Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010184.1

Orthogroup ID

OG0002257

Physical Location & Seq

Genomic Coordinates Forward (+)

23373 .. 24665

Gene Structure 1293 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010184.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

atgataattcccaaggatgattgttggactaagcctctagatgatagtgtcttggaaggcacaacgcatctgttacatggtatgattcactgtgatgggattgggcatttgctatgcattaatggacttaaagggggttctaagcatctttgtggcagagagatcatggatctttgggatcggatttgcacaaatcttagaaccaggaaaatcacagttgtagatttctcaaagaagcggtccatggaacttcgactgctccatgggattgcttatggacatccttggttcggtagatgggggtacaggttttgccatggaagctttggggttgcagaagaaacatatgaaagagcgcttgatattctcagctcaatagagcttgaaaagatcatccaagattttagtgacatggaagagtgtgaagagctgaagagagtaattcattgctacaaacattggagcgaatcaagcttggttacaatcaaagatcttctcaaatttatgctcactgtcaaggctggctgtcctgtgcaaagaaaagtcagaaaaccgaaaccgcctactgctactactctttcatccctccggatcaagtcccatctgtttgctgatgttatttctcacaaccccggcagacatcctgcaagaagacaaaagatggccgcagatgcaattgtgcatgtattgagagaaaatgaaaagaaaggctttgtgaatggtgagatggccaggcaagatgtaagagatgcagctctgttgcatagtagaagaagagggttgcctatcagagatataggtttgttggataatgtgctgagcaagctggacaatgtgattattgggaatcacattgtctgccgcaagctgcatgcgatgcctggaattaagactggaattaggaaatataccgttcatgatcttctcgatggaatcaagtccttggaacctgagaaagagttacttcttccatcacaagctctagttcctgatgtttacagtgatgttctttacttgtacaagaatgtactgttgggatatccagaatccaagttggtacaattggctactcaagtggtgttgaacaccaagtactttgtaaaggaatatcgattcggggataaggatgagcaagagcagtgccttgacattcctttgccaagtatgactgatagtgctaatcctgctgaatcaggaatctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000212 GO:0000226 GO:0000228 GO:0000280 GO:0000785 GO:0000790 GO:0000791 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005719 GO:0006323 GO:0006355 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007059 GO:0007060 GO:0007140 GO:0007275 GO:0007276 GO:0008134 GO:0008150 GO:0009555 GO:0009889 GO:0009987 GO:0010032 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0030154 GO:0030261 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0033613 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044703 GO:0045132 GO:0048229 GO:0048232 GO:0048235 GO:0048285 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0051321 GO:0051704 GO:0055046 GO:0060255 GO:0065007 GO:0070013 GO:0070192 GO:0071103 GO:0071840 GO:0080090 GO:0097159 GO:0098813 GO:0140013 GO:1901363 GO:1903046 GO:1903506 GO:1990188 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD

Protein Analysis

400

Amino Acids

45.45

Weight (kDa)

8.64

Isoelectric Point (pI)

36.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002257)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66170
fragaria_vesca	FvH4_1g29990 FvH4_1g29990 FvH4_1g29990 FvH4_6g02390
malus_domestica	MD09G1267100.v1.1 MD17G1254900.v1.1 MD17G1255100.v1.1 MD17G1260200.v1.1
prunus_persica	Prupe.3G164800_v2.0.a1
pyrus_communis	pycom12401g00150 pycom461g00270
rosa_chinensis	RchiOBHm_Chr3g0450161 RchiOBHm_Chr3g0492331
rosa_laevigata	RLG00000022781 RLG00000022872 RLG00000022874 RLG00000022875 RLG00000025750
rosa_multiflora	Rmu_co8200976.1_g000001 Rmu_sc0003156.1_g000026 Rmu_sc0010184.1_g000005 Rmu_sc0010184.1_g000015 Rmu_sc0020297.1_g000001
rosa_roxburghii	Rroxscaffold_3G00226630 Rroxscaffold_6G00392410 Rroxscaffold_6G00427920
rosa_rugosa	Rorug02G0625900 Rorug03G0253300
rosa_samantha	Rh2AG397300 Rh2CG383900 Rh3AG025300 Rh3AG303200 Rh3BG025900 Rh3BG339200 Rh3BG339300 Rh3CG024800 Rh3CG336400 Rh3DG025900 Rh3DG327500 Rh3DG338500
rosa_wichuraiana	Rw3G002030 Rw3G026750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	588
AciI	CCGC	4 cut(s)	238, 560, 666, 862
AclWI	GGATC	3 cut(s)	177, 186, 599
AcoI	YGGCCR	2 cut(s)	663, 729
AcsI	RAATTY	1 cut(s)	500
AcuI	CTGAAG	1 cut(s)	452
AfaI	GTAC	5 cut(s)	305, 1019, 1029, 1059, 1094
AfeI	AGCGCT	1 cut(s)	357
AfiI	CCNNNNNNNGG	1 cut(s)	290
AgsI	TTSAA	2 cut(s)	386, 1084
AjnI	CCWGG	3 cut(s)	203, 731, 880
AjuI	GAANNNNNNNTTGG	2 cut(s)	1016, 1048
AluBI	AGCT	9 cut(s)	324, 372, 382, 430, 474, 755, 826, 868, 980
AluI	AGCT	9 cut(s)	324, 372, 382, 430, 474, 755, 826, 868, 980
AlwI	GGATC	3 cut(s)	177, 186, 599
Aor13HI	TCCGGA	1 cut(s)	588
Aor51HI	AGCGCT	1 cut(s)	357
AoxI	GGCC	2 cut(s)	663, 729
ApeKI	GCWGC	2 cut(s)	752, 868
ApoI	RAATTY	1 cut(s)	500
ArsI	GACNNNNNNTTYG	2 cut(s)	224, 256
AseI	ATTAAT	1 cut(s)	120
AspLEI	GCGC	1 cut(s)	358
AspS9I	GGNCC	1 cut(s)	240
AsuC2I	CCSGG	1 cut(s)	633
AsuHPI	GGTGA	1 cut(s)	734
AvaII	GGWCC	1 cut(s)	240
BalI	TGGCCA	1 cut(s)	731
BbsI	GAAGAC	1 cut(s)	658
BbvI	GCAGC	2 cut(s)	764, 855
BccI	CCATC	7 cut(s)	89, 291, 609, 655, 721, 923, 979
BciT130I	CCWGG	3 cut(s)	205, 733, 882
BcnI	CCSGG	1 cut(s)	633
BfaI	CTAG	2 cut(s)	38, 983
BfoI	RGCGCY	1 cut(s)	359
BglII	AGATCT	1 cut(s)	490
BisI	GCNGC	4 cut(s)	666, 753, 862, 869
BlpI	GCTNAGC	1 cut(s)	818
BlsI	GCNGC	4 cut(s)	667, 754, 863, 870
BmcAI	AGTACT	1 cut(s)	1094
Bme1390I	CCNGG	4 cut(s)	205, 633, 733, 882
Bme18I	GGWCC	1 cut(s)	240
BmgT120I	GGNCC	1 cut(s)	240
BmiI	GGNNCC	1 cut(s)	948
BmrFI	CCNGG	4 cut(s)	205, 633, 733, 882
BmsI	GCATC	5 cut(s)	76, 154, 661, 739, 867
BpiI	GAAGAC	1 cut(s)	658
Bpu1102I	GCTNAGC	1 cut(s)	818
BpuEI	CTTGAG	1 cut(s)	1056
BpuMI	CCSGG	1 cut(s)	633
Bsa29I	ATCGAT	1 cut(s)	1111
BsaJI	CCNNGG	7 cut(s)	12, 243, 262, 284, 316, 631, 942
BsaWI	WCCGGW	1 cut(s)	588
Bsc4I	CCNNNNNNNGG	1 cut(s)	290
Bse1I	ACTGG	1 cut(s)	898
Bse3DI	GCAATG	1 cut(s)	445
BseAI	TCCGGA	1 cut(s)	588
BseBI	CCWGG	3 cut(s)	205, 733, 882
BseCI	ATCGAT	1 cut(s)	1111
BseDI	CCNNGG	7 cut(s)	12, 243, 262, 284, 316, 631, 942
BseGI	GGATG	6 cut(s)	22, 280, 393, 581, 640, 1132
BseLI	CCNNNNNNNGG	1 cut(s)	290
BseMI	GCAATG	1 cut(s)	445
BseMII	CTCAG	3 cut(s)	382, 809, 942
BseNI	ACTGG	1 cut(s)	898
BseXI	GCAGC	2 cut(s)	764, 855
BshFI	GGCC	2 cut(s)	665, 731
BshVI	ATCGAT	1 cut(s)	1111
BsiSI	CCGG	2 cut(s)	589, 633
BslFI	GGGAC	1 cut(s)	583
BslI	CCNNNNNNNGG	1 cut(s)	290
BsmFI	GGGAC	1 cut(s)	583
BsnI	GGCC	2 cut(s)	665, 731
Bsp13I	TCCGGA	1 cut(s)	588
Bsp1407I	TGTACA	1 cut(s)	1017
Bsp143I	GATC	7 cut(s)	162, 169, 178, 390, 490, 591, 919
Bsp1720I	GCTNAGC	1 cut(s)	818
Bsp19I	CCATGG	3 cut(s)	243, 262, 316
BspACI	CCGC	4 cut(s)	238, 560, 666, 862
BspANI	GGCC	2 cut(s)	665, 731
BspCNI	CTCAG	3 cut(s)	381, 810, 943
BspDI	ATCGAT	1 cut(s)	1111
BspEI	TCCGGA	1 cut(s)	588
BspHI	TCATGA	1 cut(s)	916
BspLI	GGNNCC	1 cut(s)	948
BspPI	GGATC	3 cut(s)	177, 186, 599
BspQI	GCTCTTC	1 cut(s)	420
BsrDI	GCAATG	1 cut(s)	445
BsrGI	TGTACA	1 cut(s)	1017
BsrI	ACTGG	1 cut(s)	898
BssECI	CCNNGG	7 cut(s)	12, 243, 262, 284, 316, 631, 942
BssMI	GATC	7 cut(s)	162, 169, 178, 390, 490, 591, 919
BssT1I	CCWWGG	6 cut(s)	12, 243, 262, 284, 316, 942
Bst2UI	CCWGG	3 cut(s)	205, 733, 882
Bst4CI	ACNGT	6 cut(s)	92, 217, 514, 913, 1001, 1032
Bst6I	CTCTTC	4 cut(s)	411, 420, 428, 769
BstAPI	GCANNNNNTGC	1 cut(s)	877
BstAUI	TGTACA	1 cut(s)	1017
BstC8I	GCNNGC	4 cut(s)	523, 824, 866, 873
BstDEI	CTNAG	6 cut(s)	30, 141, 197, 368, 818, 951
BstDSI	CCRYGG	3 cut(s)	243, 262, 316
BstF5I	GGATG	6 cut(s)	22, 280, 393, 581, 640, 1132
BstH2I	RGCGCY	1 cut(s)	359
BstHHI	GCGC	1 cut(s)	358
BstKTI	GATC	7 cut(s)	165, 172, 181, 393, 493, 594, 922
BstMBI	GATC	7 cut(s)	162, 169, 178, 390, 490, 591, 919
BstMWI	GCNNNNNNNGC	6 cut(s)	321, 471, 671, 823, 877, 1184
BstNI	CCWGG	3 cut(s)	205, 733, 882
BstNSI	RCATGY	2 cut(s)	686, 875
BstSCI	CCNGG	4 cut(s)	203, 631, 731, 880
BstV1I	GCAGC	2 cut(s)	764, 855
BstV2I	GAAGAC	1 cut(s)	658
BstX2I	RGATCY	2 cut(s)	169, 490
BstYI	RGATCY	2 cut(s)	169, 490
Bsu15I	ATCGAT	1 cut(s)	1111
BsuRI	GGCC	2 cut(s)	665, 731
BsuTUI	ATCGAT	1 cut(s)	1111
BtgI	CCRYGG	3 cut(s)	243, 262, 316
BtgZI	GCGATG	1 cut(s)	890
BtsCI	GGATG	6 cut(s)	22, 280, 393, 581, 640, 1132
BtsI	GCAGTG	1 cut(s)	1145
BtsIMutI	CAGTG	4 cut(s)	88, 510, 1006, 1145
Cac8I	GCNNGC	4 cut(s)	523, 824, 866, 873
CciI	TCATGA	1 cut(s)	916
CfoI	GCGC	1 cut(s)	358
Cfr13I	GGNCC	1 cut(s)	240
ClaI	ATCGAT	1 cut(s)	1111
Csp6I	GTAC	5 cut(s)	304, 1018, 1028, 1058, 1093
CviAII	CATG	9 cut(s)	77, 166, 244, 263, 317, 412, 683, 872, 917
CviQI	GTAC	5 cut(s)	304, 1018, 1028, 1058, 1093
DdeI	CTNAG	6 cut(s)	30, 141, 197, 368, 818, 951
DpnI	GATC	7 cut(s)	164, 171, 180, 392, 492, 593, 921
DpnII	GATC	7 cut(s)	162, 169, 178, 390, 490, 591, 919
EaeI	YGGCCR	2 cut(s)	663, 729
Eam1104I	CTCTTC	4 cut(s)	411, 420, 428, 769
EarI	CTCTTC	4 cut(s)	411, 420, 428, 769
Eco130I	CCWWGG	6 cut(s)	12, 243, 262, 284, 316, 942
Eco32I	GATATC	1 cut(s)	1040
Eco47I	GGWCC	1 cut(s)	240
Eco47III	AGCGCT	1 cut(s)	357
Eco57I	CTGAAG	1 cut(s)	452
EcoRII	CCWGG	3 cut(s)	203, 731, 880
EcoRV	GATATC	1 cut(s)	1040
EcoT14I	CCWWGG	6 cut(s)	12, 243, 262, 284, 316, 942
EcoT22I	ATGCAT	1 cut(s)	119
ErhI	CCWWGG	6 cut(s)	12, 243, 262, 284, 316, 942
FaeI	CATG	9 cut(s)	80, 169, 247, 266, 320, 415, 686, 875, 920
FalI	AAGNNNNNCTT	4 cut(s)	695, 727, 948, 980
FaqI	GGGAC	1 cut(s)	583
FatI	CATG	9 cut(s)	76, 165, 243, 262, 316, 411, 682, 871, 916
FauNDI	CATATG	1 cut(s)	346
Fnu4HI	GCNGC	4 cut(s)	666, 753, 862, 869
FokI	GGATG	6 cut(s)	29, 267, 380, 568, 627, 1139
Fsp4HI	GCNGC	4 cut(s)	666, 753, 862, 869
FspBI	CTAG	2 cut(s)	38, 983
GlaI	GCGC	1 cut(s)	357
GluI	GCNGC	4 cut(s)	666, 753, 862, 869
HaeII	RGCGCY	1 cut(s)	359
HaeIII	GGCC	2 cut(s)	665, 731
HapII	CCGG	2 cut(s)	589, 633
HhaI	GCGC	1 cut(s)	358
Hin1II	CATG	9 cut(s)	80, 169, 247, 266, 320, 415, 686, 875, 920
Hin6I	GCGC	1 cut(s)	356
HinP1I	GCGC	1 cut(s)	356
HindIII	AAGCTT	2 cut(s)	322, 472
HinfI	GANTC	8 cut(s)	85, 467, 847, 933, 1046, 1113, 1190, 1197
HpaII	CCGG	2 cut(s)	589, 633
HphI	GGTGA	1 cut(s)	734
Hpy166II	GTNNAC	1 cut(s)	997
Hpy188I	TCNGA	3 cut(s)	183, 548, 791
Hpy188III	TCNNGA	7 cut(s)	38, 589, 917, 926, 989, 1043, 1194
Hpy8I	GTNNAC	1 cut(s)	997
HpyAV	CCTTC	1 cut(s)	50
HpyCH4III	ACNGT	6 cut(s)	92, 217, 514, 913, 1001, 1032
HpyF10VI	GCNNNNNNNGC	6 cut(s)	321, 471, 671, 823, 877, 1184
HpyF3I	CTNAG	6 cut(s)	30, 141, 197, 368, 818, 951
Hsp92II	CATG	9 cut(s)	80, 169, 247, 266, 320, 415, 686, 875, 920
HspAI	GCGC	1 cut(s)	356
Kpn2I	TCCGGA	1 cut(s)	588
Kzo9I	GATC	7 cut(s)	162, 169, 178, 390, 490, 591, 919
LguI	GCTCTTC	1 cut(s)	420
LmnI	GCTCC	2 cut(s)	264, 462
Lsp1109I	GCAGC	2 cut(s)	764, 855
LweI	GCATC	5 cut(s)	76, 154, 661, 739, 867
MaeI	CTAG	2 cut(s)	38, 983
MaeIII	GTNAC	4 cut(s)	72, 407, 478, 960
MalI	GATC	7 cut(s)	164, 171, 180, 392, 492, 593, 921
MboI	GATC	7 cut(s)	162, 169, 178, 390, 490, 591, 919
MfeI	CAATTG	2 cut(s)	675, 1061
MflI	RGATCY	2 cut(s)	169, 490
MlsI	TGGCCA	1 cut(s)	731
MluCI	AATT	7 cut(s)	6, 441, 500, 675, 885, 897, 1061
MluNI	TGGCCA	1 cut(s)	731
MmeI	TCCRAC	2 cut(s)	5, 786
MnlI	CCTC	3 cut(s)	45, 596, 770
Mox20I	TGGCCA	1 cut(s)	731
Mph1103I	ATGCAT	1 cut(s)	119
MroI	TCCGGA	1 cut(s)	588
MscI	TGGCCA	1 cut(s)	731
MseI	TTAA	3 cut(s)	120, 129, 888
MslI	CAYNNNNRTG	2 cut(s)	93, 150
Msp20I	TGGCCA	1 cut(s)	731
MspI	CCGG	2 cut(s)	589, 633
MspR9I	CCNGG	4 cut(s)	205, 633, 733, 882
MunI	CAATTG	2 cut(s)	675, 1061
MvaI	CCWGG	3 cut(s)	205, 733, 882
MwoI	GCNNNNNNNGC	6 cut(s)	321, 471, 671, 823, 877, 1184
NciI	CCSGG	1 cut(s)	633
NcoI	CCATGG	3 cut(s)	243, 262, 316
NdeI	CATATG	1 cut(s)	346
NdeII	GATC	7 cut(s)	162, 169, 178, 390, 490, 591, 919
NlaIII	CATG	9 cut(s)	80, 169, 247, 266, 320, 415, 686, 875, 920
NlaIV	GGNNCC	1 cut(s)	948
NmuCI	GTSAC	1 cut(s)	407
NsiI	ATGCAT	1 cut(s)	119
NspI	RCATGY	2 cut(s)	686, 875
PaeI	GCATGC	1 cut(s)	875
PagI	TCATGA	1 cut(s)	916
PciSI	GCTCTTC	1 cut(s)	420
PfeI	GAWTC	8 cut(s)	85, 467, 847, 933, 1046, 1113, 1190, 1197
PkrI	GCNGC	4 cut(s)	667, 754, 863, 870
PshBI	ATTAAT	1 cut(s)	120
Psp6I	CCWGG	3 cut(s)	203, 731, 880
PspGI	CCWGG	3 cut(s)	203, 731, 880
PspN4I	GGNNCC	1 cut(s)	948
PspPI	GGNCC	1 cut(s)	240
PsrI	GAACNNNNNNTAC	2 cut(s)	1076, 1108
PsuI	RGATCY	2 cut(s)	169, 490
RsaI	GTAC	5 cut(s)	305, 1019, 1029, 1059, 1094
RsaNI	GTAC	5 cut(s)	304, 1018, 1028, 1058, 1093
RseI	CAYNNNNRTG	2 cut(s)	93, 150
SapI	GCTCTTC	1 cut(s)	420
SaqAI	TTAA	3 cut(s)	120, 129, 888
SatI	GCNGC	4 cut(s)	666, 753, 862, 869
Sau3AI	GATC	7 cut(s)	162, 169, 178, 390, 490, 591, 919
Sau96I	GGNCC	1 cut(s)	240
ScaI	AGTACT	1 cut(s)	1094
ScrFI	CCNGG	4 cut(s)	205, 633, 733, 882
SfaNI	GCATC	5 cut(s)	76, 154, 661, 739, 867
SinI	GGWCC	1 cut(s)	240
SmiMI	CAYNNNNRTG	2 cut(s)	93, 150
SmlI	CTYRAG	1 cut(s)	1071
SmoI	CTYRAG	1 cut(s)	1071
SphI	GCATGC	1 cut(s)	875
Sse9I	AATT	7 cut(s)	6, 441, 500, 675, 885, 897, 1061
SsiI	CCGC	4 cut(s)	238, 560, 666, 862
SspMI	CTAG	2 cut(s)	38, 983
StyD4I	CCNGG	4 cut(s)	203, 631, 731, 880
StyI	CCWWGG	6 cut(s)	12, 243, 262, 284, 316, 942
TaaI	ACNGT	6 cut(s)	92, 217, 514, 913, 1001, 1032
TaqI	TCGA	3 cut(s)	253, 927, 1111
TasI	AATT	7 cut(s)	6, 441, 500, 675, 885, 897, 1061
TatI	WGTACW	3 cut(s)	1017, 1027, 1092
TauI	GCSGC	2 cut(s)	668, 864
TfiI	GAWTC	8 cut(s)	85, 467, 847, 933, 1046, 1113, 1190, 1197
Tru1I	TTAA	3 cut(s)	120, 129, 888
Tru9I	TTAA	3 cut(s)	120, 129, 888
TscAI	CASTG	4 cut(s)	95, 517, 1006, 1145
TseFI	GTSAC	1 cut(s)	407
TseI	GCWGC	2 cut(s)	752, 868
Tsp45I	GTSAC	1 cut(s)	407
TspDTI	ATGAA	5 cut(s)	363, 434, 570, 714, 905
TspRI	CASTG	4 cut(s)	95, 517, 1006, 1145
VpaK11BI	GGWCC	1 cut(s)	240
VspI	ATTAAT	1 cut(s)	120
XapI	RAATTY	1 cut(s)	500
XbaI	TCTAGA	1 cut(s)	37
XceI	RCATGY	2 cut(s)	686, 875
XcmI	CCANNNNNNNNNTGG	1 cut(s)	323
XspI	CTAG	2 cut(s)	38, 983
ZrmI	AGTACT	1 cut(s)	1094
Zsp2I	ATGCAT	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.