Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0002257

Physical Location & Seq

Genomic Coordinates Forward (+)

13838384 .. 13841645

Gene Structure 3262 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022872

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1749 bp

ATGTTGATGATTCCAAGCCTTGAAGCTTGCAAGAAGAGGAAGCGAAGGTCAAAGGTTTATGGGTTTCATTCATTTGGGGAACCCGGCTACCCAATTCTTGCACAGGGCCCATTTCGTGATAACATTCGTCTGTTTCTTCAACAATGTGCGGAGCTCGAGAGTTACATTGTTCAGGGCATGCCCATTTGGTGCACTCTTCTTGTTCATGACAACCGAAACCTTGTTCTTCCTCTCTACATCATTGCAGAGAACGTCAAGACCTCTGACACCCCCTTCTGCGATCACTGCCGATGCACTGGTTGGAGTAACCATTTTGTATCGAAGAGAAAGTACCACATGATAATTCCAATGGATGATGACTGGAATAAGCCTTTGGATAATGGTATCTTGGATCTTTCAACCCATCTCTTACGTGGGTTAATTCACTGTAATGGCTTTGCTCATTTGCTATCATCAATGGACTTGGAGAAAATCACAGTCGAAGATGTCTCAAAGAAGTGGTCCATGGAACTTGGCCTGCTCCATGGAGTTGCTTATGGGCATCCTTGGTTTGGTAGATGGGGTTACAAATTTTGCCATGGAAGCTTTGGGATCATCCAAGATTTTAGTGACATGGACCAGTATGAAGAGCTGAAGAAAATTGTTCGTTACTACAGATATTTGAGTGAAACACAGTTAGTTACTATCAAAGATCTTCTCAGATTTATGCTTACTCTTAAGGCTTGCTTTCCTGCACAGAGAAACTCGCTACCTCTTACTGCAAAACCTGCAGATGTGAATGTGATTGAGAATGCAAAACCTGCAACCAGAGAATCCATCAAGATCAAGCCTCAGATAAAGGAAAAGTCTTCAAAGTATAGGAAGTTTGCTACTGTTGTTTCTCACATGGATAGCAGATGGCCTGCCAGAAGACTAGAGTTTGCAGCAGATGTGATTGTGAATGCACTGAAAGAAAAGAAAGAGAAGGACTTAAGAAATGGTGGGATGGCCCGGCATGATGTGCGAGATGCAGCTAGGTTGCATATTGGAGATACAGGTTTGTTGGATTATCTGTTGAAATCACAGAACAATGTGGTTGTTGGGAATCAGGTTGTCTGCCATTCAGTGAACCCAACCACTCGGATTTTGGAATATACGGTTCATGATCTTAATGATGGGGATAAAGTGTCTGAACCTGAGAAAGAGATACTTCCCCTACCCCCTCGATCAGCAGCTCCAGTTCCTGGAATTGACGTTTACGGTGATGTTCTTTATTTGTATGAGCATGTACTGTTGGGATATCCAGAATCTGGATTAGTAGAGTTGGCTACACAAGCAGTATTGGACACTAAGCACTTTGTAACGGAATGTCCATTTAGGGATGAGAAAGAGCAGTTACTGACATTATTTTGCCAAATCTTGCCAAGTTTGACTGATAAGGAAATTGAATTCAAGAGGGAGTTGCCTCCAGGTGAGATAGTGGTGATGCCGCTGGATGCAACTATTGGAGAGCTAAAGCAGGAAGCTGAGAAACAGTTTGTGGTGATGGAAATCAAGGGCTTGGAGGAATCAGATGATATGGATGTGCTTTCTGGAGCAGTTCAATCGGGGACGGGTTGGAATGATGATGGTGAAAGGATGGTGGCCTGTGATATATGCGAAGTGTGGCAGCATACACACTGCTGTGGAATGAAGGATGCTGATGAAGTCCCACGCTATTGCACATCGGTTCGTGCTGATAAAAATGACTGTCAAGCTGTCAATGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000212 GO:0000226 GO:0000228 GO:0000280 GO:0000785 GO:0000790 GO:0000791 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005719 GO:0006323 GO:0006355 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007059 GO:0007060 GO:0007140 GO:0007275 GO:0007276 GO:0008134 GO:0008150 GO:0009555 GO:0009889 GO:0009987 GO:0010032 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0030154 GO:0030261 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0033613 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044703 GO:0045132 GO:0048229 GO:0048232 GO:0048235 GO:0048285 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0051321 GO:0051704 GO:0055046 GO:0060255 GO:0065007 GO:0070013 GO:0070192 GO:0071103 GO:0071840 GO:0080090 GO:0097159 GO:0098813 GO:0140013 GO:1901363 GO:1903046 GO:1903506 GO:1990188 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD

Protein Analysis

583

Amino Acids

66.2

Weight (kDa)

5.95

Isoelectric Point (pI)

39.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_plant_repro	PF25874	299 - 382	1.5e-31	Winged helix-turn-helix domain in plant reproductive proteins
Ubiquitin_At1g33420	PF25565	457 - 531	1.3e-14	At1g33420-like, ubiquitin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002257)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66170
fragaria_vesca	FvH4_1g29990 FvH4_1g29990 FvH4_1g29990 FvH4_6g02390
malus_domestica	MD09G1267100.v1.1 MD17G1254900.v1.1 MD17G1255100.v1.1 MD17G1260200.v1.1
prunus_persica	Prupe.3G164800_v2.0.a1
pyrus_communis	pycom12401g00150 pycom461g00270
rosa_chinensis	RchiOBHm_Chr3g0450161 RchiOBHm_Chr3g0492331
rosa_laevigata	RLG00000022781 RLG00000022872 RLG00000022874 RLG00000022875 RLG00000025750
rosa_multiflora	Rmu_co8200976.1_g000001 Rmu_sc0003156.1_g000026 Rmu_sc0010184.1_g000005 Rmu_sc0010184.1_g000015 Rmu_sc0020297.1_g000001
rosa_roxburghii	Rroxscaffold_3G00226630 Rroxscaffold_6G00392410 Rroxscaffold_6G00427920
rosa_rugosa	Rorug02G0625900 Rorug03G0253300
rosa_samantha	Rh2AG397300 Rh2CG383900 Rh3AG025300 Rh3AG303200 Rh3BG025900 Rh3BG339200 Rh3BG339300 Rh3CG024800 Rh3CG336400 Rh3DG025900 Rh3DG327500 Rh3DG338500
rosa_wichuraiana	Rw3G002030 Rw3G026750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	775, 808
AccB7I	CCANNNNNTGG	2 cut(s)	1223, 1289
AciI	CCGC	2 cut(s)	149, 1469
AclWI	GGATC	2 cut(s)	399, 599
AcsI	RAATTY	2 cut(s)	569, 1427
AcuI	CTGAAG	1 cut(s)	653
AfaI	GTAC	2 cut(s)	332, 1269
AfiI	CCNNNNNNNGG	3 cut(s)	551, 1223, 1289
AflII	CTTAAG	2 cut(s)	716, 970
AgsI	TTSAA	8 cut(s)	23, 140, 399, 852, 1057, 1427, 1432, 1583
AjnI	CCWGG	2 cut(s)	1222, 1447
AjuI	GAANNNNNNNTTGG	2 cut(s)	356, 388
AleI	CACNNNNGTG	1 cut(s)	1662
AluBI	AGCT	9 cut(s)	26, 154, 585, 631, 1013, 1214, 1492, 1505, 1736
AluI	AGCT	9 cut(s)	26, 154, 585, 631, 1013, 1214, 1492, 1505, 1736
Alw21I	GWGCWC	2 cut(s)	156, 194
Alw26I	GTCTC	1 cut(s)	493
Alw44I	GTGCAC	1 cut(s)	190
AlwI	GGATC	2 cut(s)	399, 599
AlwNI	CAGNNNCTG	3 cut(s)	1223, 1289, 1378
Ama87I	CYCGRG	1 cut(s)	155
AoxI	GGCC	5 cut(s)	106, 514, 899, 987, 1623
ApaI	GGGCCC	1 cut(s)	110
ApaLI	GTGCAC	1 cut(s)	190
ApeKI	GCWGC	4 cut(s)	923, 1010, 1211, 1648
ApoI	RAATTY	2 cut(s)	569, 1427
ArsI	GACNNNNNNTTYG	2 cut(s)	485, 517
AspS9I	GGNCC	5 cut(s)	106, 107, 501, 616, 988
AsuC2I	CCSGG	2 cut(s)	84, 991
AsuHPI	GGTGA	5 cut(s)	1253, 1463, 1474, 1534, 1622
AvaI	CYCGRG	1 cut(s)	155
AvaII	GGWCC	2 cut(s)	501, 616
BaeGI	GKGCMC	2 cut(s)	110, 194
BanII	GRGCYC	2 cut(s)	110, 156
BarI	GAAGNNNNNNTAC	2 cut(s)	314, 346
BbsI	GAAGAC	2 cut(s)	840, 916
Bbv12I	GWGCWC	2 cut(s)	156, 194
BbvI	GCAGC	4 cut(s)	935, 1022, 1223, 1660
BccI	CCATC	9 cut(s)	411, 552, 824, 891, 979, 1148, 1519, 1601, 1612
BcgI	CGANNNNNNTGC	2 cut(s)	1566, 1600
BciT130I	CCWGG	2 cut(s)	1224, 1449
BcnI	CCSGG	2 cut(s)	84, 991
BcoDI	GTCTC	1 cut(s)	493
BfaI	CTAG	2 cut(s)	914, 1014
BfmI	CTRYAG	2 cut(s)	652, 768
BfrI	CTTAAG	2 cut(s)	716, 970
BfuAI	ACCTGC	2 cut(s)	775, 808
BglII	AGATCT	1 cut(s)	691
BisI	GCNGC	5 cut(s)	924, 1011, 1212, 1469, 1649
BlsI	GCNGC	5 cut(s)	925, 1012, 1213, 1470, 1650
Bme1390I	CCNGG	4 cut(s)	84, 991, 1224, 1449
Bme18I	GGWCC	2 cut(s)	501, 616
BmeT110I	CYCGRG	1 cut(s)	155
BmgT120I	GGNCC	5 cut(s)	106, 107, 501, 616, 988
BmiI	GGNNCC	2 cut(s)	81, 108
BmrFI	CCNGG	4 cut(s)	84, 991, 1224, 1449
BmsI	GCATC	6 cut(s)	281, 550, 997, 1455, 1465, 1666
BpiI	GAAGAC	2 cut(s)	840, 916
BpmI	CTGGAG	3 cut(s)	1200, 1431, 1593
BpuMI	CCSGG	2 cut(s)	84, 991
BsaAI	YACGTR	1 cut(s)	413
BsaBI	GATNNNNATC	1 cut(s)	1529
BsaJI	CCNNGG	4 cut(s)	504, 523, 545, 577
Bsc4I	CCNNNNNNNGG	3 cut(s)	551, 1223, 1289
Bse1I	ACTGG	4 cut(s)	301, 365, 619, 1217
Bse3DI	GCAATG	1 cut(s)	240
Bse8I	GATNNNNATC	1 cut(s)	1529
BseBI	CCWGG	2 cut(s)	1224, 1449
BseDI	CCNNGG	4 cut(s)	504, 523, 545, 577
BseGI	GGATG	9 cut(s)	358, 541, 594, 990, 1366, 1480, 1567, 1623, 1681
BseJI	GATNNNNATC	1 cut(s)	1529
BseLI	CCNNNNNNNGG	3 cut(s)	551, 1223, 1289
BseMI	GCAATG	1 cut(s)	240
BseMII	CTCAG	4 cut(s)	712, 845, 1167, 1497
BseNI	ACTGG	4 cut(s)	301, 365, 619, 1217
BseSI	GKGCMC	2 cut(s)	110, 194
BseXI	GCAGC	4 cut(s)	935, 1022, 1223, 1660
BsgI	GTGCAG	1 cut(s)	717
BshFI	GGCC	5 cut(s)	108, 516, 901, 989, 1625
BsiHKAI	GWGCWC	2 cut(s)	156, 194
BsiHKCI	CYCGRG	1 cut(s)	155
BsiSI	CCGG	2 cut(s)	84, 991
BslFI	GGGAC	2 cut(s)	1603, 1673
BslI	CCNNNNNNNGG	3 cut(s)	551, 1223, 1289
BsmAI	GTCTC	1 cut(s)	493
BsmFI	GGGAC	2 cut(s)	1603, 1673
BsmI	GAATGC	2 cut(s)	796, 946
BsnI	GGCC	5 cut(s)	108, 516, 901, 989, 1625
BsoBI	CYCGRG	1 cut(s)	155
Bsp120I	GGGCCC	1 cut(s)	106
Bsp1286I	GDGCHC	3 cut(s)	110, 156, 194
Bsp143I	GATC	7 cut(s)	280, 391, 591, 691, 822, 1144, 1205
Bsp19I	CCATGG	3 cut(s)	504, 523, 577
BspACI	CCGC	2 cut(s)	149, 1469
BspANI	GGCC	5 cut(s)	108, 516, 901, 989, 1625
BspCNI	CTCAG	4 cut(s)	711, 844, 1168, 1498
BspHI	TCATGA	2 cut(s)	205, 1141
BspLI	GGNNCC	2 cut(s)	81, 108
BspMAI	CTGCAG	1 cut(s)	772
BspMI	ACCTGC	2 cut(s)	775, 808
BspPI	GGATC	2 cut(s)	399, 599
BspQI	GCTCTTC	1 cut(s)	621
BspTI	CTTAAG	2 cut(s)	716, 970
BsrDI	GCAATG	1 cut(s)	240
BsrI	ACTGG	4 cut(s)	301, 365, 619, 1217
BssECI	CCNNGG	4 cut(s)	504, 523, 545, 577
BssMI	GATC	7 cut(s)	280, 391, 591, 691, 822, 1144, 1205
BssT1I	CCWWGG	4 cut(s)	504, 523, 545, 577
Bst2UI	CCWGG	2 cut(s)	1224, 1449
Bst4CI	ACNGT	9 cut(s)	428, 478, 675, 874, 1138, 1241, 1272, 1515, 1730
Bst6I	CTCTTC	4 cut(s)	29, 201, 317, 621
BstAFI	CTTAAG	2 cut(s)	716, 970
BstAPI	GCANNNNNTGC	3 cut(s)	767, 800, 1000
BstBAI	YACGTR	1 cut(s)	413
BstC8I	GCNNGC	5 cut(s)	28, 179, 518, 724, 903
BstDEI	CTNAG	5 cut(s)	698, 831, 1176, 1329, 1506
BstDSI	CCRYGG	3 cut(s)	504, 523, 577
BstF5I	GGATG	9 cut(s)	358, 541, 594, 990, 1366, 1480, 1567, 1623, 1681
BstKTI	GATC	7 cut(s)	283, 394, 594, 694, 825, 1147, 1208
BstMAI	GTCTC	1 cut(s)	493
BstMBI	GATC	7 cut(s)	280, 391, 591, 691, 822, 1144, 1205
BstMWI	GCNNNNNNNGC	7 cut(s)	285, 582, 767, 800, 1000, 1313, 1742
BstNI	CCWGG	2 cut(s)	1224, 1449
BstNSI	RCATGY	2 cut(s)	181, 1268
BstSCI	CCNGG	4 cut(s)	82, 989, 1222, 1447
BstSFI	CTRYAG	2 cut(s)	652, 768
BstSLI	GKGCMC	2 cut(s)	110, 194
BstV1I	GCAGC	4 cut(s)	935, 1022, 1223, 1660
BstV2I	GAAGAC	2 cut(s)	840, 916
BstX2I	RGATCY	2 cut(s)	391, 691
BstYI	RGATCY	2 cut(s)	391, 691
BsuRI	GGCC	5 cut(s)	108, 516, 901, 989, 1625
BtgI	CCRYGG	3 cut(s)	504, 523, 577
BtsCI	GGATG	9 cut(s)	358, 541, 594, 990, 1366, 1480, 1567, 1623, 1681
BtsI	GCAGTG	2 cut(s)	283, 1657
BtsIMutI	CAGTG	6 cut(s)	283, 294, 424, 944, 1110, 1657
BveI	ACCTGC	2 cut(s)	775, 808
Cac8I	GCNNGC	5 cut(s)	28, 179, 518, 724, 903
CaiI	CAGNNNCTG	3 cut(s)	1223, 1289, 1378
CciI	TCATGA	2 cut(s)	205, 1141
Cfr13I	GGNCC	5 cut(s)	106, 107, 501, 616, 988
Csp6I	GTAC	2 cut(s)	331, 1268
CviQI	GTAC	2 cut(s)	331, 1268
DdeI	CTNAG	5 cut(s)	698, 831, 1176, 1329, 1506
DpnI	GATC	7 cut(s)	282, 393, 593, 693, 824, 1146, 1207
DpnII	GATC	7 cut(s)	280, 391, 591, 691, 822, 1144, 1205
Eam1104I	CTCTTC	4 cut(s)	29, 201, 317, 621
EarI	CTCTTC	4 cut(s)	29, 201, 317, 621
Ecl136II	GAGCTC	1 cut(s)	154
Eco130I	CCWWGG	4 cut(s)	504, 523, 545, 577
Eco24I	GRGCYC	2 cut(s)	110, 156
Eco32I	GATATC	1 cut(s)	1280
Eco47I	GGWCC	2 cut(s)	501, 616
Eco53kI	GAGCTC	1 cut(s)	154
Eco57I	CTGAAG	1 cut(s)	653
Eco88I	CYCGRG	1 cut(s)	155
EcoICRI	GAGCTC	1 cut(s)	154
EcoO109I	RGGNCCY	1 cut(s)	106
EcoRI	GAATTC	1 cut(s)	1427
EcoRII	CCWGG	2 cut(s)	1222, 1447
EcoRV	GATATC	1 cut(s)	1280
EcoT14I	CCWWGG	4 cut(s)	504, 523, 545, 577
EcoT22I	ATGCAT	1 cut(s)	1747
EcoT38I	GRGCYC	2 cut(s)	110, 156
ErhI	CCWWGG	4 cut(s)	504, 523, 545, 577
FalI	AAGNNNNNCTT	4 cut(s)	710, 742, 1173, 1205
FaqI	GGGAC	2 cut(s)	1603, 1673
Fnu4HI	GCNGC	5 cut(s)	924, 1011, 1212, 1469, 1649
FokI	GGATG	9 cut(s)	365, 528, 581, 997, 1373, 1487, 1574, 1630, 1688
FriOI	GRGCYC	2 cut(s)	110, 156
Fsp4HI	GCNGC	5 cut(s)	924, 1011, 1212, 1469, 1649
FspBI	CTAG	2 cut(s)	914, 1014
GluI	GCNGC	5 cut(s)	924, 1011, 1212, 1469, 1649
GsuI	CTGGAG	3 cut(s)	1200, 1431, 1593
HaeIII	GGCC	5 cut(s)	108, 516, 901, 989, 1625
HapII	CCGG	2 cut(s)	84, 991
HindIII	AAGCTT	2 cut(s)	24, 583
HinfI	GANTC	5 cut(s)	10, 812, 1084, 1286, 1547
HpaII	CCGG	2 cut(s)	84, 991
HphI	GGTGA	5 cut(s)	1253, 1463, 1474, 1534, 1622
Hpy166II	GTNNAC	3 cut(s)	192, 1108, 1237
Hpy188I	TCNGA	6 cut(s)	265, 701, 834, 1122, 1171, 1552
Hpy8I	GTNNAC	3 cut(s)	192, 1108, 1237
HpyAV	CCTTC	4 cut(s)	39, 283, 958, 1666
HpyCH4III	ACNGT	9 cut(s)	428, 478, 675, 874, 1138, 1241, 1272, 1515, 1730
HpyCH4IV	ACGT	3 cut(s)	252, 412, 1233
HpyF10VI	GCNNNNNNNGC	7 cut(s)	285, 582, 767, 800, 1000, 1313, 1742
HpyF3I	CTNAG	5 cut(s)	698, 831, 1176, 1329, 1506
HpySE526I	ACGT	3 cut(s)	252, 412, 1233
Kzo9I	GATC	7 cut(s)	280, 391, 591, 691, 822, 1144, 1205
LguI	GCTCTTC	1 cut(s)	621
LmnI	GCTCC	4 cut(s)	151, 525, 1219, 1574
Lsp1109I	GCAGC	4 cut(s)	935, 1022, 1223, 1660
LweI	GCATC	6 cut(s)	281, 550, 997, 1455, 1465, 1666
MaeI	CTAG	2 cut(s)	914, 1014
MaeII	ACGT	3 cut(s)	252, 412, 1233
MaeIII	GTNAC	8 cut(s)	161, 305, 563, 608, 647, 679, 1339, 1374
MalI	GATC	7 cut(s)	282, 393, 593, 693, 824, 1146, 1207
MboI	GATC	7 cut(s)	280, 391, 591, 691, 822, 1144, 1205
MflI	RGATCY	2 cut(s)	391, 691
MhlI	GDGCHC	3 cut(s)	110, 156, 194
MluCI	AATT	8 cut(s)	93, 342, 420, 569, 639, 1227, 1422, 1427
MmeI	TCCRAC	3 cut(s)	281, 1023, 1577
MnlI	CCTC	9 cut(s)	30, 240, 271, 762, 840, 1212, 1428, 1455, 1537
Mph1103I	ATGCAT	1 cut(s)	1747
MseI	TTAA	4 cut(s)	419, 717, 971, 1149
MslI	CAYNNNNRTG	2 cut(s)	429, 1662
MspA1I	CMGCKG	1 cut(s)	1471
MspCI	CTTAAG	2 cut(s)	716, 970
MspI	CCGG	2 cut(s)	84, 991
MspR9I	CCNGG	4 cut(s)	84, 991, 1224, 1449
Mva1269I	GAATGC	2 cut(s)	796, 946
MvaI	CCWGG	2 cut(s)	1224, 1449
MwoI	GCNNNNNNNGC	7 cut(s)	285, 582, 767, 800, 1000, 1313, 1742
NciI	CCSGG	2 cut(s)	84, 991
NcoI	CCATGG	3 cut(s)	504, 523, 577
NdeII	GATC	7 cut(s)	280, 391, 591, 691, 822, 1144, 1205
NlaIV	GGNNCC	2 cut(s)	81, 108
NmuCI	GTSAC	1 cut(s)	608
NsiI	ATGCAT	1 cut(s)	1747
NspI	RCATGY	2 cut(s)	181, 1268
OliI	CACNNNNGTG	1 cut(s)	1662
PaeI	GCATGC	1 cut(s)	181
PaeR7I	CTCGAG	1 cut(s)	155
PagI	TCATGA	2 cut(s)	205, 1141
PciSI	GCTCTTC	1 cut(s)	621
PctI	GAATGC	2 cut(s)	796, 946
PfeI	GAWTC	5 cut(s)	10, 812, 1084, 1286, 1547
PflMI	CCANNNNNTGG	2 cut(s)	1223, 1289
PfoI	TCCNGGA	1 cut(s)	1222
PkrI	GCNGC	5 cut(s)	925, 1012, 1213, 1470, 1650
Ppu21I	YACGTR	1 cut(s)	413
Psp124BI	GAGCTC	1 cut(s)	156
Psp6I	CCWGG	2 cut(s)	1222, 1447
PspGI	CCWGG	2 cut(s)	1222, 1447
PspN4I	GGNNCC	2 cut(s)	81, 108
PspOMI	GGGCCC	1 cut(s)	106
PspPI	GGNCC	5 cut(s)	106, 107, 501, 616, 988
PstI	CTGCAG	1 cut(s)	772
PstNI	CAGNNNCTG	3 cut(s)	1223, 1289, 1378
PsuI	RGATCY	2 cut(s)	391, 691
RsaI	GTAC	2 cut(s)	332, 1269
RsaNI	GTAC	2 cut(s)	331, 1268
RseI	CAYNNNNRTG	2 cut(s)	429, 1662
SacI	GAGCTC	1 cut(s)	156
SapI	GCTCTTC	1 cut(s)	621
SaqAI	TTAA	4 cut(s)	419, 717, 971, 1149
SatI	GCNGC	5 cut(s)	924, 1011, 1212, 1469, 1649
Sau3AI	GATC	7 cut(s)	280, 391, 591, 691, 822, 1144, 1205
Sau96I	GGNCC	5 cut(s)	106, 107, 501, 616, 988
ScrFI	CCNGG	4 cut(s)	84, 991, 1224, 1449
SduI	GDGCHC	3 cut(s)	110, 156, 194
SfaNI	GCATC	6 cut(s)	281, 550, 997, 1455, 1465, 1666
SfcI	CTRYAG	2 cut(s)	652, 768
Sfr274I	CTCGAG	1 cut(s)	155
SinI	GGWCC	2 cut(s)	501, 616
SlaI	CTCGAG	1 cut(s)	155
SmiMI	CAYNNNNRTG	2 cut(s)	429, 1662
SmlI	CTYRAG	3 cut(s)	155, 716, 970
SmoI	CTYRAG	3 cut(s)	155, 716, 970
SphI	GCATGC	1 cut(s)	181
Sse9I	AATT	8 cut(s)	93, 342, 420, 569, 639, 1227, 1422, 1427
SsiI	CCGC	2 cut(s)	149, 1469
SspMI	CTAG	2 cut(s)	914, 1014
SstI	GAGCTC	1 cut(s)	156
StyD4I	CCNGG	4 cut(s)	82, 989, 1222, 1447
StyI	CCWWGG	4 cut(s)	504, 523, 545, 577
TaaI	ACNGT	9 cut(s)	428, 478, 675, 874, 1138, 1241, 1272, 1515, 1730
TaiI	ACGT	3 cut(s)	255, 415, 1236
TaqI	TCGA	4 cut(s)	156, 320, 480, 1204
TasI	AATT	8 cut(s)	93, 342, 420, 569, 639, 1227, 1422, 1427
TatI	WGTACW	1 cut(s)	1267
TauI	GCSGC	1 cut(s)	1471
TfiI	GAWTC	5 cut(s)	10, 812, 1084, 1286, 1547
Tru1I	TTAA	4 cut(s)	419, 717, 971, 1149
Tru9I	TTAA	4 cut(s)	419, 717, 971, 1149
TscAI	CASTG	6 cut(s)	290, 301, 431, 951, 1110, 1664
TseFI	GTSAC	1 cut(s)	608
TseI	GCWGC	4 cut(s)	923, 1010, 1211, 1648
Tsp45I	GTSAC	1 cut(s)	608
TspDTI	ATGAA	7 cut(s)	56, 60, 194, 639, 1130, 1685, 1698
TspGWI	ACGGA	1 cut(s)	1358
TspRI	CASTG	6 cut(s)	290, 301, 431, 951, 1110, 1664
Van91I	CCANNNNNTGG	2 cut(s)	1223, 1289
Vha464I	CTTAAG	2 cut(s)	716, 970
VneI	GTGCAC	1 cut(s)	190
VpaK11BI	GGWCC	2 cut(s)	501, 616
XapI	RAATTY	2 cut(s)	569, 1427
XceI	RCATGY	2 cut(s)	181, 1268
XcmI	CCANNNNNNNNNTGG	3 cut(s)	410, 584, 1123
XhoI	CTCGAG	1 cut(s)	155
XspI	CTAG	2 cut(s)	914, 1014
Zsp2I	ATGCAT	1 cut(s)	1747

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.