Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0002257

Physical Location & Seq

Genomic Coordinates Reverse (-)

52282894 .. 52288434

Gene Structure 5541 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG383900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1776 bp

ATGACATGTTGTTATTGTTGTTTAGGTTGGAGTAACCATTTTGTATCGAAGAGAAAGTACCACATGATAATTCCAATGGATGATGACTGGAATAAGCCTTTGGATGATGGTATCTTGGATATTTCAACCCATCTCTTACATGGGTTAATTCACTGTAATGGGTTTGCTCATTTGCTATGCATCAATGGACTTGAAGGTGGTTCTAAGCATCTTTGTGGCAGAGAGCTCATGGATCTTTGGGATCGGATCTGCATTAATCTTCGAACCCGGAAAATCACAGTCGAAGATGTCTCAAAGAAACGGTCCATGGAACTTCGCCTGCTCCATGGAGTTGCCTATGGGCATCCTTTTTTTGGTAGATGGGGTTACAAATTTTGCCATGGAAGCTTTGGCGTCAAAGAGCACATTTATGAAAGAGCACTTGAGATTCTCAGCTCATTAAAACTTGAAAAGATCATCCAAGATTTTAGTGACATGGACCAGTATGAAGAGCTGAAGAAAATTGTTCGTTACTACAGATATTTGAGTGAAACACAGTTAGTTACTATCAAAGATCTTCTCAGATTTATGCTTACTGTTAAGGCTTGCTTTCCTGCACAGAGAAACTCGCTACTTCCTACTGCAAAACCTGCAGATGTGATTGAGAACGCAAAACCTGCAACCAGAGAATCCGTCAAGATCAAGCCTCTGATAAAGGAAAAGTCTTCAAAGTATAGGAAGTTTGCTACTGTTGTTTCTCACATGGATAGCAGATGGCCTGCCAGAAGACTAGAGTTTGCAGCAGATGTGATTGTGAATGCGCTGAAAGAAAAGAAAGAGAAGGACTTTAGAAATGGTGGGATGGCCCGGCAAGATGTGCGAGATGCAGCTAGGTTGCATATTGGAGATACAGGTTTGTTGGATTATGTGCTGAAATCACTGAACAATGTGGTTGTTGGGAATCAGGTTGTCTGCCGTTCAGTGAATCCAACCACTCGGATTTTGGAATATATGGTTCATGATCTTAATGATGGGGATAAAGTGTCTGAACCTGAGAAAGAGATGCTTCCCCTACCCCCTCCACCAGCAGCTCCAGTTCCTGGAATTGATGTTTACAGTGATGTTCTTTATTTGTATGAGCATGTACTGTTGGGATATCCAGAATCTGGATTGTTAGAGTTGGCTACACAAGCAGTATTGGACACTAAGCACTTTGTAAAGGAATGTCCATTTAGGGATGAGAAAGAGCAGTTACTGACATTGTTTTGCCAAATCTTGCCAAGTTCGACTGATAAGGAAATTGAATTCAAGAGGGAGTTGCCTCCAGGTGAGATAGTGGTAATGCCACTGGATGCAACTGTTGGAGAGCTAAAGCAGGAAGCTGAGAGTGCAATGAGGGATACATATTGCATTACAGAACAGTTTGTGGTGATGGAAATCAAAGGCTTGGAGGAATCAGATGATATGGAAGTGCTTTCTGGAGCAGTTCAATCGGGGACAGAGGTTGGAGTGAGAGGGAGTGGGATAGATTTAGACACACCGTTGAGGTACCAAGGGGGATCGGACACATGGATGGTGAGATGTGAATGTGGGGCTACAGATGATGATGGTGAAAGGATGGTGGCCTGTGATATATGCGAAGTGTGGCAGCATACATGCTGCTGTGGAATGGAGGATTCTGATGAAGTCCCACGTCTGTTCATTTGCTCAACATGTTACGTTTCACTTGTTCCGCCTAAAACTGAACCTGCAGCTAAATTTGACTGTTCGACTGCGTTTCTGGAGTGGAGACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000212 GO:0000226 GO:0000228 GO:0000280 GO:0000785 GO:0000790 GO:0000791 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005719 GO:0006323 GO:0006355 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007059 GO:0007060 GO:0007140 GO:0007275 GO:0007276 GO:0008134 GO:0008150 GO:0009555 GO:0009889 GO:0009987 GO:0010032 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0030154 GO:0030261 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0033613 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044703 GO:0045132 GO:0048229 GO:0048232 GO:0048235 GO:0048285 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0051321 GO:0051704 GO:0055046 GO:0060255 GO:0065007 GO:0070013 GO:0070192 GO:0071103 GO:0071840 GO:0080090 GO:0097159 GO:0098813 GO:0140013 GO:1901363 GO:1903046 GO:1903506 GO:1990188 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD

Protein Analysis

591

Amino Acids

67.07

Weight (kDa)

5.5

Isoelectric Point (pI)

37.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_plant_repro	PF25874	251 - 334	2.2e-34	Winged helix-turn-helix domain in plant reproductive proteins
Ubiquitin_At1g33420	PF25565	409 - 501	1.4e-30	At1g33420-like, ubiquitin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002257)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66170
fragaria_vesca	FvH4_1g29990 FvH4_1g29990 FvH4_1g29990 FvH4_6g02390
malus_domestica	MD09G1267100.v1.1 MD17G1254900.v1.1 MD17G1255100.v1.1 MD17G1260200.v1.1
prunus_persica	Prupe.3G164800_v2.0.a1
pyrus_communis	pycom12401g00150 pycom461g00270
rosa_chinensis	RchiOBHm_Chr3g0450161 RchiOBHm_Chr3g0492331
rosa_laevigata	RLG00000022781 RLG00000022872 RLG00000022874 RLG00000022875 RLG00000025750
rosa_multiflora	Rmu_co8200976.1_g000001 Rmu_sc0003156.1_g000026 Rmu_sc0010184.1_g000005 Rmu_sc0010184.1_g000015 Rmu_sc0020297.1_g000001
rosa_roxburghii	Rroxscaffold_3G00226630 Rroxscaffold_6G00392410 Rroxscaffold_6G00427920
rosa_rugosa	Rorug02G0625900 Rorug03G0253300
rosa_samantha	Rh2AG397300 Rh2CG383900 Rh3AG025300 Rh3AG303200 Rh3BG025900 Rh3BG339200 Rh3BG339300 Rh3CG024800 Rh3CG336400 Rh3DG025900 Rh3DG327500 Rh3DG338500
rosa_wichuraiana	Rw3G002030 Rw3G026750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	637, 664, 1735
Acc65I	GGTACC	1 cut(s)	1527
AccB1I	GGYRCC	1 cut(s)	1527
AccB7I	CCANNNNNTGG	2 cut(s)	1079, 1145
AciI	CCGC	1 cut(s)	1712
AclWI	GGATC	4 cut(s)	240, 249, 254, 1546
AcsI	RAATTY	3 cut(s)	371, 1283, 1736
AcuI	CTGAAG	1 cut(s)	515
AcyI	GRCGYC	1 cut(s)	393
AfaI	GTAC	3 cut(s)	59, 1125, 1529
AfiI	CCNNNNNNNGG	3 cut(s)	353, 1079, 1145
AflIII	ACRYGT	2 cut(s)	5, 1691
AgsI	TTSAA	7 cut(s)	126, 194, 449, 708, 1283, 1288, 1469
AjiI	CACGTC	1 cut(s)	1673
AjnI	CCWGG	2 cut(s)	1078, 1303
AjuI	GAANNNNNNNTTGG	2 cut(s)	83, 115
AluBI	AGCT	9 cut(s)	226, 387, 435, 493, 869, 1070, 1348, 1361, 1733
AluI	AGCT	9 cut(s)	226, 387, 435, 493, 869, 1070, 1348, 1361, 1733
Alw21I	GWGCWC	3 cut(s)	228, 405, 421
Alw26I	GTCTC	2 cut(s)	295, 1762
AlwI	GGATC	4 cut(s)	240, 249, 254, 1546
AlwNI	CAGNNNCTG	3 cut(s)	1079, 1145, 1234
AoxI	GGCC	3 cut(s)	755, 843, 1602
ApeKI	GCWGC	6 cut(s)	779, 866, 1067, 1627, 1638, 1730
ApoI	RAATTY	3 cut(s)	371, 1283, 1736
ArsI	GACNNNNNNTTYG	2 cut(s)	287, 319
AseI	ATTAAT	1 cut(s)	255
Asp718I	GGTACC	1 cut(s)	1527
AspLEI	GCGC	1 cut(s)	802
AspS9I	GGNCC	3 cut(s)	303, 478, 844
AsuC2I	CCSGG	2 cut(s)	268, 847
AsuHPI	GGTGA	4 cut(s)	1319, 1420, 1567, 1601
AsuII	TTCGAA	1 cut(s)	262
AvaII	GGWCC	2 cut(s)	303, 478
BanI	GGYRCC	1 cut(s)	1527
BanII	GRGCYC	1 cut(s)	228
BarI	GAAGNNNNNNTAC	2 cut(s)	41, 73
BbsI	GAAGAC	2 cut(s)	696, 772
Bbv12I	GWGCWC	3 cut(s)	228, 405, 421
BbvI	GCAGC	6 cut(s)	791, 878, 1079, 1625, 1639, 1742
BceAI	ACGGC	1 cut(s)	939
BcgI	CGANNNNNNTGC	2 cut(s)	1452, 1486
BciT130I	CCWGG	2 cut(s)	1080, 1305
BciVI	GTATCC	1 cut(s)	1372
BcnI	CCSGG	2 cut(s)	268, 847
BcoDI	GTCTC	2 cut(s)	295, 1762
BfaI	CTAG	2 cut(s)	770, 870
BfmI	CTRYAG	4 cut(s)	514, 630, 1575, 1728
BfuAI	ACCTGC	3 cut(s)	637, 664, 1735
BfuI	GTATCC	1 cut(s)	1372
BglII	AGATCT	1 cut(s)	553
BisI	GCNGC	6 cut(s)	780, 867, 1068, 1628, 1639, 1731
BlsI	GCNGC	6 cut(s)	781, 868, 1069, 1629, 1640, 1732
Bme1390I	CCNGG	4 cut(s)	268, 847, 1080, 1305
Bme18I	GGWCC	2 cut(s)	303, 478
BmgBI	CACGTC	1 cut(s)	1673
BmgT120I	GGNCC	3 cut(s)	303, 478, 844
BmiI	GGNNCC	1 cut(s)	1529
BmrFI	CCNGG	4 cut(s)	268, 847, 1080, 1305
BmsI	GCATC	6 cut(s)	189, 217, 352, 853, 1032, 1321
BpiI	GAAGAC	2 cut(s)	696, 772
BpmI	CTGGAG	3 cut(s)	1056, 1287, 1479
Bpu14I	TTCGAA	1 cut(s)	262
BpuEI	CTTGAG	1 cut(s)	443
BpuMI	CCSGG	2 cut(s)	268, 847
BsaBI	GATNNNNATC	1 cut(s)	1415
BsaHI	GRCGYC	1 cut(s)	393
BsaJI	CCNNGG	4 cut(s)	306, 325, 379, 1531
Bsc4I	CCNNNNNNNGG	3 cut(s)	353, 1079, 1145
Bse1I	ACTGG	4 cut(s)	92, 481, 1073, 1332
Bse3DI	GCAATG	1 cut(s)	1377
Bse8I	GATNNNNATC	1 cut(s)	1415
BseBI	CCWGG	2 cut(s)	1080, 1305
BseDI	CCNNGG	4 cut(s)	306, 325, 379, 1531
BseGI	GGATG	9 cut(s)	85, 109, 343, 456, 846, 1222, 1336, 1557, 1602
BseJI	GATNNNNATC	1 cut(s)	1415
BseLI	CCNNNNNNNGG	3 cut(s)	353, 1079, 1145
BseMI	GCAATG	1 cut(s)	1377
BseMII	CTCAG	4 cut(s)	445, 574, 1023, 1353
BseNI	ACTGG	4 cut(s)	92, 481, 1073, 1332
BseXI	GCAGC	6 cut(s)	791, 878, 1079, 1625, 1639, 1742
BsgI	GTGCAG	1 cut(s)	579
BshFI	GGCC	3 cut(s)	757, 845, 1604
BshNI	GGYRCC	1 cut(s)	1527
BsiHKAI	GWGCWC	3 cut(s)	228, 405, 421
BsiSI	CCGG	2 cut(s)	268, 847
BslFI	GGGAC	2 cut(s)	1489, 1652
BslI	CCNNNNNNNGG	3 cut(s)	353, 1079, 1145
BsmAI	GTCTC	2 cut(s)	295, 1762
BsmFI	GGGAC	2 cut(s)	1489, 1652
BsmI	GAATGC	1 cut(s)	802
BsnI	GGCC	3 cut(s)	757, 845, 1604
Bsp119I	TTCGAA	1 cut(s)	262
Bsp1286I	GDGCHC	3 cut(s)	228, 405, 421
Bsp143I	GATC	8 cut(s)	232, 241, 246, 453, 553, 678, 1000, 1538
Bsp19I	CCATGG	3 cut(s)	306, 325, 379
BspACI	CCGC	1 cut(s)	1712
BspANI	GGCC	3 cut(s)	757, 845, 1604
BspCNI	CTCAG	4 cut(s)	444, 573, 1024, 1354
BspHI	TCATGA	1 cut(s)	997
BspLI	GGNNCC	1 cut(s)	1529
BspMAI	CTGCAG	2 cut(s)	634, 1732
BspMI	ACCTGC	3 cut(s)	637, 664, 1735
BspPI	GGATC	4 cut(s)	240, 249, 254, 1546
BspQI	GCTCTTC	1 cut(s)	483
BspT104I	TTCGAA	1 cut(s)	262
BspT107I	GGYRCC	1 cut(s)	1527
BsrDI	GCAATG	1 cut(s)	1377
BsrI	ACTGG	4 cut(s)	92, 481, 1073, 1332
BssECI	CCNNGG	4 cut(s)	306, 325, 379, 1531
BssMI	GATC	8 cut(s)	232, 241, 246, 453, 553, 678, 1000, 1538
BssNI	GRCGYC	1 cut(s)	393
BssT1I	CCWWGG	4 cut(s)	306, 325, 379, 1531
Bst2UI	CCWGG	2 cut(s)	1080, 1305
Bst6I	CTCTTC	2 cut(s)	44, 483
BstACI	GRCGYC	1 cut(s)	393
BstAPI	GCANNNNNTGC	3 cut(s)	629, 656, 856
BstBI	TTCGAA	1 cut(s)	262
BstC8I	GCNNGC	3 cut(s)	320, 586, 759
BstDEI	CTNAG	6 cut(s)	204, 431, 560, 1032, 1185, 1362
BstDSI	CCRYGG	3 cut(s)	306, 325, 379
BstF5I	GGATG	9 cut(s)	85, 109, 343, 456, 846, 1222, 1336, 1557, 1602
BstHHI	GCGC	1 cut(s)	802
BstKTI	GATC	8 cut(s)	235, 244, 249, 456, 556, 681, 1003, 1541
BstMAI	GTCTC	2 cut(s)	295, 1762
BstMBI	GATC	8 cut(s)	232, 241, 246, 453, 553, 678, 1000, 1538
BstMWI	GCNNNNNNNGC	6 cut(s)	384, 629, 656, 856, 1169, 1367
BstNI	CCWGG	2 cut(s)	1080, 1305
BstNSI	RCATGY	4 cut(s)	9, 1124, 1638, 1695
BstSCI	CCNGG	4 cut(s)	266, 845, 1078, 1303
BstSFI	CTRYAG	4 cut(s)	514, 630, 1575, 1728
BstV1I	GCAGC	6 cut(s)	791, 878, 1079, 1625, 1639, 1742
BstV2I	GAAGAC	2 cut(s)	696, 772
BstX2I	RGATCY	3 cut(s)	232, 246, 553
BstYI	RGATCY	3 cut(s)	232, 246, 553
BsuI	GTATCC	1 cut(s)	1372
BsuRI	GGCC	3 cut(s)	757, 845, 1604
BtgI	CCRYGG	3 cut(s)	306, 325, 379
BtrI	CACGTC	1 cut(s)	1673
BtsCI	GGATG	9 cut(s)	85, 109, 343, 456, 846, 1222, 1336, 1557, 1602
BtsIMutI	CAGTG	5 cut(s)	151, 917, 966, 1102, 1325
BveI	ACCTGC	3 cut(s)	637, 664, 1735
Cac8I	GCNNGC	3 cut(s)	320, 586, 759
CaiI	CAGNNNCTG	3 cut(s)	1079, 1145, 1234
CciI	TCATGA	1 cut(s)	997
CfoI	GCGC	1 cut(s)	802
Cfr13I	GGNCC	3 cut(s)	303, 478, 844
CseI	GACGC	1 cut(s)	382
Csp6I	GTAC	3 cut(s)	58, 1124, 1528
CviQI	GTAC	3 cut(s)	58, 1124, 1528
DdeI	CTNAG	6 cut(s)	204, 431, 560, 1032, 1185, 1362
DpnI	GATC	8 cut(s)	234, 243, 248, 455, 555, 680, 1002, 1540
DpnII	GATC	8 cut(s)	232, 241, 246, 453, 553, 678, 1000, 1538
Eam1104I	CTCTTC	2 cut(s)	44, 483
EarI	CTCTTC	2 cut(s)	44, 483
EciI	GGCGGA	1 cut(s)	1701
Ecl136II	GAGCTC	1 cut(s)	226
Eco130I	CCWWGG	4 cut(s)	306, 325, 379, 1531
Eco24I	GRGCYC	1 cut(s)	228
Eco32I	GATATC	1 cut(s)	1136
Eco47I	GGWCC	2 cut(s)	303, 478
Eco53kI	GAGCTC	1 cut(s)	226
Eco57I	CTGAAG	1 cut(s)	515
EcoICRI	GAGCTC	1 cut(s)	226
EcoRI	GAATTC	1 cut(s)	1283
EcoRII	CCWGG	2 cut(s)	1078, 1303
EcoRV	GATATC	1 cut(s)	1136
EcoT14I	CCWWGG	4 cut(s)	306, 325, 379, 1531
EcoT22I	ATGCAT	1 cut(s)	182
EcoT38I	GRGCYC	1 cut(s)	228
ErhI	CCWWGG	4 cut(s)	306, 325, 379, 1531
FalI	AAGNNNNNCTT	4 cut(s)	572, 604, 1029, 1061
FaqI	GGGAC	2 cut(s)	1489, 1652
Fnu4HI	GCNGC	6 cut(s)	780, 867, 1068, 1628, 1639, 1731
FokI	GGATG	9 cut(s)	92, 116, 330, 443, 853, 1229, 1343, 1564, 1609
FriOI	GRGCYC	1 cut(s)	228
Fsp4HI	GCNGC	6 cut(s)	780, 867, 1068, 1628, 1639, 1731
FspBI	CTAG	2 cut(s)	770, 870
GlaI	GCGC	1 cut(s)	801
GluI	GCNGC	6 cut(s)	780, 867, 1068, 1628, 1639, 1731
GsuI	CTGGAG	3 cut(s)	1056, 1287, 1479
HaeIII	GGCC	3 cut(s)	757, 845, 1604
HapII	CCGG	2 cut(s)	268, 847
HgaI	GACGC	1 cut(s)	382
HhaI	GCGC	1 cut(s)	802
Hin1I	GRCGYC	1 cut(s)	393
Hin6I	GCGC	1 cut(s)	800
HinP1I	GCGC	1 cut(s)	800
HindIII	AAGCTT	1 cut(s)	385
HinfI	GANTC	7 cut(s)	427, 668, 940, 964, 1142, 1433, 1655
HpaII	CCGG	2 cut(s)	268, 847
HphI	GGTGA	4 cut(s)	1319, 1420, 1567, 1601
Hpy166II	GTNNAC	1 cut(s)	1093
Hpy188I	TCNGA	8 cut(s)	246, 563, 690, 978, 1027, 1438, 1543, 1660
Hpy188III	TCNNGA	7 cut(s)	676, 998, 1139, 1146, 1288, 1458, 1760
Hpy8I	GTNNAC	1 cut(s)	1093
HpyAV	CCTTC	2 cut(s)	188, 814
HpyCH4IV	ACGT	2 cut(s)	1672, 1698
HpyF10VI	GCNNNNNNNGC	6 cut(s)	384, 629, 656, 856, 1169, 1367
HpyF3I	CTNAG	6 cut(s)	204, 431, 560, 1032, 1185, 1362
HpySE526I	ACGT	2 cut(s)	1672, 1698
Hsp92I	GRCGYC	1 cut(s)	393
HspAI	GCGC	1 cut(s)	800
KpnI	GGTACC	1 cut(s)	1531
Kzo9I	GATC	8 cut(s)	232, 241, 246, 453, 553, 678, 1000, 1538
LguI	GCTCTTC	1 cut(s)	483
LmnI	GCTCC	3 cut(s)	327, 1075, 1460
Lsp1109I	GCAGC	6 cut(s)	791, 878, 1079, 1625, 1639, 1742
LweI	GCATC	6 cut(s)	189, 217, 352, 853, 1032, 1321
MaeI	CTAG	2 cut(s)	770, 870
MaeII	ACGT	2 cut(s)	1672, 1698
MaeIII	GTNAC	7 cut(s)	32, 365, 470, 509, 541, 1230, 1694
MalI	GATC	8 cut(s)	234, 243, 248, 455, 555, 680, 1002, 1540
MboI	GATC	8 cut(s)	232, 241, 246, 453, 553, 678, 1000, 1538
MboII	GAAGA	8 cut(s)	61, 251, 296, 500, 508, 548, 696, 777
MflI	RGATCY	3 cut(s)	232, 246, 553
MhlI	GDGCHC	3 cut(s)	228, 405, 421
MluCI	AATT	8 cut(s)	69, 147, 371, 501, 1083, 1278, 1283, 1736
MmeI	TCCRAC	5 cut(s)	8, 879, 992, 1321, 1465
Mph1103I	ATGCAT	1 cut(s)	182
MseI	TTAA	5 cut(s)	146, 255, 440, 579, 1005
MslI	CAYNNNNRTG	4 cut(s)	156, 213, 408, 1550
MspI	CCGG	2 cut(s)	268, 847
MspR9I	CCNGG	4 cut(s)	268, 847, 1080, 1305
Mva1269I	GAATGC	1 cut(s)	802
MvaI	CCWGG	2 cut(s)	1080, 1305
MwoI	GCNNNNNNNGC	6 cut(s)	384, 629, 656, 856, 1169, 1367
NciI	CCSGG	2 cut(s)	268, 847
NcoI	CCATGG	3 cut(s)	306, 325, 379
NdeII	GATC	8 cut(s)	232, 241, 246, 453, 553, 678, 1000, 1538
NlaIV	GGNNCC	1 cut(s)	1529
NmuCI	GTSAC	1 cut(s)	470
NsiI	ATGCAT	1 cut(s)	182
NspI	RCATGY	4 cut(s)	9, 1124, 1638, 1695
NspV	TTCGAA	1 cut(s)	262
PagI	TCATGA	1 cut(s)	997
PciI	ACATGT	2 cut(s)	5, 1691
PciSI	GCTCTTC	1 cut(s)	483
PctI	GAATGC	1 cut(s)	802
PfeI	GAWTC	7 cut(s)	427, 668, 940, 964, 1142, 1433, 1655
PflMI	CCANNNNNTGG	2 cut(s)	1079, 1145
PfoI	TCCNGGA	1 cut(s)	1078
PkrI	GCNGC	6 cut(s)	781, 868, 1069, 1629, 1640, 1732
PscI	ACATGT	2 cut(s)	5, 1691
PshBI	ATTAAT	1 cut(s)	255
Psp124BI	GAGCTC	1 cut(s)	228
Psp6I	CCWGG	2 cut(s)	1078, 1303
PspGI	CCWGG	2 cut(s)	1078, 1303
PspN4I	GGNNCC	1 cut(s)	1529
PspPI	GGNCC	3 cut(s)	303, 478, 844
PstI	CTGCAG	2 cut(s)	634, 1732
PstNI	CAGNNNCTG	3 cut(s)	1079, 1145, 1234
PsuI	RGATCY	3 cut(s)	232, 246, 553
RsaI	GTAC	3 cut(s)	59, 1125, 1529
RsaNI	GTAC	3 cut(s)	58, 1124, 1528
RseI	CAYNNNNRTG	4 cut(s)	156, 213, 408, 1550
SacI	GAGCTC	1 cut(s)	228
SapI	GCTCTTC	1 cut(s)	483
SaqAI	TTAA	5 cut(s)	146, 255, 440, 579, 1005
SatI	GCNGC	6 cut(s)	780, 867, 1068, 1628, 1639, 1731
Sau3AI	GATC	8 cut(s)	232, 241, 246, 453, 553, 678, 1000, 1538
Sau96I	GGNCC	3 cut(s)	303, 478, 844
ScrFI	CCNGG	4 cut(s)	268, 847, 1080, 1305
SduI	GDGCHC	3 cut(s)	228, 405, 421
SfaNI	GCATC	6 cut(s)	189, 217, 352, 853, 1032, 1321
SfcI	CTRYAG	4 cut(s)	514, 630, 1575, 1728
SfuI	TTCGAA	1 cut(s)	262
SinI	GGWCC	2 cut(s)	303, 478
SmiMI	CAYNNNNRTG	4 cut(s)	156, 213, 408, 1550
SmlI	CTYRAG	1 cut(s)	422
SmoI	CTYRAG	1 cut(s)	422
Sse9I	AATT	8 cut(s)	69, 147, 371, 501, 1083, 1278, 1283, 1736
SsiI	CCGC	1 cut(s)	1712
SspMI	CTAG	2 cut(s)	770, 870
SstI	GAGCTC	1 cut(s)	228
StyD4I	CCNGG	4 cut(s)	266, 845, 1078, 1303
StyI	CCWWGG	4 cut(s)	306, 325, 379, 1531
TaiI	ACGT	2 cut(s)	1675, 1701
TaqI	TCGA	5 cut(s)	47, 262, 282, 1265, 1748
TasI	AATT	8 cut(s)	69, 147, 371, 501, 1083, 1278, 1283, 1736
TatI	WGTACW	1 cut(s)	1123
TfiI	GAWTC	7 cut(s)	427, 668, 940, 964, 1142, 1433, 1655
Tru1I	TTAA	5 cut(s)	146, 255, 440, 579, 1005
Tru9I	TTAA	5 cut(s)	146, 255, 440, 579, 1005
TscAI	CASTG	5 cut(s)	158, 924, 966, 1102, 1332
TseFI	GTSAC	1 cut(s)	470
TseI	GCWGC	6 cut(s)	779, 866, 1067, 1627, 1638, 1730
Tsp45I	GTSAC	1 cut(s)	470
TspDTI	ATGAA	5 cut(s)	426, 501, 986, 1669, 1677
TspGWI	ACGGA	1 cut(s)	661
TspRI	CASTG	5 cut(s)	158, 924, 966, 1102, 1332
Van91I	CCANNNNNTGG	2 cut(s)	1079, 1145
VpaK11BI	GGWCC	2 cut(s)	303, 478
VspI	ATTAAT	1 cut(s)	255
XapI	RAATTY	3 cut(s)	371, 1283, 1736
XceI	RCATGY	4 cut(s)	9, 1124, 1638, 1695
XcmI	CCANNNNNNNNNTGG	3 cut(s)	137, 386, 979
XspI	CTAG	2 cut(s)	770, 870
Zsp2I	ATGCAT	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.