Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0002257

Physical Location & Seq

Genomic Coordinates Reverse (-)

31073696 .. 31074667

Gene Structure 972 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1254900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGAATAATGTGATAGTTGGGAATCACATCGTGTGCTGTGCAGTGAACCCAGCAACTCAGGTTTTGGGGTACACAGTGATCTTGCAGATGGGGTTAAGGTCTTGGAACCTGAGAAAGAGAGTTGCTCAGTCTTTTCAATCAGCAACTCTAGTTCCTGGAGTTGATGTTTACAATGATGTGCTTTATCTATATGAGCACGTGCTGTTGGGATACCCATACCCGGAATCAGAGCTAGTAGATTTGGCTACTCAAGCAGTATTAGATGCCAAGCAATTCGTGAAGGAATGTTCATTTAGGGATGATGAAGAGCAGTTGTTGACATTCTTTTGCCAACTCTTGCCCAGTTCGACTGATAAGGAAATCGAATTCAAGAGGGGGTTGCCGCCTGGTGAAGTAGTAGTTATGCCACAGCATTCAACAATTAGAGAGCTAAAGCAAGCAGCTGAGAGTGCACTGAGAGATACTTATTGTATCATAGAACGGTTTGTGGTCATGGGAATTAAAGGCTTGGATGAAATGGTAGTACTTTTTGGAGTAGCTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000212 GO:0000226 GO:0000228 GO:0000280 GO:0000785 GO:0000790 GO:0000791 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005719 GO:0006323 GO:0006355 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007059 GO:0007060 GO:0007140 GO:0007275 GO:0007276 GO:0008134 GO:0008150 GO:0009555 GO:0009889 GO:0009987 GO:0010032 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0030154 GO:0030261 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0033613 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044703 GO:0045132 GO:0048229 GO:0048232 GO:0048235 GO:0048285 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0051321 GO:0051704 GO:0055046 GO:0060255 GO:0065007 GO:0070013 GO:0070192 GO:0071103 GO:0071840 GO:0080090 GO:0097159 GO:0098813 GO:0140013 GO:1901363 GO:1903046 GO:1903506 GO:1990188 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD

Protein Analysis

182

Amino Acids

20.35

Weight (kDa)

5.07

Isoelectric Point (pI)

47.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ubiquitin_At1g33420	PF25565	103 - 173	9.2e-22	At1g33420-like, ubiquitin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002257)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66170
fragaria_vesca	FvH4_1g29990 FvH4_1g29990 FvH4_1g29990 FvH4_6g02390
malus_domestica	MD09G1267100.v1.1 MD17G1254900.v1.1 MD17G1255100.v1.1 MD17G1260200.v1.1
prunus_persica	Prupe.3G164800_v2.0.a1
pyrus_communis	pycom12401g00150 pycom461g00270
rosa_chinensis	RchiOBHm_Chr3g0450161 RchiOBHm_Chr3g0492331
rosa_laevigata	RLG00000022781 RLG00000022872 RLG00000022874 RLG00000022875 RLG00000025750
rosa_multiflora	Rmu_co8200976.1_g000001 Rmu_sc0003156.1_g000026 Rmu_sc0010184.1_g000005 Rmu_sc0010184.1_g000015 Rmu_sc0020297.1_g000001
rosa_roxburghii	Rroxscaffold_3G00226630 Rroxscaffold_6G00392410 Rroxscaffold_6G00427920
rosa_rugosa	Rorug02G0625900 Rorug03G0253300
rosa_samantha	Rh2AG397300 Rh2CG383900 Rh3AG025300 Rh3AG303200 Rh3BG025900 Rh3BG339200 Rh3BG339300 Rh3CG024800 Rh3CG336400 Rh3DG025900 Rh3DG327500 Rh3DG338500
rosa_wichuraiana	Rw3G002030 Rw3G026750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	383
AcsI	RAATTY	1 cut(s)	365
AcvI	CACGTG	1 cut(s)	199
AdeI	CACNNNGTG	1 cut(s)	31
AfaI	GTAC	2 cut(s)	71, 525
AfiI	CCNNNNNNNGG	1 cut(s)	220
AgsI	TTSAA	3 cut(s)	137, 370, 417
AjnI	CCWGG	2 cut(s)	154, 385
AluBI	AGCT	4 cut(s)	232, 430, 443, 539
AluI	AGCT	4 cut(s)	232, 430, 443, 539
Alw21I	GWGCWC	2 cut(s)	198, 454
Alw44I	GTGCAC	1 cut(s)	450
ApaLI	GTGCAC	1 cut(s)	450
ApeKI	GCWGC	1 cut(s)	440
ApoI	RAATTY	1 cut(s)	365
AsuC2I	CCSGG	1 cut(s)	221
AsuHPI	GGTGA	1 cut(s)	401
BaeGI	GKGCMC	1 cut(s)	454
BbrPI	CACGTG	1 cut(s)	199
Bbv12I	GWGCWC	2 cut(s)	198, 454
BbvI	GCAGC	1 cut(s)	452
BccI	CCATC	1 cut(s)	82
BciT130I	CCWGG	2 cut(s)	156, 387
BciVI	GTATCC	1 cut(s)	203
BcnI	CCSGG	1 cut(s)	221
BfaI	CTAG	2 cut(s)	149, 233
BfuI	GTATCC	1 cut(s)	203
BisI	GCNGC	2 cut(s)	383, 441
BlsI	GCNGC	2 cut(s)	384, 442
BmcAI	AGTACT	1 cut(s)	525
Bme1390I	CCNGG	3 cut(s)	156, 221, 387
BmiI	GGNNCC	1 cut(s)	107
BmrFI	CCNGG	3 cut(s)	156, 221, 387
BmrI	ACTGGG	1 cut(s)	336
BmsI	GCATC	1 cut(s)	253
BmuI	ACTGGG	1 cut(s)	336
BplI	GAGNNNNNCTC	2 cut(s)	109, 141
BpmI	CTGGAG	1 cut(s)	177
BpuEI	CTTGAG	1 cut(s)	234
BpuMI	CCSGG	1 cut(s)	221
BsaAI	YACGTR	1 cut(s)	199
BsaXI	ACNNNNNCTCC	2 cut(s)	150, 180
Bsc4I	CCNNNNNNNGG	1 cut(s)	220
Bse1I	ACTGG	1 cut(s)	342
BseBI	CCWGG	2 cut(s)	156, 387
BseGI	GGATG	2 cut(s)	304, 517
BseLI	CCNNNNNNNGG	1 cut(s)	220
BseMII	CTCAG	5 cut(s)	71, 101, 140, 435, 446
BseNI	ACTGG	1 cut(s)	342
BseSI	GKGCMC	1 cut(s)	454
BseXI	GCAGC	1 cut(s)	452
BseYI	CCCAGC	1 cut(s)	49
BsgI	GTGCAG	1 cut(s)	60
BsiHKAI	GWGCWC	2 cut(s)	198, 454
BsiSI	CCGG	1 cut(s)	221
BslI	CCNNNNNNNGG	1 cut(s)	220
BsmI	GAATGC	1 cut(s)	412
Bsp1286I	GDGCHC	2 cut(s)	198, 454
Bsp143I	GATC	1 cut(s)	78
BspACI	CCGC	1 cut(s)	383
BspCNI	CTCAG	5 cut(s)	70, 102, 139, 436, 447
BspLI	GGNNCC	1 cut(s)	107
BspQI	GCTCTTC	1 cut(s)	300
BsrI	ACTGG	1 cut(s)	342
BssMI	GATC	1 cut(s)	78
Bst2UI	CCWGG	2 cut(s)	156, 387
Bst4CI	ACNGT	2 cut(s)	76, 483
Bst6I	CTCTTC	1 cut(s)	300
BstBAI	YACGTR	1 cut(s)	199
BstC8I	GCNNGC	1 cut(s)	438
BstDEI	CTNAG	5 cut(s)	57, 110, 126, 444, 455
BstF5I	GGATG	2 cut(s)	304, 517
BstKTI	GATC	1 cut(s)	81
BstMBI	GATC	1 cut(s)	78
BstMWI	GCNNNNNNNGC	2 cut(s)	251, 449
BstNI	CCWGG	2 cut(s)	156, 387
BstSCI	CCNGG	3 cut(s)	154, 219, 385
BstSLI	GKGCMC	1 cut(s)	454
BstV1I	GCAGC	1 cut(s)	452
BsuI	GTATCC	1 cut(s)	203
BtsCI	GGATG	2 cut(s)	304, 517
BtsI	GCAGTG	1 cut(s)	48
BtsIMutI	CAGTG	3 cut(s)	48, 81, 452
Cac8I	GCNNGC	1 cut(s)	438
Csp6I	GTAC	2 cut(s)	70, 524
CviAII	CATG	1 cut(s)	493
CviJI	RGCY	6 cut(s)	232, 245, 430, 443, 507, 539
CviKI_1	RGCY	6 cut(s)	232, 245, 430, 443, 507, 539
CviQI	GTAC	2 cut(s)	70, 524
DdeI	CTNAG	5 cut(s)	57, 110, 126, 444, 455
DpnI	GATC	1 cut(s)	80
DpnII	GATC	1 cut(s)	78
DraIII	CACNNNGTG	1 cut(s)	31
Eam1104I	CTCTTC	1 cut(s)	300
EarI	CTCTTC	1 cut(s)	300
Eco72I	CACGTG	1 cut(s)	199
EcoRI	GAATTC	1 cut(s)	365
EcoRII	CCWGG	2 cut(s)	154, 385
FaeI	CATG	1 cut(s)	496
FaiI	YATR	6 cut(s)	190, 192, 217, 404, 476, 494
FatI	CATG	1 cut(s)	492
Fnu4HI	GCNGC	2 cut(s)	383, 441
FokI	GGATG	2 cut(s)	311, 524
Fsp4HI	GCNGC	2 cut(s)	383, 441
FspBI	CTAG	2 cut(s)	149, 233
GluI	GCNGC	2 cut(s)	383, 441
GsaI	CCCAGC	1 cut(s)	53
GsuI	CTGGAG	1 cut(s)	177
HapII	CCGG	1 cut(s)	221
Hin1II	CATG	1 cut(s)	496
HincII	GTYRAC	1 cut(s)	318
HindII	GTYRAC	1 cut(s)	318
HinfI	GANTC	2 cut(s)	22, 224
HpaII	CCGG	1 cut(s)	221
HphI	GGTGA	1 cut(s)	401
Hpy166II	GTNNAC	5 cut(s)	46, 72, 169, 318, 452
Hpy188I	TCNGA	1 cut(s)	229
Hpy188III	TCNNGA	2 cut(s)	277, 370
Hpy8I	GTNNAC	5 cut(s)	46, 72, 169, 318, 452
HpyAV	CCTTC	1 cut(s)	274
HpyCH4III	ACNGT	2 cut(s)	76, 483
HpyCH4IV	ACGT	1 cut(s)	198
HpyCH4V	TGCA	3 cut(s)	41, 85, 452
HpyF10VI	GCNNNNNNNGC	2 cut(s)	251, 449
HpyF3I	CTNAG	5 cut(s)	57, 110, 126, 444, 455
HpySE526I	ACGT	1 cut(s)	198
Hsp92II	CATG	1 cut(s)	496
Kzo9I	GATC	1 cut(s)	78
LguI	GCTCTTC	1 cut(s)	300
LpnPI	CCDG	9 cut(s)	44, 63, 122, 141, 168, 234, 355, 372, 399
Lsp1109I	GCAGC	1 cut(s)	452
LweI	GCATC	1 cut(s)	253
MaeI	CTAG	2 cut(s)	149, 233
MaeII	ACGT	1 cut(s)	198
MalI	GATC	1 cut(s)	80
MboI	GATC	1 cut(s)	78
MboII	GAAGA	1 cut(s)	317
MhlI	GDGCHC	2 cut(s)	198, 454
MluCI	AATT	4 cut(s)	272, 365, 420, 498
MnlI	CCTC	1 cut(s)	366
MseI	TTAA	2 cut(s)	95, 501
MspA1I	CMGCKG	1 cut(s)	443
MspI	CCGG	1 cut(s)	221
MspR9I	CCNGG	3 cut(s)	156, 221, 387
Mva1269I	GAATGC	1 cut(s)	412
MvaI	CCWGG	2 cut(s)	156, 387
MwoI	GCNNNNNNNGC	2 cut(s)	251, 449
NciI	CCSGG	1 cut(s)	221
NdeII	GATC	1 cut(s)	78
NlaIII	CATG	1 cut(s)	496
NlaIV	GGNNCC	1 cut(s)	107
PciSI	GCTCTTC	1 cut(s)	300
PctI	GAATGC	1 cut(s)	412
PfeI	GAWTC	2 cut(s)	22, 224
PfoI	TCCNGGA	1 cut(s)	154
PkrI	GCNGC	2 cut(s)	384, 442
PmaCI	CACGTG	1 cut(s)	199
PmlI	CACGTG	1 cut(s)	199
Ppu21I	YACGTR	1 cut(s)	199
Psp6I	CCWGG	2 cut(s)	154, 385
PspCI	CACGTG	1 cut(s)	199
PspFI	CCCAGC	1 cut(s)	49
PspGI	CCWGG	2 cut(s)	154, 385
PspN4I	GGNNCC	1 cut(s)	107
PvuII	CAGCTG	1 cut(s)	443
RsaI	GTAC	2 cut(s)	71, 525
RsaNI	GTAC	2 cut(s)	70, 524
SapI	GCTCTTC	1 cut(s)	300
SaqAI	TTAA	2 cut(s)	95, 501
SatI	GCNGC	2 cut(s)	383, 441
Sau3AI	GATC	1 cut(s)	78
ScaI	AGTACT	1 cut(s)	525
ScrFI	CCNGG	3 cut(s)	156, 221, 387
SduI	GDGCHC	2 cut(s)	198, 454
SetI	ASST	8 cut(s)	63, 101, 111, 201, 234, 432, 445, 541
SfaNI	GCATC	1 cut(s)	253
SmlI	CTYRAG	1 cut(s)	249
SmoI	CTYRAG	1 cut(s)	249
Sse9I	AATT	4 cut(s)	272, 365, 420, 498
SsiI	CCGC	1 cut(s)	383
SspMI	CTAG	2 cut(s)	149, 233
StyD4I	CCNGG	3 cut(s)	154, 219, 385
TaaI	ACNGT	2 cut(s)	76, 483
TaiI	ACGT	1 cut(s)	201
TaqI	TCGA	2 cut(s)	347, 363
TasI	AATT	4 cut(s)	272, 365, 420, 498
TatI	WGTACW	1 cut(s)	523
TauI	GCSGC	1 cut(s)	385
TfiI	GAWTC	2 cut(s)	22, 224
Tru1I	TTAA	2 cut(s)	95, 501
Tru9I	TTAA	2 cut(s)	95, 501
TscAI	CASTG	3 cut(s)	48, 81, 459
TseI	GCWGC	1 cut(s)	440
TspDTI	ATGAA	4 cut(s)	17, 279, 318, 528
TspRI	CASTG	3 cut(s)	48, 81, 459
VneI	GTGCAC	1 cut(s)	450
XapI	RAATTY	1 cut(s)	365
XspI	CTAG	2 cut(s)	149, 233
ZrmI	AGTACT	1 cut(s)	525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.