Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0002257

Physical Location & Seq

Genomic Coordinates Reverse (-)

1699996 .. 1702683

Gene Structure 2688 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG025900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1572 bp

ATGTCGACCCAAATGGACCAAACCCCAAACCCCAATTCCATCCCAACCAAGAAACGAAGCACCAGGAAGAGGCTCCGAGCTTGCAGCAACCACAGCTATGAGCTCACCACGTTTTGCGAACCGGGTCGCCCGATTAGTCCAACCGGTCCATTCCGGGACAACATTTTCATGTTTCTTCAACAATGTGCGGAGCTCACCGACTTCACAGTTCAAGGCATGAACGTTTGGTTCACTCTTCTTCGCAGCCGTGAGTGTTTGGTTCCTCTTTTTACTATTGAAGAGAACGTGAACACCTCTAAAACCGAGTTCTGTGATCACTGCTTGTCAACTGATTGGACTAACCATTTTGTGTCGAAGAGAAAGTACCACATGATAATTCCCAAGGATGATTGTTGGACTAAGCCTCTAGATGATAGTGTCCTGGAAGGCACAACGCATCTGTTACATGGTATGATTCACTGTGATGGGATTGGGCATTTGCTATGCATTAATGGACTTAAAGGGGGTTCTAAGCATCTTTGTGGCAGAGAGATCATGGATCTTTGGGATCGGATTTGCACAAATCTTAGAACCAGGAAAATCACAGTTGAAGATTTCTCAAAGAAGCGGTCCATGGAACTTCGACTGCTCCATGGGATTGCTTATGGACATCCTTGGTTCGGTAGATGGGGGTACAGGTTTTGCCATGGAAGCTTTGGGGTTGCAGAAGAAACATATGAAAGAGCGCTTGATATTCTCAGCTCAATAGAGCTTGAAAAGATCATCCAAGATTTTAGTGACATGGAAGAGTGTGAAGAGCTGAAGAGAGTAATTCATTGCTACAAACATTGGAGCGAATCAAGCTTGGTTACAATCAAAGATCTTCTCAAATTTATGCTCACTGTCAAGGCTGGCTGTCCTGTGCAAAGAAAAGTCAGAAAACCGAAACCGCCTACTACTACTACTCTTTCATCCCTCCGGATCAAGTCCAAGCTGTTTACTGATGTTATTTCTCACAACCCCGGCAGACATCCTGCAAGAAGACTAAAGATGGCTGCAGATGCGATTGTGCATGTATTGAGAGAAAATGAAAAGAAAGGCTTTGTGAATGGTGAGATGGCCAGGCAAGATGTAAGAGATGCAGCTCTGTTGCATAGTAGAAGAAGAGGGTTGCCTATCAGAGATATAGGTTTGTTGGATAATGTACTGAGCAAGCTGGACAATGTGATTATTGGGAATCACATTGTCTGCCGCAAGCTGCATGCGATGCCTGGAATTAAGACTGGAATTAGGAAATATACCGTTCATGATCTTCTCGATGGAATCAAGTCCTTGGAACCTGAGAGAGAGTTACTTCTTCCATCACAAGCTCTAGTTCCTGATGTTTACAGTGATGTTCTTTACTTGTACAAGAATGTACTGTTGGGATATCCAGAATCCAAGTTGGTACAATTGGCTACTCAAGTGGTGTTGAACACCAAGTACTTTGTAAAGGAATATCGATTCGGGGATAAGGATGAGCAAGAGCAGTGCCTTGACATTCCTTTGCCAAGTATGACTGATAGTGCTAATCCTGCCGAGTCAGGAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000212 GO:0000226 GO:0000228 GO:0000280 GO:0000785 GO:0000790 GO:0000791 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005719 GO:0006323 GO:0006355 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007059 GO:0007060 GO:0007140 GO:0007275 GO:0007276 GO:0008134 GO:0008150 GO:0009555 GO:0009889 GO:0009987 GO:0010032 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0030154 GO:0030261 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0033613 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044703 GO:0045132 GO:0048229 GO:0048232 GO:0048235 GO:0048285 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0051321 GO:0051704 GO:0055046 GO:0060255 GO:0065007 GO:0070013 GO:0070192 GO:0071103 GO:0071840 GO:0080090 GO:0097159 GO:0098813 GO:0140013 GO:1901363 GO:1903046 GO:1903506 GO:1990188 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD

Protein Analysis

523

Amino Acids

59.91

Weight (kDa)

8.7

Isoelectric Point (pI)

43.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_plant_repro	PF25874	336 - 415	5.9e-14	Winged helix-turn-helix domain in plant reproductive proteins

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002257)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66170
fragaria_vesca	FvH4_1g29990 FvH4_1g29990 FvH4_1g29990 FvH4_6g02390
malus_domestica	MD09G1267100.v1.1 MD17G1254900.v1.1 MD17G1255100.v1.1 MD17G1260200.v1.1
prunus_persica	Prupe.3G164800_v2.0.a1
pyrus_communis	pycom12401g00150 pycom461g00270
rosa_chinensis	RchiOBHm_Chr3g0450161 RchiOBHm_Chr3g0492331
rosa_laevigata	RLG00000022781 RLG00000022872 RLG00000022874 RLG00000022875 RLG00000025750
rosa_multiflora	Rmu_co8200976.1_g000001 Rmu_sc0003156.1_g000026 Rmu_sc0010184.1_g000005 Rmu_sc0010184.1_g000015 Rmu_sc0020297.1_g000001
rosa_roxburghii	Rroxscaffold_3G00226630 Rroxscaffold_6G00392410 Rroxscaffold_6G00427920
rosa_rugosa	Rorug02G0625900 Rorug03G0253300
rosa_samantha	Rh2AG397300 Rh2CG383900 Rh3AG025300 Rh3AG303200 Rh3BG025900 Rh3BG339200 Rh3BG339300 Rh3CG024800 Rh3CG336400 Rh3DG025900 Rh3DG327500 Rh3DG338500
rosa_wichuraiana	Rw3G002030 Rw3G026750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	5
AccIII	TCCGGA	1 cut(s)	957
AciI	CCGC	4 cut(s)	188, 607, 929, 1231
AclI	AACGTT	1 cut(s)	222
AclWI	GGATC	3 cut(s)	546, 555, 968
AcoI	YGGCCR	1 cut(s)	1098
AcsI	RAATTY	1 cut(s)	869
AcuI	CTGAAG	1 cut(s)	821
AfaI	GTAC	7 cut(s)	365, 674, 1185, 1388, 1398, 1428, 1463
AfeI	AGCGCT	1 cut(s)	726
AfiI	CCNNNNNNNGG	2 cut(s)	69, 659
AgeI	ACCGGT	1 cut(s)	143
AgsI	TTSAA	6 cut(s)	179, 212, 278, 590, 755, 1453
AjnI	CCWGG	5 cut(s)	62, 420, 572, 1100, 1249
AjuI	GAANNNNNNNTTGG	4 cut(s)	19, 51, 1385, 1417
Alw21I	GWGCWC	2 cut(s)	105, 195
AlwI	GGATC	3 cut(s)	546, 555, 968
Aor13HI	TCCGGA	1 cut(s)	957
Aor51HI	AGCGCT	1 cut(s)	726
AoxI	GGCC	1 cut(s)	1098
ApeKI	GCWGC	5 cut(s)	84, 243, 1034, 1121, 1237
ApoI	RAATTY	1 cut(s)	869
ArsI	GACNNNNNNTTYG	2 cut(s)	593, 625
AseI	ATTAAT	1 cut(s)	489
AsiGI	ACCGGT	1 cut(s)	143
AspLEI	GCGC	1 cut(s)	727
AspS9I	GGNCC	3 cut(s)	16, 146, 609
AsuC2I	CCSGG	3 cut(s)	123, 155, 1002
AsuHPI	GGTGA	3 cut(s)	97, 187, 1103
AvaII	GGWCC	3 cut(s)	16, 146, 609
BalI	TGGCCA	1 cut(s)	1100
BanII	GRGCYC	2 cut(s)	105, 195
BarI	GAAGNNNNNNTAC	2 cut(s)	347, 379
BbsI	GAAGAC	1 cut(s)	1027
Bbv12I	GWGCWC	2 cut(s)	105, 195
BbvI	GCAGC	5 cut(s)	96, 255, 1021, 1133, 1224
BccI	CCATC	7 cut(s)	47, 458, 660, 1024, 1090, 1292, 1348
BceAI	ACGGC	1 cut(s)	231
BciT130I	CCWGG	5 cut(s)	64, 422, 574, 1102, 1251
BclI	TGATCA	1 cut(s)	313
BcnI	CCSGG	3 cut(s)	123, 155, 1002
BfaI	CTAG	2 cut(s)	407, 1352
BfmI	CTRYAG	1 cut(s)	1035
BfoI	RGCGCY	1 cut(s)	728
BglII	AGATCT	1 cut(s)	859
BisI	GCNGC	6 cut(s)	85, 244, 1035, 1122, 1231, 1238
BlsI	GCNGC	6 cut(s)	86, 245, 1036, 1123, 1232, 1239
BmcAI	AGTACT	1 cut(s)	1463
Bme1390I	CCNGG	8 cut(s)	64, 123, 155, 422, 574, 1002, 1102, 1251
Bme18I	GGWCC	3 cut(s)	16, 146, 609
BmgT120I	GGNCC	3 cut(s)	16, 146, 609
BmiI	GGNNCC	3 cut(s)	74, 261, 1317
BmrFI	CCNGG	8 cut(s)	64, 123, 155, 422, 574, 1002, 1102, 1251
BmsI	GCATC	5 cut(s)	445, 523, 1030, 1108, 1236
BpiI	GAAGAC	1 cut(s)	1027
BpuEI	CTTGAG	1 cut(s)	1425
BpuMI	CCSGG	3 cut(s)	123, 155, 1002
Bsa29I	ATCGAT	1 cut(s)	1480
BsaJI	CCNNGG	7 cut(s)	381, 612, 631, 653, 685, 1000, 1311
BsaWI	WCCGGW	2 cut(s)	143, 957
Bsc4I	CCNNNNNNNGG	2 cut(s)	69, 659
Bse118I	RCCGGY	1 cut(s)	143
Bse1I	ACTGG	1 cut(s)	1267
Bse3DI	GCAATG	1 cut(s)	814
BseAI	TCCGGA	1 cut(s)	957
BseBI	CCWGG	5 cut(s)	64, 422, 574, 1102, 1251
BseCI	ATCGAT	1 cut(s)	1480
BseDI	CCNNGG	7 cut(s)	381, 612, 631, 653, 685, 1000, 1311
BseGI	GGATG	7 cut(s)	39, 391, 649, 762, 950, 1009, 1501
BseLI	CCNNNNNNNGG	2 cut(s)	69, 659
BseMI	GCAATG	1 cut(s)	814
BseMII	CTCAG	3 cut(s)	751, 1178, 1311
BseNI	ACTGG	1 cut(s)	1267
BseXI	GCAGC	5 cut(s)	96, 255, 1021, 1133, 1224
BshFI	GGCC	1 cut(s)	1100
BshTI	ACCGGT	1 cut(s)	143
BshVI	ATCGAT	1 cut(s)	1480
BsiHKAI	GWGCWC	2 cut(s)	105, 195
BsiSI	CCGG	5 cut(s)	122, 144, 154, 958, 1002
BslFI	GGGAC	1 cut(s)	170
BslI	CCNNNNNNNGG	2 cut(s)	69, 659
BsmFI	GGGAC	1 cut(s)	170
BsnI	GGCC	1 cut(s)	1100
Bsp1286I	GDGCHC	2 cut(s)	105, 195
Bsp13I	TCCGGA	1 cut(s)	957
Bsp1407I	TGTACA	1 cut(s)	1386
Bsp143I	GATC	8 cut(s)	313, 531, 538, 547, 759, 859, 960, 1288
Bsp19I	CCATGG	3 cut(s)	612, 631, 685
BspACI	CCGC	4 cut(s)	188, 607, 929, 1231
BspANI	GGCC	1 cut(s)	1100
BspCNI	CTCAG	3 cut(s)	750, 1179, 1312
BspDI	ATCGAT	1 cut(s)	1480
BspEI	TCCGGA	1 cut(s)	957
BspHI	TCATGA	1 cut(s)	1285
BspLI	GGNNCC	3 cut(s)	74, 261, 1317
BspMAI	CTGCAG	1 cut(s)	1039
BspPI	GGATC	3 cut(s)	546, 555, 968
BspQI	GCTCTTC	1 cut(s)	789
BsrDI	GCAATG	1 cut(s)	814
BsrFI	RCCGGY	1 cut(s)	143
BsrGI	TGTACA	1 cut(s)	1386
BsrI	ACTGG	1 cut(s)	1267
BssAI	RCCGGY	1 cut(s)	143
BssECI	CCNNGG	7 cut(s)	381, 612, 631, 653, 685, 1000, 1311
BssMI	GATC	8 cut(s)	313, 531, 538, 547, 759, 859, 960, 1288
BssT1I	CCWWGG	6 cut(s)	381, 612, 631, 653, 685, 1311
Bst2UI	CCWGG	5 cut(s)	64, 422, 574, 1102, 1251
Bst4CI	ACNGT	7 cut(s)	208, 461, 586, 883, 1282, 1370, 1401
Bst6I	CTCTTC	8 cut(s)	62, 240, 273, 350, 780, 789, 797, 1138
BstAPI	GCANNNNNTGC	1 cut(s)	1246
BstAUI	TGTACA	1 cut(s)	1386
BstC8I	GCNNGC	5 cut(s)	82, 892, 1193, 1235, 1242
BstDEI	CTNAG	6 cut(s)	399, 510, 566, 737, 1187, 1320
BstDSI	CCRYGG	3 cut(s)	612, 631, 685
BstF5I	GGATG	7 cut(s)	39, 391, 649, 762, 950, 1009, 1501
BstH2I	RGCGCY	1 cut(s)	728
BstHHI	GCGC	1 cut(s)	727
BstKTI	GATC	8 cut(s)	316, 534, 541, 550, 762, 862, 963, 1291
BstMBI	GATC	8 cut(s)	313, 531, 538, 547, 759, 859, 960, 1288
BstMWI	GCNNNNNNNGC	6 cut(s)	93, 690, 840, 1040, 1246, 1553
BstNI	CCWGG	5 cut(s)	64, 422, 574, 1102, 1251
BstNSI	RCATGY	2 cut(s)	1055, 1244
BstSCI	CCNGG	8 cut(s)	62, 121, 153, 420, 572, 1000, 1100, 1249
BstSFI	CTRYAG	1 cut(s)	1035
BstV1I	GCAGC	5 cut(s)	96, 255, 1021, 1133, 1224
BstV2I	GAAGAC	1 cut(s)	1027
BstX2I	RGATCY	2 cut(s)	538, 859
BstYI	RGATCY	2 cut(s)	538, 859
Bsu15I	ATCGAT	1 cut(s)	1480
BsuRI	GGCC	1 cut(s)	1100
BsuTUI	ATCGAT	1 cut(s)	1480
BtgI	CCRYGG	3 cut(s)	612, 631, 685
BtgZI	GCGATG	1 cut(s)	1259
BtsCI	GGATG	7 cut(s)	39, 391, 649, 762, 950, 1009, 1501
BtsI	GCAGTG	2 cut(s)	316, 1514
BtsIMutI	CAGTG	5 cut(s)	316, 457, 879, 1375, 1514
Cac8I	GCNNGC	5 cut(s)	82, 892, 1193, 1235, 1242
CciI	TCATGA	1 cut(s)	1285
CfoI	GCGC	1 cut(s)	727
Cfr10I	RCCGGY	1 cut(s)	143
Cfr13I	GGNCC	3 cut(s)	16, 146, 609
ClaI	ATCGAT	1 cut(s)	1480
Csp6I	GTAC	7 cut(s)	364, 673, 1184, 1387, 1397, 1427, 1462
CspAI	ACCGGT	1 cut(s)	143
CviQI	GTAC	7 cut(s)	364, 673, 1184, 1387, 1397, 1427, 1462
DdeI	CTNAG	6 cut(s)	399, 510, 566, 737, 1187, 1320
DpnI	GATC	8 cut(s)	315, 533, 540, 549, 761, 861, 962, 1290
DpnII	GATC	8 cut(s)	313, 531, 538, 547, 759, 859, 960, 1288
EaeI	YGGCCR	1 cut(s)	1098
Eam1104I	CTCTTC	8 cut(s)	62, 240, 273, 350, 780, 789, 797, 1138
EarI	CTCTTC	8 cut(s)	62, 240, 273, 350, 780, 789, 797, 1138
Ecl136II	GAGCTC	2 cut(s)	103, 193
Eco130I	CCWWGG	6 cut(s)	381, 612, 631, 653, 685, 1311
Eco24I	GRGCYC	2 cut(s)	105, 195
Eco32I	GATATC	1 cut(s)	1409
Eco47I	GGWCC	3 cut(s)	16, 146, 609
Eco47III	AGCGCT	1 cut(s)	726
Eco53kI	GAGCTC	2 cut(s)	103, 193
Eco57I	CTGAAG	1 cut(s)	821
EcoICRI	GAGCTC	2 cut(s)	103, 193
EcoRII	CCWGG	5 cut(s)	62, 420, 572, 1100, 1249
EcoRV	GATATC	1 cut(s)	1409
EcoT14I	CCWWGG	6 cut(s)	381, 612, 631, 653, 685, 1311
EcoT22I	ATGCAT	1 cut(s)	488
EcoT38I	GRGCYC	2 cut(s)	105, 195
ErhI	CCWWGG	6 cut(s)	381, 612, 631, 653, 685, 1311
FalI	AAGNNNNNCTT	2 cut(s)	1064, 1096
FaqI	GGGAC	1 cut(s)	170
FauNDI	CATATG	1 cut(s)	715
FbaI	TGATCA	1 cut(s)	313
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	6 cut(s)	85, 244, 1035, 1122, 1231, 1238
FokI	GGATG	7 cut(s)	26, 398, 636, 749, 937, 996, 1508
FriOI	GRGCYC	2 cut(s)	105, 195
Fsp4HI	GCNGC	6 cut(s)	85, 244, 1035, 1122, 1231, 1238
FspBI	CTAG	2 cut(s)	407, 1352
GlaI	GCGC	1 cut(s)	726
GluI	GCNGC	6 cut(s)	85, 244, 1035, 1122, 1231, 1238
HaeII	RGCGCY	1 cut(s)	728
HaeIII	GGCC	1 cut(s)	1100
HapII	CCGG	5 cut(s)	122, 144, 154, 958, 1002
HhaI	GCGC	1 cut(s)	727
Hin6I	GCGC	1 cut(s)	725
HinP1I	GCGC	1 cut(s)	725
HincII	GTYRAC	2 cut(s)	6, 327
HindII	GTYRAC	2 cut(s)	6, 327
HindIII	AAGCTT	2 cut(s)	691, 841
HinfI	GANTC	8 cut(s)	454, 836, 1216, 1302, 1415, 1482, 1559, 1566
HpaII	CCGG	5 cut(s)	122, 144, 154, 958, 1002
HphI	GGTGA	3 cut(s)	97, 187, 1103
Hpy166II	GTNNAC	6 cut(s)	6, 231, 289, 327, 978, 1366
Hpy188I	TCNGA	4 cut(s)	77, 552, 917, 1160
Hpy188III	TCNNGA	7 cut(s)	407, 958, 1286, 1295, 1358, 1412, 1563
Hpy8I	GTNNAC	6 cut(s)	6, 231, 289, 327, 978, 1366
HpyAV	CCTTC	1 cut(s)	419
HpyCH4III	ACNGT	7 cut(s)	208, 461, 586, 883, 1282, 1370, 1401
HpyCH4IV	ACGT	3 cut(s)	110, 222, 285
HpyF10VI	GCNNNNNNNGC	6 cut(s)	93, 690, 840, 1040, 1246, 1553
HpyF3I	CTNAG	6 cut(s)	399, 510, 566, 737, 1187, 1320
HpySE526I	ACGT	3 cut(s)	110, 222, 285
HspAI	GCGC	1 cut(s)	725
Kpn2I	TCCGGA	1 cut(s)	957
Ksp22I	TGATCA	1 cut(s)	313
Kzo9I	GATC	8 cut(s)	313, 531, 538, 547, 759, 859, 960, 1288
LguI	GCTCTTC	1 cut(s)	789
LmnI	GCTCC	4 cut(s)	78, 190, 633, 831
Lsp1109I	GCAGC	5 cut(s)	96, 255, 1021, 1133, 1224
LweI	GCATC	5 cut(s)	445, 523, 1030, 1108, 1236
MaeI	CTAG	2 cut(s)	407, 1352
MaeII	ACGT	3 cut(s)	110, 222, 285
MaeIII	GTNAC	4 cut(s)	441, 776, 847, 1329
MalI	GATC	8 cut(s)	315, 533, 540, 549, 761, 861, 962, 1290
MboI	GATC	8 cut(s)	313, 531, 538, 547, 759, 859, 960, 1288
MfeI	CAATTG	1 cut(s)	1430
MflI	RGATCY	2 cut(s)	538, 859
MhlI	GDGCHC	2 cut(s)	105, 195
MlsI	TGGCCA	1 cut(s)	1100
MluCI	AATT	7 cut(s)	34, 375, 810, 869, 1254, 1266, 1430
MluNI	TGGCCA	1 cut(s)	1100
MlyI	GAGTC	1 cut(s)	1568
MmeI	TCCRAC	3 cut(s)	164, 374, 1155
MnlI	CCTC	6 cut(s)	63, 273, 304, 414, 965, 1139
Mox20I	TGGCCA	1 cut(s)	1100
Mph1103I	ATGCAT	1 cut(s)	488
MroI	TCCGGA	1 cut(s)	957
MscI	TGGCCA	1 cut(s)	1100
MseI	TTAA	3 cut(s)	489, 498, 1257
MslI	CAYNNNNRTG	4 cut(s)	96, 167, 462, 519
Msp20I	TGGCCA	1 cut(s)	1100
MspI	CCGG	5 cut(s)	122, 144, 154, 958, 1002
MspR9I	CCNGG	8 cut(s)	64, 123, 155, 422, 574, 1002, 1102, 1251
MunI	CAATTG	1 cut(s)	1430
MvaI	CCWGG	5 cut(s)	64, 422, 574, 1102, 1251
MwoI	GCNNNNNNNGC	6 cut(s)	93, 690, 840, 1040, 1246, 1553
NciI	CCSGG	3 cut(s)	123, 155, 1002
NcoI	CCATGG	3 cut(s)	612, 631, 685
NdeI	CATATG	1 cut(s)	715
NdeII	GATC	8 cut(s)	313, 531, 538, 547, 759, 859, 960, 1288
NlaIV	GGNNCC	3 cut(s)	74, 261, 1317
NmuCI	GTSAC	1 cut(s)	776
NsiI	ATGCAT	1 cut(s)	488
NspI	RCATGY	2 cut(s)	1055, 1244
PaeI	GCATGC	1 cut(s)	1244
PagI	TCATGA	1 cut(s)	1285
PciSI	GCTCTTC	1 cut(s)	789
PfeI	GAWTC	7 cut(s)	454, 836, 1216, 1302, 1415, 1482, 1566
PfoI	TCCNGGA	2 cut(s)	153, 420
PinAI	ACCGGT	1 cut(s)	143
PkrI	GCNGC	6 cut(s)	86, 245, 1036, 1123, 1232, 1239
PleI	GAGTC	1 cut(s)	1567
PpsI	GAGTC	1 cut(s)	1567
PshBI	ATTAAT	1 cut(s)	489
Psp124BI	GAGCTC	2 cut(s)	105, 195
Psp1406I	AACGTT	1 cut(s)	222
Psp6I	CCWGG	5 cut(s)	62, 420, 572, 1100, 1249
PspGI	CCWGG	5 cut(s)	62, 420, 572, 1100, 1249
PspN4I	GGNNCC	3 cut(s)	74, 261, 1317
PspPI	GGNCC	3 cut(s)	16, 146, 609
PsrI	GAACNNNNNNTAC	2 cut(s)	1445, 1477
PstI	CTGCAG	1 cut(s)	1039
PsuI	RGATCY	2 cut(s)	538, 859
RsaI	GTAC	7 cut(s)	365, 674, 1185, 1388, 1398, 1428, 1463
RsaNI	GTAC	7 cut(s)	364, 673, 1184, 1387, 1397, 1427, 1462
RseI	CAYNNNNRTG	4 cut(s)	96, 167, 462, 519
SacI	GAGCTC	2 cut(s)	105, 195
SalI	GTCGAC	1 cut(s)	4
SapI	GCTCTTC	1 cut(s)	789
SaqAI	TTAA	3 cut(s)	489, 498, 1257
SatI	GCNGC	6 cut(s)	85, 244, 1035, 1122, 1231, 1238
Sau3AI	GATC	8 cut(s)	313, 531, 538, 547, 759, 859, 960, 1288
Sau96I	GGNCC	3 cut(s)	16, 146, 609
ScaI	AGTACT	1 cut(s)	1463
SchI	GAGTC	1 cut(s)	1568
ScrFI	CCNGG	8 cut(s)	64, 123, 155, 422, 574, 1002, 1102, 1251
SduI	GDGCHC	2 cut(s)	105, 195
SfaNI	GCATC	5 cut(s)	445, 523, 1030, 1108, 1236
SfcI	CTRYAG	1 cut(s)	1035
SinI	GGWCC	3 cut(s)	16, 146, 609
SmiMI	CAYNNNNRTG	4 cut(s)	96, 167, 462, 519
SmlI	CTYRAG	1 cut(s)	1440
SmoI	CTYRAG	1 cut(s)	1440
SphI	GCATGC	1 cut(s)	1244
Sse9I	AATT	7 cut(s)	34, 375, 810, 869, 1254, 1266, 1430
SsiI	CCGC	4 cut(s)	188, 607, 929, 1231
SspMI	CTAG	2 cut(s)	407, 1352
SstI	GAGCTC	2 cut(s)	105, 195
StyD4I	CCNGG	8 cut(s)	62, 121, 153, 420, 572, 1000, 1100, 1249
StyI	CCWWGG	6 cut(s)	381, 612, 631, 653, 685, 1311
TaaI	ACNGT	7 cut(s)	208, 461, 586, 883, 1282, 1370, 1401
TaiI	ACGT	3 cut(s)	113, 225, 288
TaqI	TCGA	5 cut(s)	5, 353, 622, 1296, 1480
TasI	AATT	7 cut(s)	34, 375, 810, 869, 1254, 1266, 1430
TatI	WGTACW	4 cut(s)	1183, 1386, 1396, 1461
TauI	GCSGC	1 cut(s)	1233
TfiI	GAWTC	7 cut(s)	454, 836, 1216, 1302, 1415, 1482, 1566
Tru1I	TTAA	3 cut(s)	489, 498, 1257
Tru9I	TTAA	3 cut(s)	489, 498, 1257
TscAI	CASTG	5 cut(s)	323, 464, 886, 1375, 1514
TseFI	GTSAC	1 cut(s)	776
TseI	GCWGC	5 cut(s)	84, 243, 1034, 1121, 1237
Tsp45I	GTSAC	1 cut(s)	776
TspDTI	ATGAA	7 cut(s)	157, 233, 732, 803, 939, 1083, 1274
TspRI	CASTG	5 cut(s)	323, 464, 886, 1375, 1514
VpaK11BI	GGWCC	3 cut(s)	16, 146, 609
VspI	ATTAAT	1 cut(s)	489
XapI	RAATTY	1 cut(s)	869
XbaI	TCTAGA	1 cut(s)	406
XceI	RCATGY	2 cut(s)	1055, 1244
XcmI	CCANNNNNNNNNTGG	1 cut(s)	692
XmiI	GTMKAC	1 cut(s)	5
XspI	CTAG	2 cut(s)	407, 1352
ZrmI	AGTACT	1 cut(s)	1463
Zsp2I	ATGCAT	1 cut(s)	488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.