Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002257

Physical Location & Seq

Genomic Coordinates Forward (+)

39069840 .. 39073418

Gene Structure 3579 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ45522

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2127 bp

ATGTCGATGATGATTCCAAGCCTTGAAGCCTGCAAGAAGAGGAAGCGAAGGCCAAAGGTTTATGGGTTCCATTCATTTGGGGAACCCGGCTACCCGATTCTTCCACTGGGTCCATTCCGTGATAACATTCGTCTCTTTCTTCAACAATGTGCAGAGCTGGAGAGTTACAGTGTTCAGGGCATGCCCGTTTGGTGCACTCTTCTTGTTCATGACAACCGAAGCCTTGTTCTTCCTCTCTACACCATTGAAGAGAACGTCAAGACCTCCGACACCCCCTTCTGCGATTACTGCCGATGCACTGCTTCTCTGTTCTGCCATCTTCAGCTTACTTCTCAGCTTCCTGGTTTGGACATGGCATGTTGTTATTGTTGTTTAGGTTGGAGTAACCATTTTGTATCGAAGAGAAAGTACCACATGATAATTCCAATGGATGATGACTGGAATAAGCCTTTGGATGATGGTATCTTGGATGTTTCAACCCATCTCTTACATGGGTTAATTCACTGTAATGGGTTTGCTCATTTGCTATGCATCAATGGACTTGAAGGTGGTTCTAAGCATCTTTGTGGCAGAGAGCTCATGGATCTTTGGGATCGGATCTGCATTAATCTTCGAACCAGGAAAATCACAGTCGAAGATGTCTCAAAGAAACGGTCCATGGAACTTCGCCTGCTCCATGGAGTTGCTTATGGGCATCCTTGGTTTGGTAGATGGGGTTACAAATTTTGCCATGGAAGCTTTGGCGTCAAAGAGCACATTTATGAAAGAGCACTTGAGATACTCAGCTCATTAAAACTTGAAAAGATCATCCAAGATTTTAGTGACTTGGACCAGTATGAAGAGCTGAAGAAAATTGTTCGTTACTACAGATATTTGAGTGAAACACAGTTAGTTACTATCAAAGATCTTCTCAGATTTATGCTTACTATCAAGGCTTGCTTTCCTGCACAGAGAAACTCGCTACTTCCTACTGCAAAACCTGCAGATGTGATTGAGAAAGCAAAACCTGCAACCAGAGAATCCGTTAAGATCAAGCCTCTGATAAAGCAAAAGTCTTCAAAGTATAGGAAGTTTGCTACTGTTGTTTCTCACATGGATAGCAGATGGCCTGCCAGAAGACTAGAGTTTGCAGCAGATGTGATTGTGAATGCGCTGAAAGAAAAGAAAGAGAAGGACTTTAGAAATGGTGGGATGGCCCGGCAAGATGTGCGAGATGCAGCTAGGTTGCATATTGGAGATACAGGTTTGTTGGATTATGTGCTGAAATCACTGAACAATGTGGTTGTTGGGAATCAGGTTGTCTGTCGTTCAGTGAATCCAACCACTCGGATTTTGGAATATACGGTTCATGATCTTAATGATGGGGATAAAGTGTCTGAACCTGAGAAAGAGATGCTTCCCCTACCCCCTCCACCAGCTGCTCCAGTTCCTGGAATTGATGTTTACAGTGATGTTCTTTATTTGTATGAGCATGTACTGTTGGGATATCCAGAATCTGGATTGCTAGAGTTGGCTACACAAGCAGTATTGGACACTAAGCACTTTGTAAAGGAATGTCCATTTAGGGATGAGAAAGAGCAGTTACTGACATTGTTTTGCCAAATCTTGCCAAGTTTGACTGATAAGGAAATTGAATTCAAGAGGGAGTTGCCTCCAGGTGAGATAGTGGTAATGCCACTGGATGCAACTGTTGGAGAGCTAAAGCAGGAAGCTGAGAGTGCAATGAGGGATACATATTGTATCACAGAACAGTTTGTGGTGATGGAAATCAAAGGCTTGGAGGAATCAGATGATATGGAAGTGCTTTCTGGAGCAGTTCAATCGGGTACAGAGGTTGGAGTGAGAGGGAGTGGGATAGATTTAGACACACCGTTGAGGTACCAAGGGGGATCGGACACATGGATGGTGAGATGTGAATGTGGGGCTACAGATGATGATGGTGAAAGGATGGTGGCCTGTGATATATGCGAAGTGTGGCAGCATACACGCTGCTGTGGAATGGAGGATGCTGATGAAGTCCCACGTCTGTTCATTTGCTCAACATGTTACGTTTCACTTGTTCCGCCTAAAACTGAACCTGCAGCTAAATTTGACTGTTCCACTGCGTTTCTGGAGTGGAGACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000212 GO:0000226 GO:0000228 GO:0000280 GO:0000785 GO:0000790 GO:0000791 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005719 GO:0006323 GO:0006355 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007059 GO:0007060 GO:0007140 GO:0007275 GO:0007276 GO:0008134 GO:0008150 GO:0009555 GO:0009889 GO:0009987 GO:0010032 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0030154 GO:0030261 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0033613 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044703 GO:0045132 GO:0048229 GO:0048232 GO:0048235 GO:0048285 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0051321 GO:0051704 GO:0055046 GO:0060255 GO:0065007 GO:0070013 GO:0070192 GO:0071103 GO:0071840 GO:0080090 GO:0097159 GO:0098813 GO:0140013 GO:1901363 GO:1903046 GO:1903506 GO:1990188 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD

Protein Analysis

708

Amino Acids

80.5

Weight (kDa)

5.86

Isoelectric Point (pI)

43.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_plant_repro	PF25874	368 - 451	1.2e-34	Winged helix-turn-helix domain in plant reproductive proteins
Ubiquitin_At1g33420	PF25565	526 - 618	5.1e-30	At1g33420-like, ubiquitin-like domain
PHD	PF00628	638 - 682	6.1e-06	PHD-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002257)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66170
fragaria_vesca	FvH4_1g29990 FvH4_1g29990 FvH4_1g29990 FvH4_6g02390
malus_domestica	MD09G1267100.v1.1 MD17G1254900.v1.1 MD17G1255100.v1.1 MD17G1260200.v1.1
prunus_persica	Prupe.3G164800_v2.0.a1
pyrus_communis	pycom12401g00150 pycom461g00270
rosa_chinensis	RchiOBHm_Chr3g0450161 RchiOBHm_Chr3g0492331
rosa_laevigata	RLG00000022781 RLG00000022872 RLG00000022874 RLG00000022875 RLG00000025750
rosa_multiflora	Rmu_co8200976.1_g000001 Rmu_sc0003156.1_g000026 Rmu_sc0010184.1_g000005 Rmu_sc0010184.1_g000015 Rmu_sc0020297.1_g000001
rosa_roxburghii	Rroxscaffold_3G00226630 Rroxscaffold_6G00392410 Rroxscaffold_6G00427920
rosa_rugosa	Rorug02G0625900 Rorug03G0253300
rosa_samantha	Rh2AG397300 Rh2CG383900 Rh3AG025300 Rh3AG303200 Rh3BG025900 Rh3BG339200 Rh3BG339300 Rh3CG024800 Rh3CG336400 Rh3DG025900 Rh3DG327500 Rh3DG338500
rosa_wichuraiana	Rw3G002030 Rw3G026750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	988, 1015, 2086
Acc65I	GGTACC	1 cut(s)	1878
AccB1I	GGYRCC	1 cut(s)	1878
AccB7I	CCANNNNNTGG	2 cut(s)	1430, 1496
AciI	CCGC	1 cut(s)	2063
AclWI	GGATC	4 cut(s)	591, 600, 605, 1897
AcsI	RAATTY	3 cut(s)	722, 1634, 2087
AcuI	CTGAAG	2 cut(s)	305, 866
AcyI	GRCGYC	1 cut(s)	744
AfaI	GTAC	4 cut(s)	410, 1476, 1828, 1880
AfiI	CCNNNNNNNGG	3 cut(s)	704, 1430, 1496
AflIII	ACRYGT	1 cut(s)	2042
AjiI	CACGTC	1 cut(s)	2024
AjnI	CCWGG	4 cut(s)	340, 617, 1429, 1654
AjuI	GAANNNNNNNTTGG	2 cut(s)	434, 466
Alw21I	GWGCWC	4 cut(s)	197, 579, 756, 772
Alw26I	GTCTC	3 cut(s)	137, 646, 2113
Alw44I	GTGCAC	1 cut(s)	193
AlwI	GGATC	4 cut(s)	591, 600, 605, 1897
AlwNI	CAGNNNCTG	3 cut(s)	1430, 1496, 1585
AoxI	GGCC	4 cut(s)	50, 1106, 1194, 1953
ApaLI	GTGCAC	1 cut(s)	193
ApeKI	GCWGC	6 cut(s)	1130, 1217, 1418, 1978, 1989, 2081
ApoI	RAATTY	3 cut(s)	722, 1634, 2087
ArsI	GACNNNNNNTTYG	2 cut(s)	638, 670
AseI	ATTAAT	1 cut(s)	606
Asp718I	GGTACC	1 cut(s)	1878
AspLEI	GCGC	1 cut(s)	1153
AspS9I	GGNCC	4 cut(s)	110, 654, 829, 1195
AsuC2I	CCSGG	2 cut(s)	87, 1198
AsuHPI	GGTGA	4 cut(s)	1670, 1771, 1918, 1952
AsuII	TTCGAA	1 cut(s)	613
AvaII	GGWCC	3 cut(s)	110, 654, 829
BaeGI	GKGCMC	1 cut(s)	197
BaeI	ACNNNNGTAYC	2 cut(s)	1818, 1851
BanI	GGYRCC	1 cut(s)	1878
BanII	GRGCYC	1 cut(s)	579
BarI	GAAGNNNNNNTAC	2 cut(s)	392, 424
BbsI	GAAGAC	2 cut(s)	1047, 1123
Bbv12I	GWGCWC	4 cut(s)	197, 579, 756, 772
BbvI	GCAGC	6 cut(s)	1142, 1229, 1405, 1976, 1990, 2093
BcgI	CGANNNNNNTGC	2 cut(s)	1803, 1837
BciT130I	CCWGG	4 cut(s)	342, 619, 1431, 1656
BciVI	GTATCC	1 cut(s)	1723
BcnI	CCSGG	2 cut(s)	87, 1198
BcoDI	GTCTC	3 cut(s)	137, 646, 2113
BfaI	CTAG	3 cut(s)	1121, 1221, 1505
BfmI	CTRYAG	4 cut(s)	865, 981, 1926, 2079
BfuAI	ACCTGC	3 cut(s)	988, 1015, 2086
BfuI	GTATCC	1 cut(s)	1723
BglII	AGATCT	1 cut(s)	904
BisI	GCNGC	6 cut(s)	1131, 1218, 1419, 1979, 1990, 2082
BlsI	GCNGC	6 cut(s)	1132, 1219, 1420, 1980, 1991, 2083
Bme1390I	CCNGG	6 cut(s)	87, 342, 619, 1198, 1431, 1656
Bme18I	GGWCC	3 cut(s)	110, 654, 829
BmgBI	CACGTC	1 cut(s)	2024
BmgT120I	GGNCC	4 cut(s)	110, 654, 829, 1195
BmiI	GGNNCC	4 cut(s)	68, 84, 111, 1880
BmrFI	CCNGG	6 cut(s)	87, 342, 619, 1198, 1431, 1656
BmrI	ACTGGG	1 cut(s)	116
BmsI	GCATC	8 cut(s)	284, 540, 568, 703, 1204, 1383, 1672, 1996
BmuI	ACTGGG	1 cut(s)	116
BpiI	GAAGAC	2 cut(s)	1047, 1123
BpmI	CTGGAG	4 cut(s)	179, 1407, 1638, 1830
Bpu14I	TTCGAA	1 cut(s)	613
BpuEI	CTTGAG	1 cut(s)	794
BpuMI	CCSGG	2 cut(s)	87, 1198
BsaBI	GATNNNNATC	1 cut(s)	1766
BsaHI	GRCGYC	1 cut(s)	744
BsaJI	CCNNGG	5 cut(s)	657, 676, 698, 730, 1882
Bsc4I	CCNNNNNNNGG	3 cut(s)	704, 1430, 1496
Bse1I	ACTGG	5 cut(s)	111, 443, 832, 1424, 1683
Bse3DI	GCAATG	1 cut(s)	1728
Bse8I	GATNNNNATC	1 cut(s)	1766
BseBI	CCWGG	4 cut(s)	342, 619, 1431, 1656
BseDI	CCNNGG	5 cut(s)	657, 676, 698, 730, 1882
BseJI	GATNNNNATC	1 cut(s)	1766
BseLI	CCNNNNNNNGG	3 cut(s)	704, 1430, 1496
BseMI	GCAATG	1 cut(s)	1728
BseMII	CTCAG	5 cut(s)	347, 796, 925, 1374, 1704
BseNI	ACTGG	5 cut(s)	111, 443, 832, 1424, 1683
BseSI	GKGCMC	1 cut(s)	197
BseXI	GCAGC	6 cut(s)	1142, 1229, 1405, 1976, 1990, 2093
BsgI	GTGCAG	2 cut(s)	171, 930
BshFI	GGCC	4 cut(s)	52, 1108, 1196, 1955
BshNI	GGYRCC	1 cut(s)	1878
BsiHKAI	GWGCWC	4 cut(s)	197, 579, 756, 772
BsiSI	CCGG	2 cut(s)	87, 1198
BslFI	GGGAC	1 cut(s)	2003
BslI	CCNNNNNNNGG	3 cut(s)	704, 1430, 1496
BsmAI	GTCTC	3 cut(s)	137, 646, 2113
BsmBI	CGTCTC	1 cut(s)	137
BsmFI	GGGAC	1 cut(s)	2003
BsmI	GAATGC	1 cut(s)	1153
BsnI	GGCC	4 cut(s)	52, 1108, 1196, 1955
Bsp119I	TTCGAA	1 cut(s)	613
Bsp1286I	GDGCHC	4 cut(s)	197, 579, 756, 772
Bsp143I	GATC	8 cut(s)	583, 592, 597, 804, 904, 1029, 1351, 1889
Bsp19I	CCATGG	3 cut(s)	657, 676, 730
BspACI	CCGC	1 cut(s)	2063
BspANI	GGCC	4 cut(s)	52, 1108, 1196, 1955
BspCNI	CTCAG	5 cut(s)	346, 795, 924, 1375, 1705
BspHI	TCATGA	2 cut(s)	208, 1348
BspLI	GGNNCC	4 cut(s)	68, 84, 111, 1880
BspMAI	CTGCAG	2 cut(s)	985, 2083
BspMI	ACCTGC	3 cut(s)	988, 1015, 2086
BspPI	GGATC	4 cut(s)	591, 600, 605, 1897
BspQI	GCTCTTC	1 cut(s)	834
BspT104I	TTCGAA	1 cut(s)	613
BspT107I	GGYRCC	1 cut(s)	1878
BsrDI	GCAATG	1 cut(s)	1728
BsrI	ACTGG	5 cut(s)	111, 443, 832, 1424, 1683
BssECI	CCNNGG	5 cut(s)	657, 676, 698, 730, 1882
BssMI	GATC	8 cut(s)	583, 592, 597, 804, 904, 1029, 1351, 1889
BssNI	GRCGYC	1 cut(s)	744
BssT1I	CCWWGG	5 cut(s)	657, 676, 698, 730, 1882
Bst2UI	CCWGG	4 cut(s)	342, 619, 1431, 1656
Bst6I	CTCTTC	5 cut(s)	32, 204, 243, 395, 834
BstACI	GRCGYC	1 cut(s)	744
BstAPI	GCANNNNNTGC	3 cut(s)	980, 1007, 1207
BstBI	TTCGAA	1 cut(s)	613
BstC8I	GCNNGC	5 cut(s)	31, 182, 671, 937, 1110
BstDEI	CTNAG	7 cut(s)	333, 555, 782, 911, 1383, 1536, 1713
BstDSI	CCRYGG	3 cut(s)	657, 676, 730
BstHHI	GCGC	1 cut(s)	1153
BstKTI	GATC	8 cut(s)	586, 595, 600, 807, 907, 1032, 1354, 1892
BstMAI	GTCTC	3 cut(s)	137, 646, 2113
BstMBI	GATC	8 cut(s)	583, 592, 597, 804, 904, 1029, 1351, 1889
BstMWI	GCNNNNNNNGC	7 cut(s)	288, 735, 980, 1007, 1207, 1520, 1718
BstNI	CCWGG	4 cut(s)	342, 619, 1431, 1656
BstNSI	RCATGY	4 cut(s)	184, 360, 1475, 2046
BstSCI	CCNGG	6 cut(s)	85, 340, 617, 1196, 1429, 1654
BstSFI	CTRYAG	4 cut(s)	865, 981, 1926, 2079
BstSLI	GKGCMC	1 cut(s)	197
BstV1I	GCAGC	6 cut(s)	1142, 1229, 1405, 1976, 1990, 2093
BstV2I	GAAGAC	2 cut(s)	1047, 1123
BstX2I	RGATCY	3 cut(s)	583, 597, 904
BstXI	CCANNNNNNTGG	1 cut(s)	77
BstYI	RGATCY	3 cut(s)	583, 597, 904
BsuI	GTATCC	1 cut(s)	1723
BsuRI	GGCC	4 cut(s)	52, 1108, 1196, 1955
BtgI	CCRYGG	3 cut(s)	657, 676, 730
BtrI	CACGTC	1 cut(s)	2024
BtsI	GCAGTG	2 cut(s)	297, 2100
BtsIMutI	CAGTG	9 cut(s)	104, 175, 297, 502, 1268, 1317, 1453, 1676, 2100
BveI	ACCTGC	3 cut(s)	988, 1015, 2086
Cac8I	GCNNGC	5 cut(s)	31, 182, 671, 937, 1110
CaiI	CAGNNNCTG	3 cut(s)	1430, 1496, 1585
CciI	TCATGA	2 cut(s)	208, 1348
CfoI	GCGC	1 cut(s)	1153
Cfr13I	GGNCC	4 cut(s)	110, 654, 829, 1195
CseI	GACGC	1 cut(s)	733
Csp6I	GTAC	4 cut(s)	409, 1475, 1827, 1879
CviQI	GTAC	4 cut(s)	409, 1475, 1827, 1879
DdeI	CTNAG	7 cut(s)	333, 555, 782, 911, 1383, 1536, 1713
DpnI	GATC	8 cut(s)	585, 594, 599, 806, 906, 1031, 1353, 1891
DpnII	GATC	8 cut(s)	583, 592, 597, 804, 904, 1029, 1351, 1889
Eam1104I	CTCTTC	5 cut(s)	32, 204, 243, 395, 834
EarI	CTCTTC	5 cut(s)	32, 204, 243, 395, 834
EciI	GGCGGA	1 cut(s)	2052
Ecl136II	GAGCTC	1 cut(s)	577
Eco130I	CCWWGG	5 cut(s)	657, 676, 698, 730, 1882
Eco24I	GRGCYC	1 cut(s)	579
Eco32I	GATATC	1 cut(s)	1487
Eco47I	GGWCC	3 cut(s)	110, 654, 829
Eco53kI	GAGCTC	1 cut(s)	577
Eco57I	CTGAAG	2 cut(s)	305, 866
EcoICRI	GAGCTC	1 cut(s)	577
EcoRI	GAATTC	1 cut(s)	1634
EcoRII	CCWGG	4 cut(s)	340, 617, 1429, 1654
EcoRV	GATATC	1 cut(s)	1487
EcoT14I	CCWWGG	5 cut(s)	657, 676, 698, 730, 1882
EcoT22I	ATGCAT	1 cut(s)	533
EcoT38I	GRGCYC	1 cut(s)	579
ErhI	CCWWGG	5 cut(s)	657, 676, 698, 730, 1882
Esp3I	CGTCTC	1 cut(s)	137
FalI	AAGNNNNNCTT	4 cut(s)	923, 955, 1380, 1412
FaqI	GGGAC	1 cut(s)	2003
Fnu4HI	GCNGC	6 cut(s)	1131, 1218, 1419, 1979, 1990, 2082
FriOI	GRGCYC	1 cut(s)	579
Fsp4HI	GCNGC	6 cut(s)	1131, 1218, 1419, 1979, 1990, 2082
FspBI	CTAG	3 cut(s)	1121, 1221, 1505
GlaI	GCGC	1 cut(s)	1152
GluI	GCNGC	6 cut(s)	1131, 1218, 1419, 1979, 1990, 2082
GsuI	CTGGAG	4 cut(s)	179, 1407, 1638, 1830
HaeIII	GGCC	4 cut(s)	52, 1108, 1196, 1955
HapII	CCGG	2 cut(s)	87, 1198
HgaI	GACGC	1 cut(s)	733
HhaI	GCGC	1 cut(s)	1153
Hin1I	GRCGYC	1 cut(s)	744
Hin6I	GCGC	1 cut(s)	1151
HinP1I	GCGC	1 cut(s)	1151
HindIII	AAGCTT	1 cut(s)	736
HinfI	GANTC	7 cut(s)	13, 97, 1019, 1291, 1315, 1493, 1784
HpaII	CCGG	2 cut(s)	87, 1198
HphI	GGTGA	4 cut(s)	1670, 1771, 1918, 1952
Hpy166II	GTNNAC	2 cut(s)	195, 1444
Hpy188I	TCNGA	8 cut(s)	268, 597, 914, 1041, 1329, 1378, 1789, 1894
Hpy188III	TCNNGA	8 cut(s)	209, 259, 1349, 1490, 1497, 1639, 1809, 2111
Hpy8I	GTNNAC	2 cut(s)	195, 1444
HpyAV	CCTTC	4 cut(s)	42, 286, 539, 1165
HpyCH4IV	ACGT	3 cut(s)	255, 2023, 2049
HpyF10VI	GCNNNNNNNGC	7 cut(s)	288, 735, 980, 1007, 1207, 1520, 1718
HpyF3I	CTNAG	7 cut(s)	333, 555, 782, 911, 1383, 1536, 1713
HpySE526I	ACGT	3 cut(s)	255, 2023, 2049
Hsp92I	GRCGYC	1 cut(s)	744
HspAI	GCGC	1 cut(s)	1151
KpnI	GGTACC	1 cut(s)	1882
Kzo9I	GATC	8 cut(s)	583, 592, 597, 804, 904, 1029, 1351, 1889
LguI	GCTCTTC	1 cut(s)	834
LmnI	GCTCC	3 cut(s)	678, 1426, 1811
Lsp1109I	GCAGC	6 cut(s)	1142, 1229, 1405, 1976, 1990, 2093
LweI	GCATC	8 cut(s)	284, 540, 568, 703, 1204, 1383, 1672, 1996
MaeI	CTAG	3 cut(s)	1121, 1221, 1505
MaeII	ACGT	3 cut(s)	255, 2023, 2049
MaeIII	GTNAC	8 cut(s)	164, 383, 716, 821, 860, 892, 1581, 2045
MalI	GATC	8 cut(s)	585, 594, 599, 806, 906, 1031, 1353, 1891
MboI	GATC	8 cut(s)	583, 592, 597, 804, 904, 1029, 1351, 1889
MflI	RGATCY	3 cut(s)	583, 597, 904
MhlI	GDGCHC	4 cut(s)	197, 579, 756, 772
MluCI	AATT	8 cut(s)	420, 498, 722, 852, 1434, 1629, 1634, 2087
MmeI	TCCRAC	6 cut(s)	291, 359, 1230, 1343, 1672, 1816
Mph1103I	ATGCAT	1 cut(s)	533
MseI	TTAA	5 cut(s)	497, 606, 791, 1026, 1356
MslI	CAYNNNNRTG	4 cut(s)	507, 564, 759, 1901
MspA1I	CMGCKG	1 cut(s)	1418
MspI	CCGG	2 cut(s)	87, 1198
MspR9I	CCNGG	6 cut(s)	87, 342, 619, 1198, 1431, 1656
Mva1269I	GAATGC	1 cut(s)	1153
MvaI	CCWGG	4 cut(s)	342, 619, 1431, 1656
MwoI	GCNNNNNNNGC	7 cut(s)	288, 735, 980, 1007, 1207, 1520, 1718
NciI	CCSGG	2 cut(s)	87, 1198
NcoI	CCATGG	3 cut(s)	657, 676, 730
NdeII	GATC	8 cut(s)	583, 592, 597, 804, 904, 1029, 1351, 1889
NlaIV	GGNNCC	4 cut(s)	68, 84, 111, 1880
NmuCI	GTSAC	1 cut(s)	821
NsiI	ATGCAT	1 cut(s)	533
NspI	RCATGY	4 cut(s)	184, 360, 1475, 2046
NspV	TTCGAA	1 cut(s)	613
PaeI	GCATGC	1 cut(s)	184
PagI	TCATGA	2 cut(s)	208, 1348
PciI	ACATGT	1 cut(s)	2042
PciSI	GCTCTTC	1 cut(s)	834
PctI	GAATGC	1 cut(s)	1153
PfeI	GAWTC	7 cut(s)	13, 97, 1019, 1291, 1315, 1493, 1784
PflMI	CCANNNNNTGG	2 cut(s)	1430, 1496
PfoI	TCCNGGA	1 cut(s)	1429
PkrI	GCNGC	6 cut(s)	1132, 1219, 1420, 1980, 1991, 2083
PscI	ACATGT	1 cut(s)	2042
PshBI	ATTAAT	1 cut(s)	606
Psp124BI	GAGCTC	1 cut(s)	579
Psp6I	CCWGG	4 cut(s)	340, 617, 1429, 1654
PspGI	CCWGG	4 cut(s)	340, 617, 1429, 1654
PspN4I	GGNNCC	4 cut(s)	68, 84, 111, 1880
PspPI	GGNCC	4 cut(s)	110, 654, 829, 1195
PstI	CTGCAG	2 cut(s)	985, 2083
PstNI	CAGNNNCTG	3 cut(s)	1430, 1496, 1585
PsuI	RGATCY	3 cut(s)	583, 597, 904
PvuII	CAGCTG	1 cut(s)	1418
RsaI	GTAC	4 cut(s)	410, 1476, 1828, 1880
RsaNI	GTAC	4 cut(s)	409, 1475, 1827, 1879
RseI	CAYNNNNRTG	4 cut(s)	507, 564, 759, 1901
SacI	GAGCTC	1 cut(s)	579
SapI	GCTCTTC	1 cut(s)	834
SaqAI	TTAA	5 cut(s)	497, 606, 791, 1026, 1356
SatI	GCNGC	6 cut(s)	1131, 1218, 1419, 1979, 1990, 2082
Sau3AI	GATC	8 cut(s)	583, 592, 597, 804, 904, 1029, 1351, 1889
Sau96I	GGNCC	4 cut(s)	110, 654, 829, 1195
ScrFI	CCNGG	6 cut(s)	87, 342, 619, 1198, 1431, 1656
SduI	GDGCHC	4 cut(s)	197, 579, 756, 772
SfaNI	GCATC	8 cut(s)	284, 540, 568, 703, 1204, 1383, 1672, 1996
SfcI	CTRYAG	4 cut(s)	865, 981, 1926, 2079
SfuI	TTCGAA	1 cut(s)	613
SinI	GGWCC	3 cut(s)	110, 654, 829
SmiMI	CAYNNNNRTG	4 cut(s)	507, 564, 759, 1901
SmlI	CTYRAG	1 cut(s)	773
SmoI	CTYRAG	1 cut(s)	773
SphI	GCATGC	1 cut(s)	184
Sse9I	AATT	8 cut(s)	420, 498, 722, 852, 1434, 1629, 1634, 2087
SsiI	CCGC	1 cut(s)	2063
SspMI	CTAG	3 cut(s)	1121, 1221, 1505
SstI	GAGCTC	1 cut(s)	579
StyD4I	CCNGG	6 cut(s)	85, 340, 617, 1196, 1429, 1654
StyI	CCWWGG	5 cut(s)	657, 676, 698, 730, 1882
TaiI	ACGT	3 cut(s)	258, 2026, 2052
TaqI	TCGA	4 cut(s)	5, 398, 613, 633
TasI	AATT	8 cut(s)	420, 498, 722, 852, 1434, 1629, 1634, 2087
TatI	WGTACW	1 cut(s)	1474
TfiI	GAWTC	7 cut(s)	13, 97, 1019, 1291, 1315, 1493, 1784
Tru1I	TTAA	5 cut(s)	497, 606, 791, 1026, 1356
Tru9I	TTAA	5 cut(s)	497, 606, 791, 1026, 1356
TscAI	CASTG	9 cut(s)	111, 175, 304, 509, 1275, 1317, 1453, 1683, 2107
TseFI	GTSAC	1 cut(s)	821
TseI	GCWGC	6 cut(s)	1130, 1217, 1418, 1978, 1989, 2081
Tsp45I	GTSAC	1 cut(s)	821
TspDTI	ATGAA	7 cut(s)	63, 197, 777, 852, 1337, 2020, 2028
TspGWI	ACGGA	2 cut(s)	107, 1012
TspRI	CASTG	9 cut(s)	111, 175, 304, 509, 1275, 1317, 1453, 1683, 2107
Van91I	CCANNNNNTGG	2 cut(s)	1430, 1496
VneI	GTGCAC	1 cut(s)	193
VpaK11BI	GGWCC	3 cut(s)	110, 654, 829
VspI	ATTAAT	1 cut(s)	606
XapI	RAATTY	3 cut(s)	722, 1634, 2087
XceI	RCATGY	4 cut(s)	184, 360, 1475, 2046
XcmI	CCANNNNNNNNNTGG	4 cut(s)	488, 737, 1330, 2107
XspI	CTAG	3 cut(s)	1121, 1221, 1505
Zsp2I	ATGCAT	1 cut(s)	533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.