Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0002257

Physical Location & Seq

Genomic Coordinates Forward (+)

36928724 .. 36932072

Gene Structure 3349 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G026750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2046 bp

ATGATGATTCCAAGCCTTGAAGCCTGCAAGAAGAGGAAGCGAAGGCCAAAGGTTTATGGGTTCCATTCATTTGGGGAACCCGGCTACCCGATTCTTCCACTGGGTCCATTCCGTGATAACATTCGTCTCTTTCTTCAACAATGTGCAGAGCTTGAGAGTTACAGTGTTCAGGGCATGCCCGTTTGGTGCACTCTTCTTGTTCATGACAACCGAAGCCTTGTTCTTCCTCTCTACACCATTGAAGAGAACGTCAAGACCTCCGACACCCCCTTCTGCGATTACTGCCGATGCACTGGTTGGAGTAACCATTTTGTATCGAAGAGAAAGTACCACATGATAATTCCAATGGATGATGACTGGAATAAGCCTTTGGATGATGGTAACTTGGATGTTTCAACCCATCTCTTACATGGGTTAATTCACTGTAATGGGTTTGCTCATTTGCTATGCATCAATGGATTTGAAGGTGGTTCTAAGCATCTTTGTGGCAGAGAGCTCATGGATCTTTGGGATCGGATCTGCATTAATCTTCGAACCAGGAAAATCACAGTCGAAGATGTCTCAAAGAAACGGTCCATGGAACTTCGCCTGCTCCATGGAGTTGCTTATGGGCATCCTTGGTTTGGTAGATGGGGTTACAAATTTTGCCATGGAAGCTTTGGCGTCAAAGAGCACATTTATGAAAGAGCACTTGAGATTCTCAGCTCATTAAAACTTGAAAAGATCATCCAAGATTTTAGTGACATGGACCAGTATGAAGAGCTGAAGAAAATTGTTCGTTACTACAGATATTTGAGTGAAACACAGTTAGTTACTATCAAAGATCTTCTCAGATTTATGCTTACTATTAAGGCTTGCTTTCCTGCACAGAGAAACTCGCTACTTCCTACTGCAAAACCTGCAGATGTGATTGAGAATGCAAAACCTGCAACCAGAGAATCCGTTAAGATCAAGCCTCTGATAAAGGAAAAGTCTTCAAAGTATAGGAAGTTTGCTACTGTTGTTTCTCACATGGATAGCAGATGGCCTGCCAGAAGACTAGAGTTTGCAGCAGATGTGATTGTGAATGCGCTGAAAGAAAAGAAAGAGAAGGACTTTAGAAATGGTGGGATGGCCCGGCAAGATGTGCGAGATGCAGCTAGGTTGCATATTGGAGATACAGGTTTGTTGGATTATGTGCTGAAATCACTGAACAATGTGGTTGTTGGGAATCAGGTTGTCTGCCGTTCAGTGAATCCAACCACTCGGATTTTGGAATATACGGTTCATGATCTTAATGATGGGGATAAAGTGTCTGAACCTGAGAAAGAGATGCTTCCCCTACCCCCTCCACCAGCTGCTCCAGTTCCTGGAATTGATGTTTACTGTGATGTTCTTTATTTGTATGAGCATGTACTGTTGGGATATCCCGAATCTGGATTGCTAGAGTTGGCTACACAAGCAGTATTGGACACTAAGCACTTTGTAAAGGAATGTCCATTTAGGGATGAGAAAGAGCAGTTACTGACATTGTTTTGCCAAATCTTGCCAAGTTTGACTGATAAGGAAATTGAATTCAAGAGGGAGTTGCCTCCTGGTGAGATAGTGGTAATGCCACTGGATGCAACTGTTGGAGAGCTAAAGCAGGAAGCTGAGAGTGCAATGAGGGATACATATTGTATCACAGAACAGTTTGTGGTGATGGAAATCAAAGGCTTAGAGGAATCAGATGATATGGAAGTGCTTTCTGGAGCAGTTCAATCGGGTACAGAGGTTGGAGTGAGAGGGAGTGGGATAGATTTAGACACACCGTTGAGGTACCAAGGGGGATCGGACACATGGATGGTGAGATGTGAATGTGGGGCTACAGATGATGATGGTGAAAGGATGGTGGCCTGTGATATATGTGAAGTGTGGCAGCATACACGCTGCTGTGGAATGGAGGATGCTGATGAAGTCCCACGTCTGTTCATTTGCTCAACATGTTACGTTTCACTTGTTCCGCCTAAAACTGAACCTGCAGCTAAATTTGACTGTTCCACTGCGTTTCTGGAGTGGAGACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000212 GO:0000226 GO:0000228 GO:0000280 GO:0000785 GO:0000790 GO:0000791 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005719 GO:0006323 GO:0006355 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007059 GO:0007060 GO:0007140 GO:0007275 GO:0007276 GO:0008134 GO:0008150 GO:0009555 GO:0009889 GO:0009987 GO:0010032 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0030154 GO:0030261 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0033613 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044703 GO:0045132 GO:0048229 GO:0048232 GO:0048235 GO:0048285 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0051321 GO:0051704 GO:0055046 GO:0060255 GO:0065007 GO:0070013 GO:0070192 GO:0071103 GO:0071840 GO:0080090 GO:0097159 GO:0098813 GO:0140013 GO:1901363 GO:1903046 GO:1903506 GO:1990188 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD

Protein Analysis

681

Amino Acids

77.62

Weight (kDa)

5.77

Isoelectric Point (pI)

41.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_plant_repro	PF25874	341 - 424	1.1e-34	Winged helix-turn-helix domain in plant reproductive proteins
Ubiquitin_At1g33420	PF25565	499 - 591	4.9e-30	At1g33420-like, ubiquitin-like domain
PHD	PF00628	611 - 655	5.8e-06	PHD-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002257)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66170
fragaria_vesca	FvH4_1g29990 FvH4_1g29990 FvH4_1g29990 FvH4_6g02390
malus_domestica	MD09G1267100.v1.1 MD17G1254900.v1.1 MD17G1255100.v1.1 MD17G1260200.v1.1
prunus_persica	Prupe.3G164800_v2.0.a1
pyrus_communis	pycom12401g00150 pycom461g00270
rosa_chinensis	RchiOBHm_Chr3g0450161 RchiOBHm_Chr3g0492331
rosa_laevigata	RLG00000022781 RLG00000022872 RLG00000022874 RLG00000022875 RLG00000025750
rosa_multiflora	Rmu_co8200976.1_g000001 Rmu_sc0003156.1_g000026 Rmu_sc0010184.1_g000005 Rmu_sc0010184.1_g000015 Rmu_sc0020297.1_g000001
rosa_roxburghii	Rroxscaffold_3G00226630 Rroxscaffold_6G00392410 Rroxscaffold_6G00427920
rosa_rugosa	Rorug02G0625900 Rorug03G0253300
rosa_samantha	Rh2AG397300 Rh2CG383900 Rh3AG025300 Rh3AG303200 Rh3BG025900 Rh3BG339200 Rh3BG339300 Rh3CG024800 Rh3CG336400 Rh3DG025900 Rh3DG327500 Rh3DG338500
rosa_wichuraiana	Rw3G002030 Rw3G026750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	907, 934, 2005
Acc65I	GGTACC	1 cut(s)	1797
AccB1I	GGYRCC	1 cut(s)	1797
AccB7I	CCANNNNNTGG	1 cut(s)	1349
AciI	CCGC	1 cut(s)	1982
AclWI	GGATC	4 cut(s)	510, 519, 524, 1816
AcsI	RAATTY	3 cut(s)	641, 1553, 2006
AcuI	CTGAAG	1 cut(s)	785
AcyI	GRCGYC	1 cut(s)	663
AfaI	GTAC	4 cut(s)	329, 1395, 1747, 1799
AfiI	CCNNNNNNNGG	3 cut(s)	623, 1349, 1415
AflIII	ACRYGT	1 cut(s)	1961
AjiI	CACGTC	1 cut(s)	1943
AjnI	CCWGG	3 cut(s)	536, 1348, 1573
AjuI	GAANNNNNNNTTGG	2 cut(s)	353, 385
Alw21I	GWGCWC	4 cut(s)	191, 498, 675, 691
Alw26I	GTCTC	3 cut(s)	131, 565, 2032
Alw44I	GTGCAC	1 cut(s)	187
AlwI	GGATC	4 cut(s)	510, 519, 524, 1816
AlwNI	CAGNNNCTG	2 cut(s)	1349, 1504
AoxI	GGCC	4 cut(s)	44, 1025, 1113, 1872
ApaLI	GTGCAC	1 cut(s)	187
ApeKI	GCWGC	6 cut(s)	1049, 1136, 1337, 1897, 1908, 2000
ApoI	RAATTY	3 cut(s)	641, 1553, 2006
ArsI	GACNNNNNNTTYG	2 cut(s)	557, 589
AseI	ATTAAT	1 cut(s)	525
Asp718I	GGTACC	1 cut(s)	1797
AspLEI	GCGC	1 cut(s)	1072
AspS9I	GGNCC	4 cut(s)	104, 573, 748, 1114
AsuC2I	CCSGG	2 cut(s)	81, 1117
AsuHPI	GGTGA	4 cut(s)	1589, 1690, 1837, 1871
AsuII	TTCGAA	1 cut(s)	532
AvaII	GGWCC	3 cut(s)	104, 573, 748
BaeGI	GKGCMC	1 cut(s)	191
BaeI	ACNNNNGTAYC	2 cut(s)	1737, 1770
BanI	GGYRCC	1 cut(s)	1797
BanII	GRGCYC	1 cut(s)	498
BarI	GAAGNNNNNNTAC	2 cut(s)	311, 343
BbsI	GAAGAC	2 cut(s)	966, 1042
Bbv12I	GWGCWC	4 cut(s)	191, 498, 675, 691
BbvI	GCAGC	6 cut(s)	1061, 1148, 1324, 1895, 1909, 2012
BceAI	ACGGC	1 cut(s)	1209
BcgI	CGANNNNNNTGC	2 cut(s)	1722, 1756
BciT130I	CCWGG	3 cut(s)	538, 1350, 1575
BciVI	GTATCC	1 cut(s)	1642
BcnI	CCSGG	2 cut(s)	81, 1117
BcoDI	GTCTC	3 cut(s)	131, 565, 2032
BfaI	CTAG	3 cut(s)	1040, 1140, 1424
BfmI	CTRYAG	4 cut(s)	784, 900, 1845, 1998
BfuAI	ACCTGC	3 cut(s)	907, 934, 2005
BfuI	GTATCC	1 cut(s)	1642
BglII	AGATCT	1 cut(s)	823
BisI	GCNGC	6 cut(s)	1050, 1137, 1338, 1898, 1909, 2001
BlsI	GCNGC	6 cut(s)	1051, 1138, 1339, 1899, 1910, 2002
Bme1390I	CCNGG	5 cut(s)	81, 538, 1117, 1350, 1575
Bme18I	GGWCC	3 cut(s)	104, 573, 748
BmgBI	CACGTC	1 cut(s)	1943
BmgT120I	GGNCC	4 cut(s)	104, 573, 748, 1114
BmiI	GGNNCC	4 cut(s)	62, 78, 105, 1799
BmrFI	CCNGG	5 cut(s)	81, 538, 1117, 1350, 1575
BmrI	ACTGGG	1 cut(s)	110
BmsI	GCATC	8 cut(s)	278, 459, 487, 622, 1123, 1302, 1591, 1915
BmuI	ACTGGG	1 cut(s)	110
BpiI	GAAGAC	2 cut(s)	966, 1042
BpmI	CTGGAG	2 cut(s)	1326, 1749
Bpu14I	TTCGAA	1 cut(s)	532
BpuEI	CTTGAG	2 cut(s)	173, 713
BpuMI	CCSGG	2 cut(s)	81, 1117
BsaBI	GATNNNNATC	1 cut(s)	1685
BsaHI	GRCGYC	1 cut(s)	663
BsaJI	CCNNGG	5 cut(s)	576, 595, 617, 649, 1801
Bsc4I	CCNNNNNNNGG	3 cut(s)	623, 1349, 1415
Bse1I	ACTGG	6 cut(s)	105, 298, 362, 751, 1343, 1602
Bse3DI	GCAATG	1 cut(s)	1647
Bse8I	GATNNNNATC	1 cut(s)	1685
BseBI	CCWGG	3 cut(s)	538, 1350, 1575
BseDI	CCNNGG	5 cut(s)	576, 595, 617, 649, 1801
BseJI	GATNNNNATC	1 cut(s)	1685
BseLI	CCNNNNNNNGG	3 cut(s)	623, 1349, 1415
BseMI	GCAATG	1 cut(s)	1647
BseMII	CTCAG	4 cut(s)	715, 844, 1293, 1623
BseNI	ACTGG	6 cut(s)	105, 298, 362, 751, 1343, 1602
BseSI	GKGCMC	1 cut(s)	191
BseXI	GCAGC	6 cut(s)	1061, 1148, 1324, 1895, 1909, 2012
BsgI	GTGCAG	2 cut(s)	165, 849
BshFI	GGCC	4 cut(s)	46, 1027, 1115, 1874
BshNI	GGYRCC	1 cut(s)	1797
BsiHKAI	GWGCWC	4 cut(s)	191, 498, 675, 691
BsiSI	CCGG	2 cut(s)	81, 1117
BslFI	GGGAC	1 cut(s)	1922
BslI	CCNNNNNNNGG	3 cut(s)	623, 1349, 1415
BsmAI	GTCTC	3 cut(s)	131, 565, 2032
BsmBI	CGTCTC	1 cut(s)	131
BsmFI	GGGAC	1 cut(s)	1922
BsmI	GAATGC	2 cut(s)	922, 1072
BsnI	GGCC	4 cut(s)	46, 1027, 1115, 1874
Bsp119I	TTCGAA	1 cut(s)	532
Bsp1286I	GDGCHC	4 cut(s)	191, 498, 675, 691
Bsp143I	GATC	8 cut(s)	502, 511, 516, 723, 823, 948, 1270, 1808
Bsp19I	CCATGG	3 cut(s)	576, 595, 649
BspACI	CCGC	1 cut(s)	1982
BspANI	GGCC	4 cut(s)	46, 1027, 1115, 1874
BspCNI	CTCAG	4 cut(s)	714, 843, 1294, 1624
BspHI	TCATGA	2 cut(s)	202, 1267
BspLI	GGNNCC	4 cut(s)	62, 78, 105, 1799
BspMAI	CTGCAG	2 cut(s)	904, 2002
BspMI	ACCTGC	3 cut(s)	907, 934, 2005
BspPI	GGATC	4 cut(s)	510, 519, 524, 1816
BspQI	GCTCTTC	1 cut(s)	753
BspT104I	TTCGAA	1 cut(s)	532
BspT107I	GGYRCC	1 cut(s)	1797
BsrDI	GCAATG	1 cut(s)	1647
BsrI	ACTGG	6 cut(s)	105, 298, 362, 751, 1343, 1602
BssECI	CCNNGG	5 cut(s)	576, 595, 617, 649, 1801
BssMI	GATC	8 cut(s)	502, 511, 516, 723, 823, 948, 1270, 1808
BssNI	GRCGYC	1 cut(s)	663
BssT1I	CCWWGG	5 cut(s)	576, 595, 617, 649, 1801
Bst2UI	CCWGG	3 cut(s)	538, 1350, 1575
Bst6I	CTCTTC	5 cut(s)	26, 198, 237, 314, 753
BstACI	GRCGYC	1 cut(s)	663
BstAPI	GCANNNNNTGC	3 cut(s)	899, 926, 1126
BstBI	TTCGAA	1 cut(s)	532
BstC8I	GCNNGC	5 cut(s)	25, 176, 590, 856, 1029
BstDEI	CTNAG	7 cut(s)	474, 701, 830, 1302, 1455, 1632, 1696
BstDSI	CCRYGG	3 cut(s)	576, 595, 649
BstHHI	GCGC	1 cut(s)	1072
BstKTI	GATC	8 cut(s)	505, 514, 519, 726, 826, 951, 1273, 1811
BstMAI	GTCTC	3 cut(s)	131, 565, 2032
BstMBI	GATC	8 cut(s)	502, 511, 516, 723, 823, 948, 1270, 1808
BstMWI	GCNNNNNNNGC	7 cut(s)	282, 654, 899, 926, 1126, 1439, 1637
BstNI	CCWGG	3 cut(s)	538, 1350, 1575
BstNSI	RCATGY	3 cut(s)	178, 1394, 1965
BstSCI	CCNGG	5 cut(s)	79, 536, 1115, 1348, 1573
BstSFI	CTRYAG	4 cut(s)	784, 900, 1845, 1998
BstSLI	GKGCMC	1 cut(s)	191
BstV1I	GCAGC	6 cut(s)	1061, 1148, 1324, 1895, 1909, 2012
BstV2I	GAAGAC	2 cut(s)	966, 1042
BstX2I	RGATCY	3 cut(s)	502, 516, 823
BstXI	CCANNNNNNTGG	1 cut(s)	71
BstYI	RGATCY	3 cut(s)	502, 516, 823
BsuI	GTATCC	1 cut(s)	1642
BsuRI	GGCC	4 cut(s)	46, 1027, 1115, 1874
BtgI	CCRYGG	3 cut(s)	576, 595, 649
BtrI	CACGTC	1 cut(s)	1943
BtsI	GCAGTG	1 cut(s)	2019
BtsIMutI	CAGTG	8 cut(s)	98, 169, 291, 421, 1187, 1236, 1595, 2019
BveI	ACCTGC	3 cut(s)	907, 934, 2005
Cac8I	GCNNGC	5 cut(s)	25, 176, 590, 856, 1029
CaiI	CAGNNNCTG	2 cut(s)	1349, 1504
CciI	TCATGA	2 cut(s)	202, 1267
CfoI	GCGC	1 cut(s)	1072
Cfr13I	GGNCC	4 cut(s)	104, 573, 748, 1114
CseI	GACGC	1 cut(s)	652
Csp6I	GTAC	4 cut(s)	328, 1394, 1746, 1798
CviQI	GTAC	4 cut(s)	328, 1394, 1746, 1798
DdeI	CTNAG	7 cut(s)	474, 701, 830, 1302, 1455, 1632, 1696
DpnI	GATC	8 cut(s)	504, 513, 518, 725, 825, 950, 1272, 1810
DpnII	GATC	8 cut(s)	502, 511, 516, 723, 823, 948, 1270, 1808
Eam1104I	CTCTTC	5 cut(s)	26, 198, 237, 314, 753
EarI	CTCTTC	5 cut(s)	26, 198, 237, 314, 753
EciI	GGCGGA	1 cut(s)	1971
Ecl136II	GAGCTC	1 cut(s)	496
Eco130I	CCWWGG	5 cut(s)	576, 595, 617, 649, 1801
Eco24I	GRGCYC	1 cut(s)	498
Eco32I	GATATC	1 cut(s)	1406
Eco47I	GGWCC	3 cut(s)	104, 573, 748
Eco53kI	GAGCTC	1 cut(s)	496
Eco57I	CTGAAG	1 cut(s)	785
EcoICRI	GAGCTC	1 cut(s)	496
EcoRI	GAATTC	1 cut(s)	1553
EcoRII	CCWGG	3 cut(s)	536, 1348, 1573
EcoRV	GATATC	1 cut(s)	1406
EcoT14I	CCWWGG	5 cut(s)	576, 595, 617, 649, 1801
EcoT22I	ATGCAT	1 cut(s)	452
EcoT38I	GRGCYC	1 cut(s)	498
ErhI	CCWWGG	5 cut(s)	576, 595, 617, 649, 1801
Esp3I	CGTCTC	1 cut(s)	131
FalI	AAGNNNNNCTT	4 cut(s)	842, 874, 1299, 1331
FaqI	GGGAC	1 cut(s)	1922
Fnu4HI	GCNGC	6 cut(s)	1050, 1137, 1338, 1898, 1909, 2001
FriOI	GRGCYC	1 cut(s)	498
Fsp4HI	GCNGC	6 cut(s)	1050, 1137, 1338, 1898, 1909, 2001
FspBI	CTAG	3 cut(s)	1040, 1140, 1424
GlaI	GCGC	1 cut(s)	1071
GluI	GCNGC	6 cut(s)	1050, 1137, 1338, 1898, 1909, 2001
GsuI	CTGGAG	2 cut(s)	1326, 1749
HaeIII	GGCC	4 cut(s)	46, 1027, 1115, 1874
HapII	CCGG	2 cut(s)	81, 1117
HgaI	GACGC	1 cut(s)	652
HhaI	GCGC	1 cut(s)	1072
Hin1I	GRCGYC	1 cut(s)	663
Hin6I	GCGC	1 cut(s)	1070
HinP1I	GCGC	1 cut(s)	1070
HindIII	AAGCTT	1 cut(s)	655
HinfI	GANTC	8 cut(s)	7, 91, 697, 938, 1210, 1234, 1412, 1703
HpaII	CCGG	2 cut(s)	81, 1117
HphI	GGTGA	4 cut(s)	1589, 1690, 1837, 1871
Hpy166II	GTNNAC	2 cut(s)	189, 1363
Hpy188I	TCNGA	8 cut(s)	262, 516, 833, 960, 1248, 1297, 1708, 1813
Hpy188III	TCNNGA	8 cut(s)	203, 253, 1268, 1409, 1416, 1558, 1728, 2030
Hpy8I	GTNNAC	2 cut(s)	189, 1363
HpyAV	CCTTC	4 cut(s)	36, 280, 458, 1084
HpyCH4IV	ACGT	3 cut(s)	249, 1942, 1968
HpyF10VI	GCNNNNNNNGC	7 cut(s)	282, 654, 899, 926, 1126, 1439, 1637
HpyF3I	CTNAG	7 cut(s)	474, 701, 830, 1302, 1455, 1632, 1696
HpySE526I	ACGT	3 cut(s)	249, 1942, 1968
Hsp92I	GRCGYC	1 cut(s)	663
HspAI	GCGC	1 cut(s)	1070
KpnI	GGTACC	1 cut(s)	1801
Kzo9I	GATC	8 cut(s)	502, 511, 516, 723, 823, 948, 1270, 1808
LguI	GCTCTTC	1 cut(s)	753
LmnI	GCTCC	3 cut(s)	597, 1345, 1730
Lsp1109I	GCAGC	6 cut(s)	1061, 1148, 1324, 1895, 1909, 2012
LweI	GCATC	8 cut(s)	278, 459, 487, 622, 1123, 1302, 1591, 1915
MaeI	CTAG	3 cut(s)	1040, 1140, 1424
MaeII	ACGT	3 cut(s)	249, 1942, 1968
MaeIII	GTNAC	9 cut(s)	158, 302, 380, 635, 740, 779, 811, 1500, 1964
MalI	GATC	8 cut(s)	504, 513, 518, 725, 825, 950, 1272, 1810
MboI	GATC	8 cut(s)	502, 511, 516, 723, 823, 948, 1270, 1808
MflI	RGATCY	3 cut(s)	502, 516, 823
MhlI	GDGCHC	4 cut(s)	191, 498, 675, 691
MluCI	AATT	8 cut(s)	339, 417, 641, 771, 1353, 1548, 1553, 2006
MmeI	TCCRAC	6 cut(s)	278, 285, 1149, 1262, 1591, 1735
Mph1103I	ATGCAT	1 cut(s)	452
MseI	TTAA	6 cut(s)	416, 525, 710, 849, 945, 1275
MslI	CAYNNNNRTG	4 cut(s)	426, 483, 678, 1820
MspA1I	CMGCKG	1 cut(s)	1337
MspI	CCGG	2 cut(s)	81, 1117
MspR9I	CCNGG	5 cut(s)	81, 538, 1117, 1350, 1575
Mva1269I	GAATGC	2 cut(s)	922, 1072
MvaI	CCWGG	3 cut(s)	538, 1350, 1575
MwoI	GCNNNNNNNGC	7 cut(s)	282, 654, 899, 926, 1126, 1439, 1637
NciI	CCSGG	2 cut(s)	81, 1117
NcoI	CCATGG	3 cut(s)	576, 595, 649
NdeII	GATC	8 cut(s)	502, 511, 516, 723, 823, 948, 1270, 1808
NlaIV	GGNNCC	4 cut(s)	62, 78, 105, 1799
NmuCI	GTSAC	1 cut(s)	740
NsiI	ATGCAT	1 cut(s)	452
NspI	RCATGY	3 cut(s)	178, 1394, 1965
NspV	TTCGAA	1 cut(s)	532
PaeI	GCATGC	1 cut(s)	178
PagI	TCATGA	2 cut(s)	202, 1267
PciI	ACATGT	1 cut(s)	1961
PciSI	GCTCTTC	1 cut(s)	753
PctI	GAATGC	2 cut(s)	922, 1072
PfeI	GAWTC	8 cut(s)	7, 91, 697, 938, 1210, 1234, 1412, 1703
PflMI	CCANNNNNTGG	1 cut(s)	1349
PfoI	TCCNGGA	1 cut(s)	1348
PkrI	GCNGC	6 cut(s)	1051, 1138, 1339, 1899, 1910, 2002
PscI	ACATGT	1 cut(s)	1961
PshBI	ATTAAT	1 cut(s)	525
Psp124BI	GAGCTC	1 cut(s)	498
Psp6I	CCWGG	3 cut(s)	536, 1348, 1573
PspGI	CCWGG	3 cut(s)	536, 1348, 1573
PspN4I	GGNNCC	4 cut(s)	62, 78, 105, 1799
PspPI	GGNCC	4 cut(s)	104, 573, 748, 1114
PstI	CTGCAG	2 cut(s)	904, 2002
PstNI	CAGNNNCTG	2 cut(s)	1349, 1504
PsuI	RGATCY	3 cut(s)	502, 516, 823
PvuII	CAGCTG	1 cut(s)	1337
RsaI	GTAC	4 cut(s)	329, 1395, 1747, 1799
RsaNI	GTAC	4 cut(s)	328, 1394, 1746, 1798
RseI	CAYNNNNRTG	4 cut(s)	426, 483, 678, 1820
SacI	GAGCTC	1 cut(s)	498
SapI	GCTCTTC	1 cut(s)	753
SaqAI	TTAA	6 cut(s)	416, 525, 710, 849, 945, 1275
SatI	GCNGC	6 cut(s)	1050, 1137, 1338, 1898, 1909, 2001
Sau3AI	GATC	8 cut(s)	502, 511, 516, 723, 823, 948, 1270, 1808
Sau96I	GGNCC	4 cut(s)	104, 573, 748, 1114
ScrFI	CCNGG	5 cut(s)	81, 538, 1117, 1350, 1575
SduI	GDGCHC	4 cut(s)	191, 498, 675, 691
SfaNI	GCATC	8 cut(s)	278, 459, 487, 622, 1123, 1302, 1591, 1915
SfcI	CTRYAG	4 cut(s)	784, 900, 1845, 1998
SfuI	TTCGAA	1 cut(s)	532
SinI	GGWCC	3 cut(s)	104, 573, 748
SmiMI	CAYNNNNRTG	4 cut(s)	426, 483, 678, 1820
SmlI	CTYRAG	2 cut(s)	152, 692
SmoI	CTYRAG	2 cut(s)	152, 692
SphI	GCATGC	1 cut(s)	178
Sse9I	AATT	8 cut(s)	339, 417, 641, 771, 1353, 1548, 1553, 2006
SsiI	CCGC	1 cut(s)	1982
SspMI	CTAG	3 cut(s)	1040, 1140, 1424
SstI	GAGCTC	1 cut(s)	498
StyD4I	CCNGG	5 cut(s)	79, 536, 1115, 1348, 1573
StyI	CCWWGG	5 cut(s)	576, 595, 617, 649, 1801
TaiI	ACGT	3 cut(s)	252, 1945, 1971
TaqI	TCGA	3 cut(s)	317, 532, 552
TasI	AATT	8 cut(s)	339, 417, 641, 771, 1353, 1548, 1553, 2006
TatI	WGTACW	1 cut(s)	1393
TfiI	GAWTC	8 cut(s)	7, 91, 697, 938, 1210, 1234, 1412, 1703
Tru1I	TTAA	6 cut(s)	416, 525, 710, 849, 945, 1275
Tru9I	TTAA	6 cut(s)	416, 525, 710, 849, 945, 1275
TscAI	CASTG	8 cut(s)	105, 169, 298, 428, 1194, 1236, 1602, 2026
TseFI	GTSAC	1 cut(s)	740
TseI	GCWGC	6 cut(s)	1049, 1136, 1337, 1897, 1908, 2000
Tsp45I	GTSAC	1 cut(s)	740
TspDTI	ATGAA	7 cut(s)	57, 191, 696, 771, 1256, 1939, 1947
TspGWI	ACGGA	2 cut(s)	101, 931
TspRI	CASTG	8 cut(s)	105, 169, 298, 428, 1194, 1236, 1602, 2026
Van91I	CCANNNNNTGG	1 cut(s)	1349
VneI	GTGCAC	1 cut(s)	187
VpaK11BI	GGWCC	3 cut(s)	104, 573, 748
VspI	ATTAAT	1 cut(s)	525
XapI	RAATTY	3 cut(s)	641, 1553, 2006
XceI	RCATGY	3 cut(s)	178, 1394, 1965
XcmI	CCANNNNNNNNNTGG	4 cut(s)	407, 656, 1249, 2026
XspI	CTAG	3 cut(s)	1040, 1140, 1424
Zsp2I	ATGCAT	1 cut(s)	452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.