Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8200976.1

Orthogroup ID

OG0002257

Physical Location & Seq

Genomic Coordinates Forward (+)

23 .. 712

Gene Structure 690 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8200976.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

atggaacttcgactgctccatgggattgcttatggacatccttggttcggtagatgggggtacaggttttgccatggaagctttggggttgcagaagaaacatatgaaagagcgcttgatattctcagctcaatagagcttgaaaagatcatccaagattttagtgacatggaagagtgtgaagagctgaagagagtaattcattgctacaaacattggagcgaatcaagcttggttacaatcaaagatcttctcaaatttatgctcactgtcaaggctggctgtcctgtgcaaagaaaagtcagaaaaccgaaaccgcctactgctactactctttcatccctccggatcaagtcccatctgtttgctgatgttatttctcacaaccccggcagacatcctgcaagaagacaaaagatggccgcagatgcaattgtgcatgtattgagagaaaatgaaaagaaaggctttgtgaatggtgagatggccaggcaagatgtaagagatgcagctctgttgcatagtagaagaagagggttgcctatcagagatataggtttgttggataatgtgctgagcaagctggacaatgtgattattgggaatcacattgtctgccgcaagctgcatgcgatgcctggaattaagactggaattaggaaatataccgttcatgatcttctcgatgga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000212 GO:0000226 GO:0000228 GO:0000280 GO:0000785 GO:0000790 GO:0000791 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005719 GO:0006323 GO:0006355 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007059 GO:0007060 GO:0007140 GO:0007275 GO:0007276 GO:0008134 GO:0008150 GO:0009555 GO:0009889 GO:0009987 GO:0010032 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0030154 GO:0030261 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0033613 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044703 GO:0045132 GO:0048229 GO:0048232 GO:0048235 GO:0048285 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0051321 GO:0051704 GO:0055046 GO:0060255 GO:0065007 GO:0070013 GO:0070192 GO:0071103 GO:0071840 GO:0080090 GO:0097159 GO:0098813 GO:0140013 GO:1901363 GO:1903046 GO:1903506 GO:1990188 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD

Protein Analysis

230

Amino Acids

26.27

Weight (kDa)

9.49

Isoelectric Point (pI)

41.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002257)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66170
fragaria_vesca	FvH4_1g29990 FvH4_1g29990 FvH4_1g29990 FvH4_6g02390
malus_domestica	MD09G1267100.v1.1 MD17G1254900.v1.1 MD17G1255100.v1.1 MD17G1260200.v1.1
prunus_persica	Prupe.3G164800_v2.0.a1
pyrus_communis	pycom12401g00150 pycom461g00270
rosa_chinensis	RchiOBHm_Chr3g0450161 RchiOBHm_Chr3g0492331
rosa_laevigata	RLG00000022781 RLG00000022872 RLG00000022874 RLG00000022875 RLG00000025750
rosa_multiflora	Rmu_co8200976.1_g000001 Rmu_sc0003156.1_g000026 Rmu_sc0010184.1_g000005 Rmu_sc0010184.1_g000015 Rmu_sc0020297.1_g000001
rosa_roxburghii	Rroxscaffold_3G00226630 Rroxscaffold_6G00392410 Rroxscaffold_6G00427920
rosa_rugosa	Rorug02G0625900 Rorug03G0253300
rosa_samantha	Rh2AG397300 Rh2CG383900 Rh3AG025300 Rh3AG303200 Rh3BG025900 Rh3BG339200 Rh3BG339300 Rh3CG024800 Rh3CG336400 Rh3DG025900 Rh3DG327500 Rh3DG338500
rosa_wichuraiana	Rw3G002030 Rw3G026750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	345
AciI	CCGC	3 cut(s)	317, 423, 619
AclWI	GGATC	1 cut(s)	356
AcoI	YGGCCR	2 cut(s)	420, 486
AcsI	RAATTY	1 cut(s)	257
AcuI	CTGAAG	1 cut(s)	209
AfaI	GTAC	1 cut(s)	62
AfeI	AGCGCT	1 cut(s)	114
AfiI	CCNNNNNNNGG	1 cut(s)	47
AgsI	TTSAA	1 cut(s)	143
AjnI	CCWGG	2 cut(s)	488, 637
AluBI	AGCT	8 cut(s)	81, 129, 139, 187, 231, 512, 583, 625
AluI	AGCT	8 cut(s)	81, 129, 139, 187, 231, 512, 583, 625
AlwI	GGATC	1 cut(s)	356
Aor13HI	TCCGGA	1 cut(s)	345
Aor51HI	AGCGCT	1 cut(s)	114
AoxI	GGCC	2 cut(s)	420, 486
ApeKI	GCWGC	2 cut(s)	509, 625
ApoI	RAATTY	1 cut(s)	257
AspLEI	GCGC	1 cut(s)	115
AsuC2I	CCSGG	1 cut(s)	390
AsuHPI	GGTGA	1 cut(s)	491
BalI	TGGCCA	1 cut(s)	488
BbsI	GAAGAC	1 cut(s)	415
BbvI	GCAGC	2 cut(s)	521, 612
BccI	CCATC	5 cut(s)	48, 366, 412, 478, 680
BciT130I	CCWGG	2 cut(s)	490, 639
BcnI	CCSGG	1 cut(s)	390
BfoI	RGCGCY	1 cut(s)	116
BglII	AGATCT	1 cut(s)	247
BisI	GCNGC	4 cut(s)	423, 510, 619, 626
BlpI	GCTNAGC	1 cut(s)	575
BlsI	GCNGC	4 cut(s)	424, 511, 620, 627
Bme1390I	CCNGG	3 cut(s)	390, 490, 639
BmrFI	CCNGG	3 cut(s)	390, 490, 639
BmsI	GCATC	3 cut(s)	418, 496, 624
BpiI	GAAGAC	1 cut(s)	415
Bpu1102I	GCTNAGC	1 cut(s)	575
BpuMI	CCSGG	1 cut(s)	390
BsaJI	CCNNGG	4 cut(s)	19, 41, 73, 388
BsaWI	WCCGGW	1 cut(s)	345
Bsc4I	CCNNNNNNNGG	1 cut(s)	47
Bse1I	ACTGG	1 cut(s)	655
Bse3DI	GCAATG	1 cut(s)	202
BseAI	TCCGGA	1 cut(s)	345
BseBI	CCWGG	2 cut(s)	490, 639
BseDI	CCNNGG	4 cut(s)	19, 41, 73, 388
BseGI	GGATG	4 cut(s)	37, 150, 338, 397
BseLI	CCNNNNNNNGG	1 cut(s)	47
BseMI	GCAATG	1 cut(s)	202
BseMII	CTCAG	2 cut(s)	139, 566
BseNI	ACTGG	1 cut(s)	655
BseXI	GCAGC	2 cut(s)	521, 612
BshFI	GGCC	2 cut(s)	422, 488
BsiSI	CCGG	2 cut(s)	346, 390
BslFI	GGGAC	1 cut(s)	340
BslI	CCNNNNNNNGG	1 cut(s)	47
BsmFI	GGGAC	1 cut(s)	340
BsnI	GGCC	2 cut(s)	422, 488
Bsp13I	TCCGGA	1 cut(s)	345
Bsp143I	GATC	4 cut(s)	147, 247, 348, 676
Bsp1720I	GCTNAGC	1 cut(s)	575
Bsp19I	CCATGG	2 cut(s)	19, 73
BspACI	CCGC	3 cut(s)	317, 423, 619
BspANI	GGCC	2 cut(s)	422, 488
BspCNI	CTCAG	2 cut(s)	138, 567
BspEI	TCCGGA	1 cut(s)	345
BspHI	TCATGA	1 cut(s)	673
BspPI	GGATC	1 cut(s)	356
BspQI	GCTCTTC	1 cut(s)	177
BsrDI	GCAATG	1 cut(s)	202
BsrI	ACTGG	1 cut(s)	655
BssECI	CCNNGG	4 cut(s)	19, 41, 73, 388
BssMI	GATC	4 cut(s)	147, 247, 348, 676
BssT1I	CCWWGG	3 cut(s)	19, 41, 73
Bst2UI	CCWGG	2 cut(s)	490, 639
Bst4CI	ACNGT	2 cut(s)	271, 670
Bst6I	CTCTTC	4 cut(s)	168, 177, 185, 526
BstAPI	GCANNNNNTGC	1 cut(s)	634
BstC8I	GCNNGC	4 cut(s)	280, 581, 623, 630
BstDEI	CTNAG	2 cut(s)	125, 575
BstDSI	CCRYGG	2 cut(s)	19, 73
BstF5I	GGATG	4 cut(s)	37, 150, 338, 397
BstH2I	RGCGCY	1 cut(s)	116
BstHHI	GCGC	1 cut(s)	115
BstKTI	GATC	4 cut(s)	150, 250, 351, 679
BstMBI	GATC	4 cut(s)	147, 247, 348, 676
BstMWI	GCNNNNNNNGC	5 cut(s)	78, 228, 428, 580, 634
BstNI	CCWGG	2 cut(s)	490, 639
BstNSI	RCATGY	2 cut(s)	443, 632
BstSCI	CCNGG	3 cut(s)	388, 488, 637
BstV1I	GCAGC	2 cut(s)	521, 612
BstV2I	GAAGAC	1 cut(s)	415
BstX2I	RGATCY	1 cut(s)	247
BstYI	RGATCY	1 cut(s)	247
BsuRI	GGCC	2 cut(s)	422, 488
BtgI	CCRYGG	2 cut(s)	19, 73
BtgZI	GCGATG	1 cut(s)	647
BtsCI	GGATG	4 cut(s)	37, 150, 338, 397
BtsIMutI	CAGTG	1 cut(s)	267
Cac8I	GCNNGC	4 cut(s)	280, 581, 623, 630
CciI	TCATGA	1 cut(s)	673
CfoI	GCGC	1 cut(s)	115
Csp6I	GTAC	1 cut(s)	61
CviAII	CATG	6 cut(s)	20, 74, 169, 440, 629, 674
CviQI	GTAC	1 cut(s)	61
DdeI	CTNAG	2 cut(s)	125, 575
DpnI	GATC	4 cut(s)	149, 249, 350, 678
DpnII	GATC	4 cut(s)	147, 247, 348, 676
EaeI	YGGCCR	2 cut(s)	420, 486
Eam1104I	CTCTTC	4 cut(s)	168, 177, 185, 526
EarI	CTCTTC	4 cut(s)	168, 177, 185, 526
Eco130I	CCWWGG	3 cut(s)	19, 41, 73
Eco47III	AGCGCT	1 cut(s)	114
Eco57I	CTGAAG	1 cut(s)	209
EcoRII	CCWGG	2 cut(s)	488, 637
EcoT14I	CCWWGG	3 cut(s)	19, 41, 73
ErhI	CCWWGG	3 cut(s)	19, 41, 73
FaeI	CATG	6 cut(s)	23, 77, 172, 443, 632, 677
FalI	AAGNNNNNCTT	2 cut(s)	452, 484
FaqI	GGGAC	1 cut(s)	340
FatI	CATG	6 cut(s)	19, 73, 168, 439, 628, 673
FauNDI	CATATG	1 cut(s)	103
Fnu4HI	GCNGC	4 cut(s)	423, 510, 619, 626
FokI	GGATG	4 cut(s)	24, 137, 325, 384
Fsp4HI	GCNGC	4 cut(s)	423, 510, 619, 626
GlaI	GCGC	1 cut(s)	114
GluI	GCNGC	4 cut(s)	423, 510, 619, 626
HaeII	RGCGCY	1 cut(s)	116
HaeIII	GGCC	2 cut(s)	422, 488
HapII	CCGG	2 cut(s)	346, 390
HhaI	GCGC	1 cut(s)	115
Hin1II	CATG	6 cut(s)	23, 77, 172, 443, 632, 677
Hin6I	GCGC	1 cut(s)	113
HinP1I	GCGC	1 cut(s)	113
HindIII	AAGCTT	2 cut(s)	79, 229
HinfI	GANTC	2 cut(s)	224, 604
HpaII	CCGG	2 cut(s)	346, 390
HphI	GGTGA	1 cut(s)	491
Hpy188I	TCNGA	2 cut(s)	305, 548
Hpy188III	TCNNGA	3 cut(s)	346, 674, 683
HpyCH4III	ACNGT	2 cut(s)	271, 670
HpyCH4V	TGCA	8 cut(s)	92, 292, 404, 431, 439, 509, 520, 628
HpyF10VI	GCNNNNNNNGC	5 cut(s)	78, 228, 428, 580, 634
HpyF3I	CTNAG	2 cut(s)	125, 575
Hsp92II	CATG	6 cut(s)	23, 77, 172, 443, 632, 677
HspAI	GCGC	1 cut(s)	113
Kpn2I	TCCGGA	1 cut(s)	345
Kzo9I	GATC	4 cut(s)	147, 247, 348, 676
LguI	GCTCTTC	1 cut(s)	177
LmnI	GCTCC	2 cut(s)	21, 219
Lsp1109I	GCAGC	2 cut(s)	521, 612
LweI	GCATC	3 cut(s)	418, 496, 624
MaeIII	GTNAC	2 cut(s)	164, 235
MalI	GATC	4 cut(s)	149, 249, 350, 678
MboI	GATC	4 cut(s)	147, 247, 348, 676
MboII	GAAGA	9 cut(s)	107, 185, 194, 202, 242, 420, 540, 543, 671
MfeI	CAATTG	1 cut(s)	432
MflI	RGATCY	1 cut(s)	247
MlsI	TGGCCA	1 cut(s)	488
MluCI	AATT	5 cut(s)	198, 257, 432, 642, 654
MluNI	TGGCCA	1 cut(s)	488
MmeI	TCCRAC	1 cut(s)	543
MnlI	CCTC	2 cut(s)	353, 527
Mox20I	TGGCCA	1 cut(s)	488
MroI	TCCGGA	1 cut(s)	345
MscI	TGGCCA	1 cut(s)	488
MseI	TTAA	1 cut(s)	645
Msp20I	TGGCCA	1 cut(s)	488
MspI	CCGG	2 cut(s)	346, 390
MspR9I	CCNGG	3 cut(s)	390, 490, 639
MunI	CAATTG	1 cut(s)	432
MvaI	CCWGG	2 cut(s)	490, 639
MwoI	GCNNNNNNNGC	5 cut(s)	78, 228, 428, 580, 634
NciI	CCSGG	1 cut(s)	390
NcoI	CCATGG	2 cut(s)	19, 73
NdeI	CATATG	1 cut(s)	103
NdeII	GATC	4 cut(s)	147, 247, 348, 676
NlaIII	CATG	6 cut(s)	23, 77, 172, 443, 632, 677
NmuCI	GTSAC	1 cut(s)	164
NspI	RCATGY	2 cut(s)	443, 632
PaeI	GCATGC	1 cut(s)	632
PagI	TCATGA	1 cut(s)	673
PciSI	GCTCTTC	1 cut(s)	177
PfeI	GAWTC	2 cut(s)	224, 604
PkrI	GCNGC	4 cut(s)	424, 511, 620, 627
Psp6I	CCWGG	2 cut(s)	488, 637
PspGI	CCWGG	2 cut(s)	488, 637
PsuI	RGATCY	1 cut(s)	247
RsaI	GTAC	1 cut(s)	62
RsaNI	GTAC	1 cut(s)	61
SapI	GCTCTTC	1 cut(s)	177
SaqAI	TTAA	1 cut(s)	645
SatI	GCNGC	4 cut(s)	423, 510, 619, 626
Sau3AI	GATC	4 cut(s)	147, 247, 348, 676
ScrFI	CCNGG	3 cut(s)	390, 490, 639
SfaNI	GCATC	3 cut(s)	418, 496, 624
SphI	GCATGC	1 cut(s)	632
Sse9I	AATT	5 cut(s)	198, 257, 432, 642, 654
SsiI	CCGC	3 cut(s)	317, 423, 619
StyD4I	CCNGG	3 cut(s)	388, 488, 637
StyI	CCWWGG	3 cut(s)	19, 41, 73
TaaI	ACNGT	2 cut(s)	271, 670
TaqI	TCGA	2 cut(s)	10, 684
TasI	AATT	5 cut(s)	198, 257, 432, 642, 654
TauI	GCSGC	2 cut(s)	425, 621
TfiI	GAWTC	2 cut(s)	224, 604
Tru1I	TTAA	1 cut(s)	645
Tru9I	TTAA	1 cut(s)	645
TscAI	CASTG	1 cut(s)	274
TseFI	GTSAC	1 cut(s)	164
TseI	GCWGC	2 cut(s)	509, 625
Tsp45I	GTSAC	1 cut(s)	164
TspDTI	ATGAA	5 cut(s)	120, 191, 327, 471, 662
TspRI	CASTG	1 cut(s)	274
XapI	RAATTY	1 cut(s)	257
XceI	RCATGY	2 cut(s)	443, 632
XcmI	CCANNNNNNNNNTGG	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.