Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0002257

Physical Location & Seq

Genomic Coordinates Reverse (-)

34129261 .. 34133124

Gene Structure 3864 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1267100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2103 bp

ATGTCAATCCCAATCCTTGAAGCTTGCAAGAAGAAGAAGCGAAGGCCAAAGATTTTCGGGTTGCAATCATTCTGCGATCCCGGTTGCCCGATCAGTCTCATTGGTCCGTTTCGCGATAACATTCGATTCTTCCTTCAAGAATGTGCCCAGCGTGAAGATTACACTGTGCGGGGAATGCCGATTTGGTGCACTCTTCTTGTGCACGACAATAGAAGCTTGGTTGTCCCTCTTTACACCATTGAAGAGGACGTCAAGACCTCTGAAGAACCCTTCTGTGACCAATGCCGATGCACAGGGTCAGGAATTGGTCGTTGGTGTTCCAAGATTTGCTTATATTTCTTCAATTCATTGTTTCTTTCAAGTTGGAGCAATCAATTTGTATCGAAGAGAAAGTACCATATGATAATCCCGGTGGACGATGAGTGGCATAAGCCTCTGGATAATGGTATCCTCGATCTTCCTACTCACCTCTTGCATGGCTTAATCCACTGTAATGGGTTTGCTCACTTGGTCTGCATCAATGGACTCGAAGGGGGTTCTAAGCATCTCTATGGCAGAGAGATCATGGATCTTTGGGACAGAATTTGCACTAATCTTCGAACCAGGAAAATCTCCGTTGAGGATGCCTCTAAGAAACGTTCAATGGATCTACGCCTTCTTCATGGTGTTGCTTATGGACATTCTTGGTTTGGTAGATGGGGTTACCGATTCTGCCATGGCAGTTTCGGTGTGACAGCACACAAATATGAACGAGCAATAGAGATTCTCAGCTCTTTAGCACTTGAAAGGATCCTTCAAGATTTTATTGACATGGACGGGTGCGAAGAACTGAAACAGATAATCCGCTACTACAGAAATTTGAGTGAAACAAAATTGGTCACAATTAAAGATCTTCTCCGGTTTATGCTAACTGTCAAGTCCAGTGTTCCTGGACAGAAGAAGTCATTAATGGGTCCTGCTGAAGTTTCATCTTTCATTGTAAAATCTGCAACAAAAGCGACTCTCCAGGTCAAGCCCTCAATGAAGGAAAAGTCTGCAAAGTGCAGGAAGTTCAGTACTATTCTTGCTCACATGGATAGCAGATGGCCTACAAGAAGGCTAGAGTTTGCAGCGGATGTGATTGTGAATACATTGCAAGAAAAGAAAGAGAGTGGTCATGGTGGGATGACCCGGCAAGATGTGCGAGATGCAGCTCGCTTACATATTGGAGATACTGGCCTTTTGGATTATGTGCTGAAATCAATGAATAATGTGATAGTTGGGAATCACATTGTGTGTCGTGCAGTGAACCCAGCAACTCGGATTTTGGAGTATACAGTTCATGATCTTGCAGATGGGGTTAAGGTCTCGGAACCTGGGAAAGAGATAGTTGCTCAGTCTTTTCAATCAGCAACTCTATTTCCTGGAGTTGATGTATACAATGATGTGCTTTATCTATATGAGCACGTGCTTTTGGGATACCCAGAATCAGAGCTAGTGGATTTGGCTACTCGAGCAGTATTGGACGCCAAGCACTTCGTGAAGGAATGTCCATTTAGGGATGATGAAGAGCAGTGGTTGACATTCTTTTGCCAACTCTTGCCCAGCTCGACTGATAAGGAAATCGAATTCAAGAGGGGGCTGCCGCCTGGTGAAGTAGTAGTTATGCCATTGCATGCAACAATTGGAGAGCTAAAGCGAGCAGCTGAGAGTGCACTGAGAGATACTTATTGTATCACAGAACGGTTTGTGGTCATGGGAATCGAAGGCTTGGATGAAATGGATGATATGGAAGTACTTTTTGGAGTAGCTGAATCGGGAGCAGAAGTTGGTGTGAGAGGAAGCGGGATAGATTTAGACACGCCACTGAGGTATGAAGGCGGATCAGACACTTGGATGGTGAGATGTGAGTGCGGAGCTAGAGATGATGATGGGGAGAGGATGGTGGCATGTGACATCTGCGAAGTGTGGCAACATACACGCTGCTGTGGAATTGAGGATGCTGACACTGTTCCACCGCTGTTTGTGTGCTCTGCCTGTTGTGTTTCGCTGGTGCCTCCTAGAATTGAACCCTGTCTCAGGTTCGACTGCTCTGATGCTTTTTCCATTTGCTGCAGACACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000212 GO:0000226 GO:0000228 GO:0000280 GO:0000785 GO:0000790 GO:0000791 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005719 GO:0006323 GO:0006355 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007059 GO:0007060 GO:0007140 GO:0007275 GO:0007276 GO:0008134 GO:0008150 GO:0009555 GO:0009889 GO:0009987 GO:0010032 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0030154 GO:0030261 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0033613 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044703 GO:0045132 GO:0048229 GO:0048232 GO:0048235 GO:0048285 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0051321 GO:0051704 GO:0055046 GO:0060255 GO:0065007 GO:0070013 GO:0070192 GO:0071103 GO:0071840 GO:0080090 GO:0097159 GO:0098813 GO:0140013 GO:1901363 GO:1903046 GO:1903506 GO:1990188 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD

Protein Analysis

701

Amino Acids

79.18

Weight (kDa)

6.09

Isoelectric Point (pI)

48.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_plant_repro	PF25874	361 - 442	6.2e-35	Winged helix-turn-helix domain in plant reproductive proteins
Ubiquitin_At1g33420	PF25565	517 - 609	4.3e-30	At1g33420-like, ubiquitin-like domain
PHD	PF00628	629 - 673	2.9e-06	PHD-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002257)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66170
fragaria_vesca	FvH4_1g29990 FvH4_1g29990 FvH4_1g29990 FvH4_6g02390
malus_domestica	MD09G1267100.v1.1 MD17G1254900.v1.1 MD17G1255100.v1.1 MD17G1260200.v1.1
prunus_persica	Prupe.3G164800_v2.0.a1
pyrus_communis	pycom12401g00150 pycom461g00270
rosa_chinensis	RchiOBHm_Chr3g0450161 RchiOBHm_Chr3g0492331
rosa_laevigata	RLG00000022781 RLG00000022872 RLG00000022874 RLG00000022875 RLG00000025750
rosa_multiflora	Rmu_co8200976.1_g000001 Rmu_sc0003156.1_g000026 Rmu_sc0010184.1_g000005 Rmu_sc0010184.1_g000015 Rmu_sc0020297.1_g000001
rosa_roxburghii	Rroxscaffold_3G00226630 Rroxscaffold_6G00392410 Rroxscaffold_6G00427920
rosa_rugosa	Rorug02G0625900 Rorug03G0253300
rosa_samantha	Rh2AG397300 Rh2CG383900 Rh3AG025300 Rh3AG303200 Rh3BG025900 Rh3BG339200 Rh3BG339300 Rh3CG024800 Rh3CG336400 Rh3DG025900 Rh3DG327500 Rh3DG338500
rosa_wichuraiana	Rw3G002030 Rw3G026750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	252
AccB1I	GGYRCC	1 cut(s)	2032
AccI	GTMKAC	2 cut(s)	1313, 1416
AccII	CGCG	1 cut(s)	114
AciI	CCGC	8 cut(s)	169, 844, 1112, 1625, 1824, 1860, 1893, 1997
AclI	AACGTT	1 cut(s)	637
AclWI	GGATC	6 cut(s)	71, 576, 654, 784, 797, 1870
AcsI	RAATTY	3 cut(s)	582, 856, 1607
AcuI	CTGAAG	2 cut(s)	282, 981
AcvI	CACGTG	1 cut(s)	1447
AcyI	GRCGYC	2 cut(s)	249, 1506
AdeI	CACNNNGTG	2 cut(s)	1273, 1519
AfaI	GTAC	3 cut(s)	395, 1057, 1776
AfiI	CCNNNNNNNGG	1 cut(s)	2058
AjnI	CCWGG	6 cut(s)	602, 928, 1005, 1354, 1402, 1627
AjuI	GAANNNNNNNTTGG	6 cut(s)	166, 198, 295, 327, 1764, 1796
Alw21I	GWGCWC	5 cut(s)	191, 204, 1446, 1696, 2012
Alw26I	GTCTC	3 cut(s)	101, 1351, 2060
Alw44I	GTGCAC	3 cut(s)	187, 200, 1692
AlwI	GGATC	6 cut(s)	71, 576, 654, 784, 797, 1870
AlwNI	CAGNNNCTG	1 cut(s)	2100
Ama87I	CYCGRG	1 cut(s)	1491
AoxI	GGCC	3 cut(s)	44, 1085, 1216
ApaLI	GTGCAC	3 cut(s)	187, 200, 1692
ApeKI	GCWGC	6 cut(s)	1109, 1190, 1621, 1682, 1962, 2091
ApoI	RAATTY	3 cut(s)	582, 856, 1607
AseI	ATTAAT	1 cut(s)	947
AspS9I	GGNCC	2 cut(s)	104, 953
AsuC2I	CCSGG	3 cut(s)	81, 410, 1171
AsuHPI	GGTGA	3 cut(s)	458, 1643, 1891
AsuII	TTCGAA	1 cut(s)	598
AvaI	CYCGRG	1 cut(s)	1491
AvaII	GGWCC	2 cut(s)	104, 953
BaeGI	GKGCMC	4 cut(s)	148, 191, 204, 1696
BamHI	GGATCC	1 cut(s)	789
BanI	GGYRCC	1 cut(s)	2032
BarI	GAAGNNNNNNTAC	2 cut(s)	377, 409
BbrPI	CACGTG	1 cut(s)	1447
Bbv12I	GWGCWC	5 cut(s)	191, 204, 1446, 1696, 2012
BbvI	GCAGC	6 cut(s)	1121, 1202, 1608, 1694, 1949, 2078
BccI	CCATC	6 cut(s)	690, 1077, 1328, 1870, 1904, 1915
BciT130I	CCWGG	6 cut(s)	604, 930, 1007, 1356, 1404, 1629
BciVI	GTATCC	2 cut(s)	458, 1451
BcnI	CCSGG	3 cut(s)	81, 410, 1171
BcoDI	GTCTC	3 cut(s)	101, 1351, 2060
BfaI	CTAG	4 cut(s)	1100, 1475, 1899, 2040
BfmI	CTRYAG	2 cut(s)	850, 2092
BfuI	GTATCC	2 cut(s)	458, 1451
BglII	AGATCT	1 cut(s)	889
BisI	GCNGC	7 cut(s)	1110, 1191, 1622, 1625, 1683, 1963, 2092
BlsI	GCNGC	7 cut(s)	1111, 1192, 1623, 1626, 1684, 1964, 2093
BmcAI	AGTACT	2 cut(s)	1057, 1776
Bme1390I	CCNGG	9 cut(s)	81, 410, 604, 930, 1007, 1171, 1356, 1404, 1629
Bme18I	GGWCC	2 cut(s)	104, 953
BmeT110I	CYCGRG	1 cut(s)	1491
BmgT120I	GGNCC	2 cut(s)	104, 953
BmiI	GGNNCC	4 cut(s)	791, 954, 1353, 2034
BmrFI	CCNGG	9 cut(s)	81, 410, 604, 930, 1007, 1171, 1356, 1404, 1629
BmsI	GCATC	7 cut(s)	278, 525, 553, 613, 1177, 1969, 2065
BplI	GAGNNNNNCTC	2 cut(s)	611, 643
BpmI	CTGGAG	2 cut(s)	989, 1425
Bpu14I	TTCGAA	1 cut(s)	598
BpuMI	CCSGG	3 cut(s)	81, 410, 1171
BsaAI	YACGTR	1 cut(s)	1447
BsaHI	GRCGYC	2 cut(s)	249, 1506
BsaI	GGTCTC	1 cut(s)	1351
BsaJI	CCNNGG	2 cut(s)	715, 1355
BsaWI	WCCGGW	1 cut(s)	897
BsaXI	ACNNNNNCTCC	4 cut(s)	1398, 1428, 1791, 1821
Bsc4I	CCNNNNNNNGG	1 cut(s)	2058
Bse1I	ACTGG	2 cut(s)	921, 1219
Bse3DI	GCAATG	2 cut(s)	1130, 1649
BseBI	CCWGG	6 cut(s)	604, 930, 1007, 1356, 1404, 1629
BseDI	CCNNGG	2 cut(s)	715, 1355
BseGI	GGATG	9 cut(s)	628, 1120, 1170, 1546, 1759, 1768, 1881, 1926, 1984
BseLI	CCNNNNNNNGG	1 cut(s)	2058
BseMI	GCAATG	2 cut(s)	1130, 1649
BseMII	CTCAG	6 cut(s)	781, 1388, 1677, 1688, 1838, 2071
BseNI	ACTGG	2 cut(s)	921, 1219
BseSI	GKGCMC	4 cut(s)	148, 191, 204, 1696
BseXI	GCAGC	6 cut(s)	1121, 1202, 1608, 1694, 1949, 2078
BseYI	CCCAGC	3 cut(s)	147, 1291, 1583
BsgI	GTGCAG	2 cut(s)	1063, 1302
Bsh1236I	CGCG	1 cut(s)	114
BshFI	GGCC	3 cut(s)	46, 1087, 1218
BshNI	GGYRCC	1 cut(s)	2032
BsiHKAI	GWGCWC	5 cut(s)	191, 204, 1446, 1696, 2012
BsiHKCI	CYCGRG	1 cut(s)	1491
BsiSI	CCGG	4 cut(s)	81, 410, 898, 1171
BslFI	GGGAC	2 cut(s)	209, 590
BslI	CCNNNNNNNGG	1 cut(s)	2058
BsmAI	GTCTC	3 cut(s)	101, 1351, 2060
BsmFI	GGGAC	2 cut(s)	209, 590
BsmI	GAATGC	1 cut(s)	180
BsnI	GGCC	3 cut(s)	46, 1087, 1218
Bso31I	GGTCTC	1 cut(s)	1351
BsoBI	CYCGRG	1 cut(s)	1491
Bsp119I	TTCGAA	1 cut(s)	598
Bsp1286I	GDGCHC	6 cut(s)	148, 191, 204, 1446, 1696, 2012
Bsp19I	CCATGG	1 cut(s)	715
Bsp68I	TCGCGA	1 cut(s)	114
BspACI	CCGC	8 cut(s)	169, 844, 1112, 1625, 1824, 1860, 1893, 1997
BspANI	GGCC	3 cut(s)	46, 1087, 1218
BspCNI	CTCAG	6 cut(s)	780, 1387, 1678, 1689, 1839, 2070
BspFNI	CGCG	1 cut(s)	114
BspHI	TCATGA	1 cut(s)	1321
BspLI	GGNNCC	4 cut(s)	791, 954, 1353, 2034
BspMAI	CTGCAG	1 cut(s)	2096
BspPI	GGATC	6 cut(s)	71, 576, 654, 784, 797, 1870
BspQI	GCTCTTC	1 cut(s)	1542
BspT104I	TTCGAA	1 cut(s)	598
BspT107I	GGYRCC	1 cut(s)	2032
BspTNI	GGTCTC	1 cut(s)	1351
BsrDI	GCAATG	2 cut(s)	1130, 1649
BsrI	ACTGG	2 cut(s)	921, 1219
BssECI	CCNNGG	2 cut(s)	715, 1355
BssNAI	GTATAC	2 cut(s)	1314, 1417
BssNI	GRCGYC	2 cut(s)	249, 1506
BssT1I	CCWWGG	1 cut(s)	715
Bst1107I	GTATAC	2 cut(s)	1314, 1417
Bst2UI	CCWGG	6 cut(s)	604, 930, 1007, 1356, 1404, 1629
Bst4CI	ACNGT	6 cut(s)	166, 491, 913, 1318, 1725, 1990
Bst6I	CTCTTC	4 cut(s)	198, 237, 380, 1542
BstACI	GRCGYC	2 cut(s)	249, 1506
BstAPI	GCANNNNNTGC	1 cut(s)	1180
BstBAI	YACGTR	1 cut(s)	1447
BstBI	TTCGAA	1 cut(s)	598
BstC8I	GCNNGC	4 cut(s)	25, 1195, 1656, 1680
BstDEI	CTNAG	8 cut(s)	540, 630, 767, 1374, 1686, 1697, 1847, 2057
BstDSI	CCRYGG	1 cut(s)	715
BstEII	GGTNACC	1 cut(s)	701
BstENI	CCTNNNNNAGG	1 cut(s)	2056
BstF5I	GGATG	9 cut(s)	628, 1120, 1170, 1546, 1759, 1768, 1881, 1926, 1984
BstFNI	CGCG	1 cut(s)	114
BstMAI	GTCTC	3 cut(s)	101, 1351, 2060
BstMWI	GCNNNNNNNGC	5 cut(s)	175, 995, 1180, 1493, 1691
BstNI	CCWGG	6 cut(s)	604, 930, 1007, 1356, 1404, 1629
BstNSI	RCATGY	2 cut(s)	1658, 1932
BstPI	GGTNACC	1 cut(s)	701
BstSCI	CCNGG	9 cut(s)	79, 408, 602, 928, 1005, 1169, 1354, 1402, 1627
BstSFI	CTRYAG	2 cut(s)	850, 2092
BstSLI	GKGCMC	4 cut(s)	148, 191, 204, 1696
BstUI	CGCG	1 cut(s)	114
BstV1I	GCAGC	6 cut(s)	1121, 1202, 1608, 1694, 1949, 2078
BstX2I	RGATCY	4 cut(s)	568, 646, 789, 889
BstXI	CCANNNNNNTGG	1 cut(s)	494
BstYI	RGATCY	4 cut(s)	568, 646, 789, 889
BstZ17I	GTATAC	2 cut(s)	1314, 1417
BsuI	GTATCC	2 cut(s)	458, 1451
BsuRI	GGCC	3 cut(s)	46, 1087, 1218
BtgI	CCRYGG	1 cut(s)	715
BtsCI	GGATG	9 cut(s)	628, 1120, 1170, 1546, 1759, 1768, 1881, 1926, 1984
BtsI	GCAGTG	2 cut(s)	1290, 1559
BtsIMutI	CAGTG	9 cut(s)	162, 487, 928, 1290, 1559, 1694, 1844, 1986, 2098
BtuMI	TCGCGA	1 cut(s)	114
Cac8I	GCNNGC	4 cut(s)	25, 1195, 1656, 1680
CaiI	CAGNNNCTG	1 cut(s)	2100
CciI	TCATGA	1 cut(s)	1321
Cfr13I	GGNCC	2 cut(s)	104, 953
CseI	GACGC	1 cut(s)	1514
Csp6I	GTAC	3 cut(s)	394, 1056, 1775
CviQI	GTAC	3 cut(s)	394, 1056, 1775
DdeI	CTNAG	8 cut(s)	540, 630, 767, 1374, 1686, 1697, 1847, 2057
DraIII	CACNNNGTG	2 cut(s)	1273, 1519
Eam1104I	CTCTTC	4 cut(s)	198, 237, 380, 1542
EarI	CTCTTC	4 cut(s)	198, 237, 380, 1542
EciI	GGCGGA	1 cut(s)	1875
Eco130I	CCWWGG	1 cut(s)	715
Eco31I	GGTCTC	1 cut(s)	1351
Eco47I	GGWCC	2 cut(s)	104, 953
Eco57I	CTGAAG	2 cut(s)	282, 981
Eco72I	CACGTG	1 cut(s)	1447
Eco88I	CYCGRG	1 cut(s)	1491
Eco91I	GGTNACC	1 cut(s)	701
EcoNI	CCTNNNNNAGG	1 cut(s)	2056
EcoO109I	RGGNCCY	1 cut(s)	953
EcoO65I	GGTNACC	1 cut(s)	701
EcoRI	GAATTC	1 cut(s)	1607
EcoRII	CCWGG	6 cut(s)	602, 928, 1005, 1354, 1402, 1627
EcoT14I	CCWWGG	1 cut(s)	715
ErhI	CCWWGG	1 cut(s)	715
FalI	AAGNNNNNCTT	2 cut(s)	314, 346
FaqI	GGGAC	2 cut(s)	209, 590
FauI	CCCGC	2 cut(s)	162, 1817
FauNDI	CATATG	1 cut(s)	399
FblI	GTMKAC	2 cut(s)	1313, 1416
Fnu4HI	GCNGC	7 cut(s)	1110, 1191, 1622, 1625, 1683, 1963, 2092
FokI	GGATG	9 cut(s)	635, 1127, 1177, 1553, 1766, 1775, 1888, 1933, 1991
Fsp4HI	GCNGC	7 cut(s)	1110, 1191, 1622, 1625, 1683, 1963, 2092
FspBI	CTAG	4 cut(s)	1100, 1475, 1899, 2040
GluI	GCNGC	7 cut(s)	1110, 1191, 1622, 1625, 1683, 1963, 2092
GsaI	CCCAGC	3 cut(s)	151, 1295, 1587
GsuI	CTGGAG	2 cut(s)	989, 1425
HaeIII	GGCC	3 cut(s)	46, 1087, 1218
HapII	CCGG	4 cut(s)	81, 410, 898, 1171
HgaI	GACGC	1 cut(s)	1514
Hin1I	GRCGYC	2 cut(s)	249, 1506
HincII	GTYRAC	1 cut(s)	1560
HindII	GTYRAC	1 cut(s)	1560
HindIII	AAGCTT	2 cut(s)	21, 214
HinfI	GANTC	9 cut(s)	126, 525, 708, 763, 1000, 1264, 1466, 1740, 1793
HpaII	CCGG	4 cut(s)	81, 410, 898, 1171
HphI	GGTGA	3 cut(s)	458, 1643, 1891
Hpy166II	GTNNAC	8 cut(s)	189, 202, 415, 1288, 1314, 1417, 1560, 1694
Hpy188I	TCNGA	6 cut(s)	262, 1302, 1351, 1471, 1867, 2074
Hpy8I	GTNNAC	8 cut(s)	189, 202, 415, 1288, 1314, 1417, 1560, 1694
HpyCH4III	ACNGT	6 cut(s)	166, 491, 913, 1318, 1725, 1990
HpyCH4IV	ACGT	3 cut(s)	249, 637, 1446
HpyF10VI	GCNNNNNNNGC	5 cut(s)	175, 995, 1180, 1493, 1691
HpyF3I	CTNAG	8 cut(s)	540, 630, 767, 1374, 1686, 1697, 1847, 2057
HpySE526I	ACGT	3 cut(s)	249, 637, 1446
Hsp92I	GRCGYC	2 cut(s)	249, 1506
LguI	GCTCTTC	1 cut(s)	1542
LmnI	GCTCC	3 cut(s)	366, 1799, 1895
Lsp1109I	GCAGC	6 cut(s)	1121, 1202, 1608, 1694, 1949, 2078
LweI	GCATC	7 cut(s)	278, 525, 553, 613, 1177, 1969, 2065
MaeI	CTAG	4 cut(s)	1100, 1475, 1899, 2040
MaeII	ACGT	3 cut(s)	249, 637, 1446
MaeIII	GTNAC	5 cut(s)	275, 701, 730, 877, 1931
MfeI	CAATTG	1 cut(s)	1662
MflI	RGATCY	4 cut(s)	568, 646, 789, 889
MhlI	GDGCHC	6 cut(s)	148, 191, 204, 1446, 1696, 2012
MlyI	GAGTC	2 cut(s)	519, 994
MmeI	TCCRAC	1 cut(s)	344
MseI	TTAA	4 cut(s)	482, 885, 947, 1341
MslI	CAYNNNNRTG	4 cut(s)	492, 549, 744, 1874
MspA1I	CMGCKG	3 cut(s)	1112, 1685, 1999
MspI	CCGG	4 cut(s)	81, 410, 898, 1171
MspR9I	CCNGG	9 cut(s)	81, 410, 604, 930, 1007, 1171, 1356, 1404, 1629
MunI	CAATTG	1 cut(s)	1662
Mva1269I	GAATGC	1 cut(s)	180
MvaI	CCWGG	6 cut(s)	604, 930, 1007, 1356, 1404, 1629
MvnI	CGCG	1 cut(s)	114
MwoI	GCNNNNNNNGC	5 cut(s)	175, 995, 1180, 1493, 1691
NciI	CCSGG	3 cut(s)	81, 410, 1171
NcoI	CCATGG	1 cut(s)	715
NdeI	CATATG	1 cut(s)	399
NlaIV	GGNNCC	4 cut(s)	791, 954, 1353, 2034
NmuCI	GTSAC	4 cut(s)	275, 730, 877, 1931
NruI	TCGCGA	1 cut(s)	114
NspI	RCATGY	2 cut(s)	1658, 1932
NspV	TTCGAA	1 cut(s)	598
PaeI	GCATGC	1 cut(s)	1658
PaeR7I	CTCGAG	1 cut(s)	1491
PagI	TCATGA	1 cut(s)	1321
PciSI	GCTCTTC	1 cut(s)	1542
PctI	GAATGC	1 cut(s)	180
PfeI	GAWTC	7 cut(s)	126, 708, 763, 1264, 1466, 1740, 1793
PfoI	TCCNGGA	2 cut(s)	928, 1402
PkrI	GCNGC	7 cut(s)	1111, 1192, 1623, 1626, 1684, 1964, 2093
PleI	GAGTC	2 cut(s)	519, 994
PmaCI	CACGTG	1 cut(s)	1447
PmlI	CACGTG	1 cut(s)	1447
PpsI	GAGTC	2 cut(s)	519, 994
Ppu21I	YACGTR	1 cut(s)	1447
PpuMI	RGGWCCY	1 cut(s)	953
PshBI	ATTAAT	1 cut(s)	947
Psp1406I	AACGTT	1 cut(s)	637
Psp5II	RGGWCCY	1 cut(s)	953
Psp6I	CCWGG	6 cut(s)	602, 928, 1005, 1354, 1402, 1627
PspCI	CACGTG	1 cut(s)	1447
PspEI	GGTNACC	1 cut(s)	701
PspFI	CCCAGC	3 cut(s)	147, 1291, 1583
PspGI	CCWGG	6 cut(s)	602, 928, 1005, 1354, 1402, 1627
PspN4I	GGNNCC	4 cut(s)	791, 954, 1353, 2034
PspPI	GGNCC	2 cut(s)	104, 953
PspPPI	RGGWCCY	1 cut(s)	953
PspXI	VCTCGAGB	1 cut(s)	1491
PstI	CTGCAG	1 cut(s)	2096
PstNI	CAGNNNCTG	1 cut(s)	2100
PsuI	RGATCY	4 cut(s)	568, 646, 789, 889
PvuII	CAGCTG	1 cut(s)	1685
RruI	TCGCGA	1 cut(s)	114
RsaI	GTAC	3 cut(s)	395, 1057, 1776
RsaNI	GTAC	3 cut(s)	394, 1056, 1775
RseI	CAYNNNNRTG	4 cut(s)	492, 549, 744, 1874
SapI	GCTCTTC	1 cut(s)	1542
SaqAI	TTAA	4 cut(s)	482, 885, 947, 1341
SatI	GCNGC	7 cut(s)	1110, 1191, 1622, 1625, 1683, 1963, 2092
Sau96I	GGNCC	2 cut(s)	104, 953
ScaI	AGTACT	2 cut(s)	1057, 1776
SchI	GAGTC	2 cut(s)	519, 994
ScrFI	CCNGG	9 cut(s)	81, 410, 604, 930, 1007, 1171, 1356, 1404, 1629
SduI	GDGCHC	6 cut(s)	148, 191, 204, 1446, 1696, 2012
SfaNI	GCATC	7 cut(s)	278, 525, 553, 613, 1177, 1969, 2065
SfcI	CTRYAG	2 cut(s)	850, 2092
Sfr274I	CTCGAG	1 cut(s)	1491
SfuI	TTCGAA	1 cut(s)	598
SinI	GGWCC	2 cut(s)	104, 953
SlaI	CTCGAG	1 cut(s)	1491
SmiMI	CAYNNNNRTG	4 cut(s)	492, 549, 744, 1874
SmlI	CTYRAG	1 cut(s)	1491
SmoI	CTYRAG	1 cut(s)	1491
SphI	GCATGC	1 cut(s)	1658
SsiI	CCGC	8 cut(s)	169, 844, 1112, 1625, 1824, 1860, 1893, 1997
SspMI	CTAG	4 cut(s)	1100, 1475, 1899, 2040
StyD4I	CCNGG	9 cut(s)	79, 408, 602, 928, 1005, 1169, 1354, 1402, 1627
StyI	CCWWGG	1 cut(s)	715
TaaI	ACNGT	6 cut(s)	166, 491, 913, 1318, 1725, 1990
TaiI	ACGT	3 cut(s)	252, 640, 1449
TatI	WGTACW	2 cut(s)	1055, 1774
TauI	GCSGC	1 cut(s)	1627
TfiI	GAWTC	7 cut(s)	126, 708, 763, 1264, 1466, 1740, 1793
Tru1I	TTAA	4 cut(s)	482, 885, 947, 1341
Tru9I	TTAA	4 cut(s)	482, 885, 947, 1341
TscAI	CASTG	8 cut(s)	169, 494, 928, 1290, 1559, 1701, 1851, 1993
TseFI	GTSAC	4 cut(s)	275, 730, 877, 1931
TseI	GCWGC	6 cut(s)	1109, 1190, 1621, 1682, 1962, 2091
Tsp45I	GTSAC	4 cut(s)	275, 730, 877, 1931
TspGWI	ACGGA	2 cut(s)	96, 604
TspRI	CASTG	8 cut(s)	169, 494, 928, 1290, 1559, 1701, 1851, 1993
VneI	GTGCAC	3 cut(s)	187, 200, 1692
VpaK11BI	GGWCC	2 cut(s)	104, 953
VspI	ATTAAT	1 cut(s)	947
XagI	CCTNNNNNAGG	1 cut(s)	2056
XapI	RAATTY	3 cut(s)	582, 856, 1607
XceI	RCATGY	2 cut(s)	1658, 1932
XhoI	CTCGAG	1 cut(s)	1491
XmiI	GTMKAC	2 cut(s)	1313, 1416
XspI	CTAG	4 cut(s)	1100, 1475, 1899, 2040
ZraI	GACGTC	1 cut(s)	250
ZrmI	AGTACT	2 cut(s)	1057, 1776

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.