	1 cut(s)	504
SaqAI	TTAA	2 cut(s)	422, 531
Sau3AI	GATC	3 cut(s)	508, 517, 522
Sau96I	GGNCC	1 cut(s)	110
ScrFI	CCNGG	2 cut(s)	87, 544
SduI	GDGCHC	2 cut(s)	197, 504
SetI	ASST	6 cut(s)	159, 258, 266, 475, 504, 548
SexAI	ACCWGGT	1 cut(s)	542
SfaNI	GCATC	3 cut(s)	284, 465, 493
SfuI	TTCGAA	1 cut(s)	538
SinI	GGWCC	1 cut(s)	110
SmiMI	CAYNNNNRTG	2 cut(s)	432, 489
SmlI	CTYRAG	1 cut(s)	158
SmoI	CTYRAG	1 cut(s)	158
SphI	GCATGC	1 cut(s)	184
Sse9I	AATT	2 cut(s)	345, 423
SstI	GAGCTC	1 cut(s)	504
StyD4I	CCNGG	2 cut(s)	85, 542
TaaI	ACNGT	2 cut(s)	170, 431
TaiI	ACGT	1 cut(s)	258
TaqI	TCGA	3 cut(s)	5, 323, 538
TasI	AATT	2 cut(s)	345, 423
TfiI	GAWTC	2 cut(s)	13, 97
Tru1I	TTAA	2 cut(s)	422, 531
Tru9I	TTAA	2 cut(s)	422, 531
TscAI	CASTG	3 cut(s)	175, 304, 434
TspDTI	ATGAA	2 cut(s)	63, 197
TspGWI	ACGGA	1 cut(s)	107
TspRI	CASTG	3 cut(s)	175, 304, 434
VneI	GTGCAC	1 cut(s)	193
VpaK11BI	GGWCC	1 cut(s)	110
VspI	ATTAAT	1 cut(s)	531
XceI	RCATGY	1 cut(s)	184
XcmI	CCANNNNNNNNNTGG	1 cut(s)	413
Zsp2I	ATGCAT	1 cut(s)	458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.