Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0002257

Physical Location & Seq

Genomic Coordinates Forward (+)

13903311 .. 13908365

Gene Structure 5055 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022875

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGCTGCTGCATGCAACTGTTGGAAAGCTAAAGCAGGAAGCTGAGAGTGCACTGAGGGGTACATGTTGTATCACAAAACAGTTTGTGGTGATGGAAATCAAAGGCTTGGAGGAATCAGATAATATGGATGTGCTTTCTGGAGTAGTTCAGTCGAGGACAGAGGTTGGAGTGAGAGGGAGTGGGATAGATTTAGACGCACCTTTGAGGTACCAAGGGGGAATAGACATATGGATGGTGACATGTGAATGTGGGGCTACAGATGATGGTGGTGGTGAAATGATGGTGGCCTGTGATATACGCGAAGTGTGGCAGTGTACACGCTGCCGTGGAATGGAGGATGCTGAAGAAGGTGGTTCTAAGCACCTTTGTGGCAGAGAGCTCATAGATATTTGGGATCAGATCTACGTTAATCTCCCAACCTGGAAAATCATAGTGGAAGATGTCTTAAAGAAGCGTTCCATGGAACTTTGCCTTCTCGAGATACCTGATAGAGGCTCAACCAACATATGCGTTCGCTTGCCTGGTTTGCTAATAGTAGAAGTTGACTCATGTCGAATGAAGACTTCTTTTGGAAATCTTATTGCCACAATGTGCAGCGAAGTTAAGCAATGCTATGATGTATGGCAGCATATGGAAAAGTATGCCAACATGAACCCTAAAGATAGGTCTGTGTACAAGGTGGCAAAGTCAGCCTATGAGTATATTCTGCAACTAAAAAAAGGTGAAATTGGCATGTTCATTGGTTCGGTTGAACAAGGGGATGCAGTTGTATATCCGTTGGATAATGATAACCGAGAAAATGATTATCACCTAAGAAGGCTGAAATGCTTAAAAGCCCCCTATACTGTCATGGGCACAAGATCCGATTATGCGTTAGAAGAATTAGGGAAGTGGGACAACATCTTACCAAAGGATGCTGTGATTTGTACATGGAGAGGCCTGCTTGCTGCTGCTCTTGGAGACCCATACACAAATGGCATGGAGAACTTTTCGTGTTTGTGTGGGATGTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000212 GO:0000226 GO:0000228 GO:0000280 GO:0000785 GO:0000790 GO:0000791 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005719 GO:0006323 GO:0006355 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007059 GO:0007060 GO:0007140 GO:0007275 GO:0007276 GO:0008134 GO:0008150 GO:0009555 GO:0009889 GO:0009987 GO:0010032 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0030154 GO:0030261 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0033613 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044703 GO:0045132 GO:0048229 GO:0048232 GO:0048235 GO:0048285 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0051321 GO:0051704 GO:0055046 GO:0060255 GO:0065007 GO:0070013 GO:0070192 GO:0071103 GO:0071840 GO:0080090 GO:0097159 GO:0098813 GO:0140013 GO:1901363 GO:1903046 GO:1903506 GO:1990188 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD

Protein Analysis

338

Amino Acids

37.75

Weight (kDa)

4.99

Isoelectric Point (pI)

39.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ubiquitin_At1g33420	PF25565	3 - 61	3.1e-14	At1g33420-like, ubiquitin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002257)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66170
fragaria_vesca	FvH4_1g29990 FvH4_1g29990 FvH4_1g29990 FvH4_6g02390
malus_domestica	MD09G1267100.v1.1 MD17G1254900.v1.1 MD17G1255100.v1.1 MD17G1260200.v1.1
prunus_persica	Prupe.3G164800_v2.0.a1
pyrus_communis	pycom12401g00150 pycom461g00270
rosa_chinensis	RchiOBHm_Chr3g0450161 RchiOBHm_Chr3g0492331
rosa_laevigata	RLG00000022781 RLG00000022872 RLG00000022874 RLG00000022875 RLG00000025750
rosa_multiflora	Rmu_co8200976.1_g000001 Rmu_sc0003156.1_g000026 Rmu_sc0010184.1_g000005 Rmu_sc0010184.1_g000015 Rmu_sc0020297.1_g000001
rosa_roxburghii	Rroxscaffold_3G00226630 Rroxscaffold_6G00392410 Rroxscaffold_6G00427920
rosa_rugosa	Rorug02G0625900 Rorug03G0253300
rosa_samantha	Rh2AG397300 Rh2CG383900 Rh3AG025300 Rh3AG303200 Rh3BG025900 Rh3BG339200 Rh3BG339300 Rh3CG024800 Rh3CG336400 Rh3DG025900 Rh3DG327500 Rh3DG338500
rosa_wichuraiana	Rw3G002030 Rw3G026750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	207
AccB1I	GGYRCC	1 cut(s)	207
AccII	CGCG	1 cut(s)	300
AclWI	GGATC	2 cut(s)	402, 855
AcuI	CTGAAG	1 cut(s)	363
AdeI	CACNNNGTG	1 cut(s)	591
AfaI	GTAC	5 cut(s)	61, 209, 316, 674, 928
AfiI	CCNNNNNNNGG	2 cut(s)	331, 491
AflIII	ACRYGT	2 cut(s)	62, 239
AgsI	TTSAA	1 cut(s)	752
AjnI	CCWGG	2 cut(s)	419, 520
AleI	CACNNNNGTG	1 cut(s)	366
AluBI	AGCT	3 cut(s)	28, 41, 379
AluI	AGCT	3 cut(s)	28, 41, 379
Alw21I	GWGCWC	2 cut(s)	52, 381
Alw26I	GTCTC	1 cut(s)	954
Alw44I	GTGCAC	1 cut(s)	48
AlwI	GGATC	2 cut(s)	402, 855
Ama87I	CYCGRG	1 cut(s)	476
AoxI	GGCC	2 cut(s)	285, 937
ApaLI	GTGCAC	1 cut(s)	48
ApeKI	GCWGC	7 cut(s)	4, 7, 321, 594, 625, 947, 950
Asp718I	GGTACC	1 cut(s)	207
AsuHPI	GGTGA	5 cut(s)	100, 247, 284, 734, 800
AvaI	CYCGRG	1 cut(s)	476
BaeGI	GKGCMC	2 cut(s)	52, 857
BanI	GGYRCC	1 cut(s)	207
BanII	GRGCYC	1 cut(s)	381
BbsI	GAAGAC	1 cut(s)	566
Bbv12I	GWGCWC	2 cut(s)	52, 381
BbvI	GCAGC	5 cut(s)	308, 606, 637, 934, 937
BccI	CCATC	4 cut(s)	85, 226, 257, 274
BceAI	ACGGC	1 cut(s)	309
BciT130I	CCWGG	2 cut(s)	421, 522
BcoDI	GTCTC	1 cut(s)	954
BfmI	CTRYAG	1 cut(s)	255
BglII	AGATCT	1 cut(s)	399
BisI	GCNGC	7 cut(s)	5, 8, 322, 595, 626, 948, 951
BlsI	GCNGC	7 cut(s)	6, 9, 323, 596, 627, 949, 952
Bme1390I	CCNGG	2 cut(s)	421, 522
BmeT110I	CYCGRG	1 cut(s)	476
BmiI	GGNNCC	1 cut(s)	209
BmrFI	CCNGG	2 cut(s)	421, 522
BmsI	GCATC	3 cut(s)	328, 751, 904
BoxI	GACNNNNGTC	1 cut(s)	549
BpiI	GAAGAC	1 cut(s)	566
BpmI	CTGGAG	1 cut(s)	159
BsaBI	GATNNNNATC	1 cut(s)	95
BsaI	GGTCTC	1 cut(s)	954
BsaJI	CCNNGG	3 cut(s)	211, 325, 459
Bsc4I	CCNNNNNNNGG	2 cut(s)	331, 491
Bse3DI	GCAATG	1 cut(s)	614
Bse8I	GATNNNNATC	1 cut(s)	95
BseBI	CCWGG	2 cut(s)	421, 522
BseDI	CCNNGG	3 cut(s)	211, 325, 459
BseGI	GGATG	6 cut(s)	133, 237, 343, 766, 919, 1011
BseJI	GATNNNNATC	1 cut(s)	95
BseLI	CCNNNNNNNGG	2 cut(s)	331, 491
BseMI	GCAATG	1 cut(s)	614
BseMII	CTCAG	2 cut(s)	33, 44
BseSI	GKGCMC	2 cut(s)	52, 857
BseXI	GCAGC	5 cut(s)	308, 606, 637, 934, 937
BsgI	GTGCAG	1 cut(s)	613
Bsh1236I	CGCG	1 cut(s)	300
BshFI	GGCC	2 cut(s)	287, 939
BshNI	GGYRCC	1 cut(s)	207
BsiHKAI	GWGCWC	2 cut(s)	52, 381
BsiHKCI	CYCGRG	1 cut(s)	476
BslFI	GGGAC	1 cut(s)	908
BslI	CCNNNNNNNGG	2 cut(s)	331, 491
BsmAI	GTCTC	1 cut(s)	954
BsmFI	GGGAC	1 cut(s)	908
BsnI	GGCC	2 cut(s)	287, 939
Bso31I	GGTCTC	1 cut(s)	954
BsoBI	CYCGRG	1 cut(s)	476
Bsp1286I	GDGCHC	3 cut(s)	52, 381, 857
Bsp1407I	TGTACA	3 cut(s)	314, 672, 926
Bsp143I	GATC	3 cut(s)	394, 399, 860
Bsp19I	CCATGG	1 cut(s)	459
BspANI	GGCC	2 cut(s)	287, 939
BspCNI	CTCAG	2 cut(s)	34, 45
BspFNI	CGCG	1 cut(s)	300
BspLI	GGNNCC	1 cut(s)	209
BspPI	GGATC	2 cut(s)	402, 855
BspT107I	GGYRCC	1 cut(s)	207
BspTNI	GGTCTC	1 cut(s)	954
BsrDI	GCAATG	1 cut(s)	614
BsrGI	TGTACA	3 cut(s)	314, 672, 926
BssECI	CCNNGG	3 cut(s)	211, 325, 459
BssMI	GATC	3 cut(s)	394, 399, 860
BssT1I	CCWWGG	2 cut(s)	211, 459
Bst2UI	CCWGG	2 cut(s)	421, 522
Bst4CI	ACNGT	3 cut(s)	19, 81, 847
BstAUI	TGTACA	3 cut(s)	314, 672, 926
BstC8I	GCNNGC	4 cut(s)	12, 518, 941, 945
BstDEI	CTNAG	4 cut(s)	42, 53, 357, 812
BstDSI	CCRYGG	2 cut(s)	325, 459
BstENI	CCTNNNNNAGG	1 cut(s)	489
BstF5I	GGATG	6 cut(s)	133, 237, 343, 766, 919, 1011
BstFNI	CGCG	1 cut(s)	300
BstKTI	GATC	3 cut(s)	397, 402, 863
BstMAI	GTCTC	1 cut(s)	954
BstMBI	GATC	3 cut(s)	394, 399, 860
BstMWI	GCNNNNNNNGC	3 cut(s)	47, 526, 689
BstNI	CCWGG	2 cut(s)	421, 522
BstNSI	RCATGY	4 cut(s)	14, 66, 243, 736
BstPAI	GACNNNNGTC	1 cut(s)	549
BstSCI	CCNGG	2 cut(s)	419, 520
BstSFI	CTRYAG	1 cut(s)	255
BstSLI	GKGCMC	2 cut(s)	52, 857
BstUI	CGCG	1 cut(s)	300
BstV1I	GCAGC	5 cut(s)	308, 606, 637, 934, 937
BstV2I	GAAGAC	1 cut(s)	566
BstX2I	RGATCY	2 cut(s)	399, 860
BstYI	RGATCY	2 cut(s)	399, 860
BsuRI	GGCC	2 cut(s)	287, 939
BtgI	CCRYGG	2 cut(s)	325, 459
BtsCI	GGATG	6 cut(s)	133, 237, 343, 766, 919, 1011
BtsI	GCAGTG	1 cut(s)	317
BtsIMutI	CAGTG	2 cut(s)	50, 317
Cac8I	GCNNGC	4 cut(s)	12, 518, 941, 945
CseI	GACGC	1 cut(s)	203
Csp6I	GTAC	5 cut(s)	60, 208, 315, 673, 927
CviQI	GTAC	5 cut(s)	60, 208, 315, 673, 927
DdeI	CTNAG	4 cut(s)	42, 53, 357, 812
DpnI	GATC	3 cut(s)	396, 401, 862
DpnII	GATC	3 cut(s)	394, 399, 860
DraIII	CACNNNGTG	1 cut(s)	591
Ecl136II	GAGCTC	1 cut(s)	379
Eco130I	CCWWGG	2 cut(s)	211, 459
Eco147I	AGGCCT	1 cut(s)	939
Eco24I	GRGCYC	1 cut(s)	381
Eco31I	GGTCTC	1 cut(s)	954
Eco53kI	GAGCTC	1 cut(s)	379
Eco57I	CTGAAG	1 cut(s)	363
Eco88I	CYCGRG	1 cut(s)	476
EcoICRI	GAGCTC	1 cut(s)	379
EcoNI	CCTNNNNNAGG	1 cut(s)	489
EcoRII	CCWGG	2 cut(s)	419, 520
EcoT14I	CCWWGG	2 cut(s)	211, 459
EcoT38I	GRGCYC	1 cut(s)	381
ErhI	CCWWGG	2 cut(s)	211, 459
FaqI	GGGAC	1 cut(s)	908
FauNDI	CATATG	3 cut(s)	227, 506, 630
Fnu4HI	GCNGC	7 cut(s)	5, 8, 322, 595, 626, 948, 951
FokI	GGATG	5 cut(s)	140, 244, 350, 773, 926
FriOI	GRGCYC	1 cut(s)	381
Fsp4HI	GCNGC	7 cut(s)	5, 8, 322, 595, 626, 948, 951
GluI	GCNGC	7 cut(s)	5, 8, 322, 595, 626, 948, 951
GsuI	CTGGAG	1 cut(s)	159
HaeIII	GGCC	2 cut(s)	287, 939
HgaI	GACGC	1 cut(s)	203
HincII	GTYRAC	1 cut(s)	544
HindII	GTYRAC	1 cut(s)	544
HinfI	GANTC	2 cut(s)	113, 545
HphI	GGTGA	5 cut(s)	100, 247, 284, 734, 800
Hpy166II	GTNNAC	5 cut(s)	50, 315, 317, 544, 673
Hpy188I	TCNGA	3 cut(s)	118, 399, 865
Hpy188III	TCNNGA	3 cut(s)	138, 476, 478
Hpy8I	GTNNAC	5 cut(s)	50, 315, 317, 544, 673
HpyAV	CCTTC	3 cut(s)	341, 482, 810
HpyCH4III	ACNGT	3 cut(s)	19, 81, 847
HpyCH4IV	ACGT	1 cut(s)	405
HpyCH4V	TGCA	6 cut(s)	10, 14, 50, 594, 709, 764
HpyF10VI	GCNNNNNNNGC	3 cut(s)	47, 526, 689
HpyF3I	CTNAG	4 cut(s)	42, 53, 357, 812
HpySE526I	ACGT	1 cut(s)	405
KpnI	GGTACC	1 cut(s)	211
Kzo9I	GATC	3 cut(s)	394, 399, 860
LpnPI	CCDG	9 cut(s)	20, 123, 301, 406, 433, 498, 507, 534, 953
Lsp1109I	GCAGC	5 cut(s)	308, 606, 637, 934, 937
LweI	GCATC	3 cut(s)	328, 751, 904
MaeII	ACGT	1 cut(s)	405
MaeIII	GTNAC	1 cut(s)	235
MalI	GATC	3 cut(s)	396, 401, 862
MboI	GATC	3 cut(s)	394, 399, 860
MboII	GAAGA	4 cut(s)	356, 449, 571, 890
MflI	RGATCY	2 cut(s)	399, 860
MhlI	GDGCHC	3 cut(s)	52, 381, 857
MluCI	AATT	2 cut(s)	726, 881
MlyI	GAGTC	1 cut(s)	539
MmeI	TCCRAC	2 cut(s)	145, 759
MnlI	CCTC	9 cut(s)	48, 103, 147, 154, 167, 198, 328, 485, 929
MseI	TTAA	5 cut(s)	408, 446, 603, 830, 1012
MslI	CAYNNNNRTG	3 cut(s)	230, 244, 366
MspR9I	CCNGG	2 cut(s)	421, 522
MvaI	CCWGG	2 cut(s)	421, 522
MvnI	CGCG	1 cut(s)	300
MwoI	GCNNNNNNNGC	3 cut(s)	47, 526, 689
NcoI	CCATGG	1 cut(s)	459
NdeI	CATATG	3 cut(s)	227, 506, 630
NdeII	GATC	3 cut(s)	394, 399, 860
NlaIV	GGNNCC	1 cut(s)	209
NmuCI	GTSAC	1 cut(s)	235
NspI	RCATGY	4 cut(s)	14, 66, 243, 736
OliI	CACNNNNGTG	1 cut(s)	366
PaeI	GCATGC	1 cut(s)	14
PaeR7I	CTCGAG	1 cut(s)	476
PceI	AGGCCT	1 cut(s)	939
PciI	ACATGT	2 cut(s)	62, 239
PfeI	GAWTC	1 cut(s)	113
PkrI	GCNGC	7 cut(s)	6, 9, 323, 596, 627, 949, 952
PleI	GAGTC	1 cut(s)	539
PpsI	GAGTC	1 cut(s)	539
PscI	ACATGT	2 cut(s)	62, 239
PshAI	GACNNNNGTC	1 cut(s)	549
Psp124BI	GAGCTC	1 cut(s)	381
Psp6I	CCWGG	2 cut(s)	419, 520
PspGI	CCWGG	2 cut(s)	419, 520
PspN4I	GGNNCC	1 cut(s)	209
PsuI	RGATCY	2 cut(s)	399, 860
RsaI	GTAC	5 cut(s)	61, 209, 316, 674, 928
RsaNI	GTAC	5 cut(s)	60, 208, 315, 673, 927
RseI	CAYNNNNRTG	3 cut(s)	230, 244, 366
SacI	GAGCTC	1 cut(s)	381
SaqAI	TTAA	5 cut(s)	408, 446, 603, 830, 1012
SatI	GCNGC	7 cut(s)	5, 8, 322, 595, 626, 948, 951
Sau3AI	GATC	3 cut(s)	394, 399, 860
SchI	GAGTC	1 cut(s)	539
ScrFI	CCNGG	2 cut(s)	421, 522
SduI	GDGCHC	3 cut(s)	52, 381, 857
SfaNI	GCATC	3 cut(s)	328, 751, 904
SfcI	CTRYAG	1 cut(s)	255
Sfr274I	CTCGAG	1 cut(s)	476
SlaI	CTCGAG	1 cut(s)	476
SmiMI	CAYNNNNRTG	3 cut(s)	230, 244, 366
SmlI	CTYRAG	1 cut(s)	476
SmoI	CTYRAG	1 cut(s)	476
SphI	GCATGC	1 cut(s)	14
Sse9I	AATT	2 cut(s)	726, 881
SseBI	AGGCCT	1 cut(s)	939
SstI	GAGCTC	1 cut(s)	381
StuI	AGGCCT	1 cut(s)	939
StyD4I	CCNGG	2 cut(s)	419, 520
StyI	CCWWGG	2 cut(s)	211, 459
TaaI	ACNGT	3 cut(s)	19, 81, 847
TaiI	ACGT	1 cut(s)	408
TaqI	TCGA	3 cut(s)	152, 477, 553
TasI	AATT	2 cut(s)	726, 881
TatI	WGTACW	3 cut(s)	314, 672, 926
TfiI	GAWTC	1 cut(s)	113
Tru1I	TTAA	5 cut(s)	408, 446, 603, 830, 1012
Tru9I	TTAA	5 cut(s)	408, 446, 603, 830, 1012
TscAI	CASTG	2 cut(s)	57, 317
TseFI	GTSAC	1 cut(s)	235
TseI	GCWGC	7 cut(s)	4, 7, 321, 594, 625, 947, 950
Tsp45I	GTSAC	1 cut(s)	235
TspDTI	ATGAA	3 cut(s)	572, 665, 727
TspGWI	ACGGA	1 cut(s)	765
TspRI	CASTG	2 cut(s)	57, 317
VneI	GTGCAC	1 cut(s)	48
XagI	CCTNNNNNAGG	1 cut(s)	489
XceI	RCATGY	4 cut(s)	14, 66, 243, 736
XhoI	CTCGAG	1 cut(s)	476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.