Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0002257

Physical Location & Seq

Genomic Coordinates Reverse (-)

12129357 .. 12132505

Gene Structure 3149 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022781

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2043 bp

ATGATGATTCCAAGCCTTGAAGCCTGCAAGAAGAGGAAGCGGAGGCCAAAGGTTTATGGGTTCCATTCATTTGGGGAACCCGGCTACCCGATTCTTCCACTGGGTCCATTCCGTGATAACATTCGTCTCTTTCTTCAACAATGTGCAGAGCTTGAGAGTTACAGTGTTCAGGGCATGCCCGTTTGGTGCACTCTTCTTGTTCATGACAACCGAAGCCTTGTTCTTCCTCTCTACACCATTGAAGAGAACGTCAAGACCTCCGACACCCCCTTCTGCGATTACTGCCGATGCACTGGTTGGAGCAACCATTTTGTATCGAAGAGAAAGTACCACATGATAATTCCAATGGATGATGACTGGAATAAGCCTTTGGATGATGGTATCTTGGATATTTCAACCCATCTCTTACATGGGTTAATTCACTGTAATGGGTTTGCTCATTTGCTATGCATCAAGGGACTTGAAGGTGGTTCTAAGCATCTTTGTGGCAGAGAGCTCATGGATCTTTGGGATCGGATCTGCATTAATCTTCGAACCCGGAAAATCACAGTCGAAGATGTCTCAAAGAAACGGTCTATGGATCTTCGCCTGCTCCATGGAGTTGCTTATGGGCATCCTTGGTTTGGTAGATGGGGTTACAAATTTTGCCATGGAAGCTTTGGGGTCAAAGACCACATTTATGAAAGAGCACTTGAGGTTCTCAGCTCATTAGAACTTGAAAAGATCATCCAAGATTTTAATGACATGGACCAGTATGAAGAGCTGAAGAAAATTGTTCGTTACTACAGATATTTGAGTGAAACACAGTTAGTTACTATCAAAGATCTTCTCAGATTTATGCTTACTGTCAAGGCTTGCTTTCCTGCACAGAGAAAATCGCTACTTCCTAGTGCAAAACCTGCAGATGTGATTGAGAATGCAAAACCTGCAAGAGAATCCGTCAAGATCAAGCCTCTGAAAAAGGAAAAGTCTTCAAAGTATAGGAAGTTTGCTACTGTTGTTTCTCACATGGATAGCAGATGGCCTGCCAGAAGACTAGAGTTTGCAGCAGATGTGATTGTGAATGCACTGAAAGAAAAGAAAGAGAAGGACTTTAGAAATGGTGGGATGGCCCGGCAAGATGTGCGAGATGCAGCTAGGTTGCATATTGGAGATACAGGTTTGTTGGATTATGTGCTGAAATCACTGAACAACGTGGTTGTTGGTAATCAGGTTGTCTGCCGTTCAGTGAACCCAACCACTCGGATTTTGGAATATACAGTTCATGATCTTAATGATGGGGATAAAGTGCCTGAACCTGAGAAAGAGATACTTCCCCTACCCCCTCGACCAGCAGCTCCAGTTCCTGGAATTGACGTTTACAGTGATGTTCTTTATTTGTATGAGCATGTACTGTTGGGATATCCAGAATCTGGATTGTTAGAGTTGGCTACACAAGCAGTATTGGACACTAAGCACTTTGTAAAGGAATGTCCATTTAGGGATGAGAAAGAGCAGTTACTGACATTGTTTTGCCAAATCTTGCCAAGCTTGACTGATAAGGAAATTGAATTCAAGAGGGGGTTGCCTCCAGGTGAGATAGTGGTAATGCCACTGGATGCAACTGTTGGAGAGCTAAAGCAGGAAGCTGAGAGTGCACTGAGGGATACATATTGTATCACAGAACAGTTTGTGGTGATGGAAATCAAAGGCTTGGAGGAATCAGATGATATGGAAGTGCTTTCTGGAGCAGTTCAATCGGGGACAGAGGTTGGAGTGAGAGGGAGCGGGATAGATTTAGACACACCGTTGAGGTACCAAGGGGGATCGGACACATGGATGGTGAGATGTGAATGTGGGGCTACAGATGATGATGGTGAAAGGATGGTGGCCTGTGATATATGTGAAGTGTGGCAGCATACACGCTGCTGTGGAATGGAGGATGCTGATGAAGTCCCACGTCTGTTCATTTGCTCAACATGTTACATTTCACTTGTTCCGCCTAAAACTGAACCTGCAGCTAAATTTGACTGTTCCACTGCATTTCTGGAGTGGAGACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000212 GO:0000226 GO:0000228 GO:0000280 GO:0000785 GO:0000790 GO:0000791 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005719 GO:0006323 GO:0006355 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007059 GO:0007060 GO:0007140 GO:0007275 GO:0007276 GO:0008134 GO:0008150 GO:0009555 GO:0009889 GO:0009987 GO:0010032 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0030154 GO:0030261 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0033613 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044703 GO:0045132 GO:0048229 GO:0048232 GO:0048235 GO:0048285 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0051321 GO:0051704 GO:0055046 GO:0060255 GO:0065007 GO:0070013 GO:0070192 GO:0071103 GO:0071840 GO:0080090 GO:0097159 GO:0098813 GO:0140013 GO:1901363 GO:1903046 GO:1903506 GO:1990188 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD

Protein Analysis

681

Amino Acids

77.46

Weight (kDa)

5.94

Isoelectric Point (pI)

42.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_plant_repro	PF25874	340 - 423	1.1e-34	Winged helix-turn-helix domain in plant reproductive proteins
Ubiquitin_At1g33420	PF25565	498 - 590	1.5e-29	At1g33420-like, ubiquitin-like domain
PHD	PF00628	610 - 654	5.8e-06	PHD-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002257)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66170
fragaria_vesca	FvH4_1g29990 FvH4_1g29990 FvH4_1g29990 FvH4_6g02390
malus_domestica	MD09G1267100.v1.1 MD17G1254900.v1.1 MD17G1255100.v1.1 MD17G1260200.v1.1
prunus_persica	Prupe.3G164800_v2.0.a1
pyrus_communis	pycom12401g00150 pycom461g00270
rosa_chinensis	RchiOBHm_Chr3g0450161 RchiOBHm_Chr3g0492331
rosa_laevigata	RLG00000022781 RLG00000022872 RLG00000022874 RLG00000022875 RLG00000025750
rosa_multiflora	Rmu_co8200976.1_g000001 Rmu_sc0003156.1_g000026 Rmu_sc0010184.1_g000005 Rmu_sc0010184.1_g000015 Rmu_sc0020297.1_g000001
rosa_roxburghii	Rroxscaffold_3G00226630 Rroxscaffold_6G00392410 Rroxscaffold_6G00427920
rosa_rugosa	Rorug02G0625900 Rorug03G0253300
rosa_samantha	Rh2AG397300 Rh2CG383900 Rh3AG025300 Rh3AG303200 Rh3BG025900 Rh3BG339200 Rh3BG339300 Rh3CG024800 Rh3CG336400 Rh3DG025900 Rh3DG327500 Rh3DG338500
rosa_wichuraiana	Rw3G002030 Rw3G026750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	907, 934, 2002
Acc65I	GGTACC	1 cut(s)	1794
AccB1I	GGYRCC	1 cut(s)	1794
AccB7I	CCANNNNNTGG	2 cut(s)	1346, 1412
AccBSI	CCGCTC	1 cut(s)	1767
AciI	CCGC	3 cut(s)	40, 1767, 1979
AclWI	GGATC	5 cut(s)	510, 519, 524, 588, 1813
AcsI	RAATTY	3 cut(s)	641, 1550, 2003
AcuI	CTGAAG	1 cut(s)	785
AfaI	GTAC	3 cut(s)	329, 1392, 1796
AfiI	CCNNNNNNNGG	3 cut(s)	623, 1346, 1412
AflIII	ACRYGT	1 cut(s)	1958
AjiI	CACGTC	1 cut(s)	1940
AjnI	CCWGG	2 cut(s)	1345, 1570
AjuI	GAANNNNNNNTTGG	2 cut(s)	353, 385
Alw21I	GWGCWC	4 cut(s)	191, 498, 691, 1639
Alw26I	GTCTC	3 cut(s)	131, 565, 2029
Alw44I	GTGCAC	2 cut(s)	187, 1635
AlwI	GGATC	5 cut(s)	510, 519, 524, 588, 1813
AlwNI	CAGNNNCTG	3 cut(s)	1346, 1412, 1501
AoxI	GGCC	4 cut(s)	44, 1022, 1110, 1869
ApaLI	GTGCAC	2 cut(s)	187, 1635
ApeKI	GCWGC	6 cut(s)	1046, 1133, 1334, 1894, 1905, 1997
ApoI	RAATTY	3 cut(s)	641, 1550, 2003
ArsI	GACNNNNNNTTYG	2 cut(s)	557, 589
AseI	ATTAAT	1 cut(s)	525
Asp718I	GGTACC	1 cut(s)	1794
AspS9I	GGNCC	3 cut(s)	104, 748, 1111
AsuC2I	CCSGG	3 cut(s)	81, 538, 1114
AsuHPI	GGTGA	4 cut(s)	1586, 1687, 1834, 1868
AsuII	TTCGAA	1 cut(s)	532
AvaII	GGWCC	2 cut(s)	104, 748
BaeGI	GKGCMC	2 cut(s)	191, 1639
BanI	GGYRCC	1 cut(s)	1794
BanII	GRGCYC	1 cut(s)	498
BarI	GAAGNNNNNNTAC	2 cut(s)	311, 343
BbsI	GAAGAC	2 cut(s)	963, 1039
Bbv12I	GWGCWC	4 cut(s)	191, 498, 691, 1639
BbvI	GCAGC	6 cut(s)	1058, 1145, 1346, 1892, 1906, 2009
BceAI	ACGGC	1 cut(s)	1206
BcgI	CGANNNNNNTGC	2 cut(s)	1719, 1753
BciT130I	CCWGG	2 cut(s)	1347, 1572
BciVI	GTATCC	1 cut(s)	1639
BcnI	CCSGG	3 cut(s)	81, 538, 1114
BcoDI	GTCTC	3 cut(s)	131, 565, 2029
BfaI	CTAG	3 cut(s)	888, 1037, 1137
BfmI	CTRYAG	4 cut(s)	784, 900, 1842, 1995
BfuAI	ACCTGC	3 cut(s)	907, 934, 2002
BfuI	GTATCC	1 cut(s)	1639
BglII	AGATCT	1 cut(s)	823
BisI	GCNGC	6 cut(s)	1047, 1134, 1335, 1895, 1906, 1998
BlsI	GCNGC	6 cut(s)	1048, 1135, 1336, 1896, 1907, 1999
Bme1390I	CCNGG	5 cut(s)	81, 538, 1114, 1347, 1572
Bme18I	GGWCC	2 cut(s)	104, 748
BmgBI	CACGTC	1 cut(s)	1940
BmgT120I	GGNCC	3 cut(s)	104, 748, 1111
BmiI	GGNNCC	4 cut(s)	62, 78, 105, 1796
BmrFI	CCNGG	5 cut(s)	81, 538, 1114, 1347, 1572
BmrI	ACTGGG	1 cut(s)	110
BmsI	GCATC	7 cut(s)	278, 459, 487, 622, 1120, 1588, 1912
BmuI	ACTGGG	1 cut(s)	110
BpiI	GAAGAC	2 cut(s)	963, 1039
BpmI	CTGGAG	3 cut(s)	1323, 1554, 1746
Bpu14I	TTCGAA	1 cut(s)	532
BpuEI	CTTGAG	2 cut(s)	173, 713
BpuMI	CCSGG	3 cut(s)	81, 538, 1114
BsaBI	GATNNNNATC	1 cut(s)	1682
BsaJI	CCNNGG	4 cut(s)	595, 617, 649, 1798
Bsc4I	CCNNNNNNNGG	3 cut(s)	623, 1346, 1412
Bse1I	ACTGG	6 cut(s)	105, 298, 362, 751, 1340, 1599
Bse8I	GATNNNNATC	1 cut(s)	1682
BseBI	CCWGG	2 cut(s)	1347, 1572
BseDI	CCNNGG	4 cut(s)	595, 617, 649, 1798
BseJI	GATNNNNATC	1 cut(s)	1682
BseLI	CCNNNNNNNGG	3 cut(s)	623, 1346, 1412
BseMII	CTCAG	5 cut(s)	715, 844, 1290, 1620, 1631
BseNI	ACTGG	6 cut(s)	105, 298, 362, 751, 1340, 1599
BseSI	GKGCMC	2 cut(s)	191, 1639
BseXI	GCAGC	6 cut(s)	1058, 1145, 1346, 1892, 1906, 2009
BsgI	GTGCAG	2 cut(s)	165, 849
BshFI	GGCC	4 cut(s)	46, 1024, 1112, 1871
BshNI	GGYRCC	1 cut(s)	1794
BsiHKAI	GWGCWC	4 cut(s)	191, 498, 691, 1639
BsiSI	CCGG	3 cut(s)	81, 538, 1114
BslFI	GGGAC	3 cut(s)	471, 1756, 1919
BslI	CCNNNNNNNGG	3 cut(s)	623, 1346, 1412
BsmAI	GTCTC	3 cut(s)	131, 565, 2029
BsmBI	CGTCTC	1 cut(s)	131
BsmFI	GGGAC	3 cut(s)	471, 1756, 1919
BsmI	GAATGC	2 cut(s)	922, 1069
BsnI	GGCC	4 cut(s)	46, 1024, 1112, 1871
Bsp119I	TTCGAA	1 cut(s)	532
Bsp1286I	GDGCHC	4 cut(s)	191, 498, 691, 1639
Bsp143I	GATC	9 cut(s)	502, 511, 516, 580, 723, 823, 945, 1267, 1805
Bsp19I	CCATGG	2 cut(s)	595, 649
BspACI	CCGC	3 cut(s)	40, 1767, 1979
BspANI	GGCC	4 cut(s)	46, 1024, 1112, 1871
BspCNI	CTCAG	5 cut(s)	714, 843, 1291, 1621, 1632
BspHI	TCATGA	2 cut(s)	202, 1264
BspLI	GGNNCC	4 cut(s)	62, 78, 105, 1796
BspMAI	CTGCAG	2 cut(s)	904, 1999
BspMI	ACCTGC	3 cut(s)	907, 934, 2002
BspPI	GGATC	5 cut(s)	510, 519, 524, 588, 1813
BspQI	GCTCTTC	1 cut(s)	753
BspT104I	TTCGAA	1 cut(s)	532
BspT107I	GGYRCC	1 cut(s)	1794
BsrBI	CCGCTC	1 cut(s)	1767
BsrI	ACTGG	6 cut(s)	105, 298, 362, 751, 1340, 1599
BssECI	CCNNGG	4 cut(s)	595, 617, 649, 1798
BssMI	GATC	9 cut(s)	502, 511, 516, 580, 723, 823, 945, 1267, 1805
BssT1I	CCWWGG	4 cut(s)	595, 617, 649, 1798
Bst2UI	CCWGG	2 cut(s)	1347, 1572
Bst6I	CTCTTC	5 cut(s)	26, 198, 237, 314, 753
BstAPI	GCANNNNNTGC	3 cut(s)	899, 926, 1123
BstBI	TTCGAA	1 cut(s)	532
BstC8I	GCNNGC	5 cut(s)	25, 176, 590, 856, 1026
BstDEI	CTNAG	7 cut(s)	474, 701, 830, 1299, 1452, 1629, 1640
BstDSI	CCRYGG	2 cut(s)	595, 649
BstKTI	GATC	9 cut(s)	505, 514, 519, 583, 726, 826, 948, 1270, 1808
BstMAI	GTCTC	3 cut(s)	131, 565, 2029
BstMBI	GATC	9 cut(s)	502, 511, 516, 580, 723, 823, 945, 1267, 1805
BstMWI	GCNNNNNNNGC	7 cut(s)	282, 654, 899, 926, 1123, 1436, 1634
BstNI	CCWGG	2 cut(s)	1347, 1572
BstNSI	RCATGY	3 cut(s)	178, 1391, 1962
BstSCI	CCNGG	5 cut(s)	79, 536, 1112, 1345, 1570
BstSFI	CTRYAG	4 cut(s)	784, 900, 1842, 1995
BstSLI	GKGCMC	2 cut(s)	191, 1639
BstV1I	GCAGC	6 cut(s)	1058, 1145, 1346, 1892, 1906, 2009
BstV2I	GAAGAC	2 cut(s)	963, 1039
BstX2I	RGATCY	4 cut(s)	502, 516, 580, 823
BstXI	CCANNNNNNTGG	1 cut(s)	71
BstYI	RGATCY	4 cut(s)	502, 516, 580, 823
BsuI	GTATCC	1 cut(s)	1639
BsuRI	GGCC	4 cut(s)	46, 1024, 1112, 1871
BtgI	CCRYGG	2 cut(s)	595, 649
BtrI	CACGTC	1 cut(s)	1940
BtsI	GCAGTG	1 cut(s)	2016
BveI	ACCTGC	3 cut(s)	907, 934, 2002
Cac8I	GCNNGC	5 cut(s)	25, 176, 590, 856, 1026
CaiI	CAGNNNCTG	3 cut(s)	1346, 1412, 1501
CciI	TCATGA	2 cut(s)	202, 1264
Cfr13I	GGNCC	3 cut(s)	104, 748, 1111
Csp6I	GTAC	3 cut(s)	328, 1391, 1795
CviQI	GTAC	3 cut(s)	328, 1391, 1795
DdeI	CTNAG	7 cut(s)	474, 701, 830, 1299, 1452, 1629, 1640
DpnI	GATC	9 cut(s)	504, 513, 518, 582, 725, 825, 947, 1269, 1807
DpnII	GATC	9 cut(s)	502, 511, 516, 580, 723, 823, 945, 1267, 1805
Eam1104I	CTCTTC	5 cut(s)	26, 198, 237, 314, 753
EarI	CTCTTC	5 cut(s)	26, 198, 237, 314, 753
EciI	GGCGGA	1 cut(s)	1968
Ecl136II	GAGCTC	1 cut(s)	496
Eco130I	CCWWGG	4 cut(s)	595, 617, 649, 1798
Eco24I	GRGCYC	1 cut(s)	498
Eco32I	GATATC	1 cut(s)	1403
Eco47I	GGWCC	2 cut(s)	104, 748
Eco53kI	GAGCTC	1 cut(s)	496
Eco57I	CTGAAG	1 cut(s)	785
EcoICRI	GAGCTC	1 cut(s)	496
EcoRI	GAATTC	1 cut(s)	1550
EcoRII	CCWGG	2 cut(s)	1345, 1570
EcoRV	GATATC	1 cut(s)	1403
EcoT14I	CCWWGG	4 cut(s)	595, 617, 649, 1798
EcoT22I	ATGCAT	1 cut(s)	452
EcoT38I	GRGCYC	1 cut(s)	498
ErhI	CCWWGG	4 cut(s)	595, 617, 649, 1798
Esp3I	CGTCTC	1 cut(s)	131
FalI	AAGNNNNNCTT	4 cut(s)	842, 874, 1296, 1328
FaqI	GGGAC	3 cut(s)	471, 1756, 1919
FauI	CCCGC	1 cut(s)	1760
Fnu4HI	GCNGC	6 cut(s)	1047, 1134, 1335, 1895, 1906, 1998
FriOI	GRGCYC	1 cut(s)	498
Fsp4HI	GCNGC	6 cut(s)	1047, 1134, 1335, 1895, 1906, 1998
FspBI	CTAG	3 cut(s)	888, 1037, 1137
GluI	GCNGC	6 cut(s)	1047, 1134, 1335, 1895, 1906, 1998
GsuI	CTGGAG	3 cut(s)	1323, 1554, 1746
HaeIII	GGCC	4 cut(s)	46, 1024, 1112, 1871
HapII	CCGG	3 cut(s)	81, 538, 1114
HindIII	AAGCTT	2 cut(s)	655, 1528
HinfI	GANTC	5 cut(s)	7, 91, 935, 1409, 1700
HpaII	CCGG	3 cut(s)	81, 538, 1114
HphI	GGTGA	4 cut(s)	1586, 1687, 1834, 1868
Hpy166II	GTNNAC	4 cut(s)	189, 1231, 1360, 1637
Hpy188I	TCNGA	7 cut(s)	262, 516, 833, 957, 1245, 1705, 1810
Hpy188III	TCNNGA	9 cut(s)	203, 253, 943, 1265, 1406, 1413, 1555, 1725, 2027
Hpy8I	GTNNAC	4 cut(s)	189, 1231, 1360, 1637
HpyAV	CCTTC	3 cut(s)	280, 458, 1081
HpyCH4IV	ACGT	4 cut(s)	249, 1194, 1356, 1939
HpyF10VI	GCNNNNNNNGC	7 cut(s)	282, 654, 899, 926, 1123, 1436, 1634
HpyF3I	CTNAG	7 cut(s)	474, 701, 830, 1299, 1452, 1629, 1640
HpySE526I	ACGT	4 cut(s)	249, 1194, 1356, 1939
KpnI	GGTACC	1 cut(s)	1798
Kzo9I	GATC	9 cut(s)	502, 511, 516, 580, 723, 823, 945, 1267, 1805
LguI	GCTCTTC	1 cut(s)	753
LmnI	GCTCC	5 cut(s)	300, 597, 1342, 1727, 1764
Lsp1109I	GCAGC	6 cut(s)	1058, 1145, 1346, 1892, 1906, 2009
LweI	GCATC	7 cut(s)	278, 459, 487, 622, 1120, 1588, 1912
MaeI	CTAG	3 cut(s)	888, 1037, 1137
MaeII	ACGT	4 cut(s)	249, 1194, 1356, 1939
MaeIII	GTNAC	6 cut(s)	158, 635, 779, 811, 1497, 1961
MalI	GATC	9 cut(s)	504, 513, 518, 582, 725, 825, 947, 1269, 1807
MbiI	CCGCTC	1 cut(s)	1767
MboI	GATC	9 cut(s)	502, 511, 516, 580, 723, 823, 945, 1267, 1805
MflI	RGATCY	4 cut(s)	502, 516, 580, 823
MhlI	GDGCHC	4 cut(s)	191, 498, 691, 1639
MluCI	AATT	8 cut(s)	339, 417, 641, 771, 1350, 1545, 1550, 2003
MmeI	TCCRAC	5 cut(s)	278, 285, 1146, 1588, 1732
Mph1103I	ATGCAT	1 cut(s)	452
MseI	TTAA	4 cut(s)	416, 525, 738, 1272
MslI	CAYNNNNRTG	4 cut(s)	426, 483, 678, 1817
MspI	CCGG	3 cut(s)	81, 538, 1114
MspR9I	CCNGG	5 cut(s)	81, 538, 1114, 1347, 1572
Mva1269I	GAATGC	2 cut(s)	922, 1069
MvaI	CCWGG	2 cut(s)	1347, 1572
MwoI	GCNNNNNNNGC	7 cut(s)	282, 654, 899, 926, 1123, 1436, 1634
NciI	CCSGG	3 cut(s)	81, 538, 1114
NcoI	CCATGG	2 cut(s)	595, 649
NdeII	GATC	9 cut(s)	502, 511, 516, 580, 723, 823, 945, 1267, 1805
NlaIV	GGNNCC	4 cut(s)	62, 78, 105, 1796
NsiI	ATGCAT	1 cut(s)	452
NspI	RCATGY	3 cut(s)	178, 1391, 1962
NspV	TTCGAA	1 cut(s)	532
PaeI	GCATGC	1 cut(s)	178
PagI	TCATGA	2 cut(s)	202, 1264
PciI	ACATGT	1 cut(s)	1958
PciSI	GCTCTTC	1 cut(s)	753
PctI	GAATGC	2 cut(s)	922, 1069
PfeI	GAWTC	5 cut(s)	7, 91, 935, 1409, 1700
PflMI	CCANNNNNTGG	2 cut(s)	1346, 1412
PfoI	TCCNGGA	1 cut(s)	1345
PkrI	GCNGC	6 cut(s)	1048, 1135, 1336, 1896, 1907, 1999
PscI	ACATGT	1 cut(s)	1958
PshBI	ATTAAT	1 cut(s)	525
Psp124BI	GAGCTC	1 cut(s)	498
Psp6I	CCWGG	2 cut(s)	1345, 1570
PspGI	CCWGG	2 cut(s)	1345, 1570
PspN4I	GGNNCC	4 cut(s)	62, 78, 105, 1796
PspPI	GGNCC	3 cut(s)	104, 748, 1111
PstI	CTGCAG	2 cut(s)	904, 1999
PstNI	CAGNNNCTG	3 cut(s)	1346, 1412, 1501
PsuI	RGATCY	4 cut(s)	502, 516, 580, 823
RsaI	GTAC	3 cut(s)	329, 1392, 1796
RsaNI	GTAC	3 cut(s)	328, 1391, 1795
RseI	CAYNNNNRTG	4 cut(s)	426, 483, 678, 1817
SacI	GAGCTC	1 cut(s)	498
SapI	GCTCTTC	1 cut(s)	753
SaqAI	TTAA	4 cut(s)	416, 525, 738, 1272
SatI	GCNGC	6 cut(s)	1047, 1134, 1335, 1895, 1906, 1998
Sau3AI	GATC	9 cut(s)	502, 511, 516, 580, 723, 823, 945, 1267, 1805
Sau96I	GGNCC	3 cut(s)	104, 748, 1111
ScrFI	CCNGG	5 cut(s)	81, 538, 1114, 1347, 1572
SduI	GDGCHC	4 cut(s)	191, 498, 691, 1639
SfaNI	GCATC	7 cut(s)	278, 459, 487, 622, 1120, 1588, 1912
SfcI	CTRYAG	4 cut(s)	784, 900, 1842, 1995
SfuI	TTCGAA	1 cut(s)	532
SinI	GGWCC	2 cut(s)	104, 748
SmiMI	CAYNNNNRTG	4 cut(s)	426, 483, 678, 1817
SmlI	CTYRAG	2 cut(s)	152, 692
SmoI	CTYRAG	2 cut(s)	152, 692
SphI	GCATGC	1 cut(s)	178
Sse9I	AATT	8 cut(s)	339, 417, 641, 771, 1350, 1545, 1550, 2003
SsiI	CCGC	3 cut(s)	40, 1767, 1979
SspMI	CTAG	3 cut(s)	888, 1037, 1137
SstI	GAGCTC	1 cut(s)	498
StyD4I	CCNGG	5 cut(s)	79, 536, 1112, 1345, 1570
StyI	CCWWGG	4 cut(s)	595, 617, 649, 1798
TaiI	ACGT	4 cut(s)	252, 1197, 1359, 1942
TaqI	TCGA	4 cut(s)	317, 532, 552, 1327
TasI	AATT	8 cut(s)	339, 417, 641, 771, 1350, 1545, 1550, 2003
TatI	WGTACW	1 cut(s)	1390
TfiI	GAWTC	5 cut(s)	7, 91, 935, 1409, 1700
Tru1I	TTAA	4 cut(s)	416, 525, 738, 1272
Tru9I	TTAA	4 cut(s)	416, 525, 738, 1272
TseI	GCWGC	6 cut(s)	1046, 1133, 1334, 1894, 1905, 1997
TspDTI	ATGAA	7 cut(s)	57, 191, 696, 771, 1253, 1936, 1944
TspGWI	ACGGA	2 cut(s)	101, 928
Van91I	CCANNNNNTGG	2 cut(s)	1346, 1412
VneI	GTGCAC	2 cut(s)	187, 1635
VpaK11BI	GGWCC	2 cut(s)	104, 748
VspI	ATTAAT	1 cut(s)	525
XapI	RAATTY	3 cut(s)	641, 1550, 2003
XceI	RCATGY	3 cut(s)	178, 1391, 1962
XcmI	CCANNNNNNNNNTGG	4 cut(s)	407, 656, 1246, 2023
XspI	CTAG	3 cut(s)	888, 1037, 1137
Zsp2I	ATGCAT	1 cut(s)	452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.