Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0006612

Physical Location & Seq

Genomic Coordinates Reverse (-)

21650775 .. 21653249

Gene Structure 2475 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g20120.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGCGCTGCAAGATGCGCACTTTCTTCAACTCCATGGCGTCGGCGGCAGTGGCGGTGGCGGCGTTTTTGCTTCTGGGTCCGAGCACCGTCGGCAAGTCCATGGCATTTGCTTCTTCTTCTTCCGAGACCACTATGCACACTAACAATTGGGCTGTTCTGGTCTGCACCTCTCGATTCTGGTTTAATTATCGACACATGGCCAACACTTTATCCCTGTATCGGACGGTTAAGCGCCTTGGAATACCTGATGAGAGGATAATACTCATGCTGGCTGATGACATGGCCTGTAATGCTAGAAACAAGTACCCTGCTCAAGTTTTTAACAACGAGAACCACAGACTCAACTTGTATGGAGATAATGTTGAGGTGGATTATCGAGGTTATGAAGTGACGGTTGAAAACTTTTTACGTGTATTGACTGGGCGCCATGAGAATGCTGTTCCAAGATCTAAGCGTCTTTTGAGTGATGAAGGAAGCCACATCCTTTTGTATATGACAGGACATGGAGGAGATGAGTTTTTAAAATTTCAAGACTCAGAAGAGCTCCAGAGTCCTGATTTAGCAGATGCAGTTAAACAGATGAAAGAAAAGCATAGATTCAAGGAGTTGCTGATAATGGTGGACACTTGCCAAGCTGCCACTCTCTTTAATCAGCTTCAATCACCTGGAGTTTTGGCTATTGGAAGTAGCATGAAAGGAGAGAACTCATACTCGCATCACTTGGACTCAGATGTCGGTGTTTCAGTTGTGGATCGTTTTACTTTTTACACCCTTGCGTTCTTTGAGAGGCTAAATATGTACGATAATGCTTCATTGAGCAGTCTTTTCACTTCCTATAACCCAAGCTTGTTGATGTCAACCGCATACTACCGAACAGATCTATACCAGCAACACCTGGAAGAGGTATTGAAGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003923 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006497 GO:0006505 GO:0006506 GO:0006629 GO:0006643 GO:0006644 GO:0006650 GO:0006661 GO:0006664 GO:0006793 GO:0006796 GO:0006807 GO:0008104 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009059 GO:0009247 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016255 GO:0016787 GO:0019538 GO:0019637 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0032991 GO:0033036 GO:0034394 GO:0034613 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0042175 GO:0042765 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046467 GO:0046474 GO:0046486 GO:0046488 GO:0051179 GO:0051641 GO:0070727 GO:0071704 GO:0090407 GO:0098796 GO:0098827 GO:0140096 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

Peptidase_C13

Protein Analysis

306

Amino Acids

34.74

Weight (kDa)

6.36

Isoelectric Point (pI)

39.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006612)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08750 AT1G08750 AT1G08750
fragaria_vesca	FvH4_5g04770 FvH4_5g04770 FvH4_5g04770 FvH4_6g02380 FvH4_6g02380 FvH4_6g02380 FvH4_6g02400
malus_domestica	MD04G1227700.v1.1
prunus_persica	Prupe.6G347300_v2.0.a1 Prupe.6G347300_v2.0.a1
pyrus_communis	pycom04g20120
rosa_chinensis	RchiOBHm_Chr3g0450151
rosa_laevigata	RLG00000025751
rosa_multiflora	Rmu_sc0010184.1_g000006 Rmu_sc0010184.1_g000016
rosa_roxburghii	Rroxscaffold_6G00427910
rosa_rugosa	Rorug02G0625900
rosa_samantha	Rh3AG025200 Rh3BG025800 Rh3BG323000 Rh3CG024700 Rh3DG025800
rosa_wichuraiana	Rw3G002020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	731
Acc16I	TGCGCA	1 cut(s)	17
AccB1I	GGYRCC	1 cut(s)	423
AciI	CCGC	4 cut(s)	44, 53, 59, 861
AclWI	GGATC	1 cut(s)	759
AcoI	YGGCCR	1 cut(s)	198
AcsI	RAATTY	1 cut(s)	524
AcyI	GRCGYC	2 cut(s)	38, 424
AfaI	GTAC	2 cut(s)	305, 800
AfiI	CCNNNNNNNGG	2 cut(s)	219, 901
AflIII	ACRYGT	1 cut(s)	409
AgsI	TTSAA	6 cut(s)	28, 398, 530, 601, 659, 910
AjnI	CCWGG	2 cut(s)	664, 894
AluBI	AGCT	4 cut(s)	544, 635, 655, 846
AluI	AGCT	4 cut(s)	544, 635, 655, 846
Alw21I	GWGCWC	2 cut(s)	86, 546
Alw26I	GTCTC	1 cut(s)	119
AlwI	GGATC	1 cut(s)	759
AoxI	GGCC	2 cut(s)	198, 282
ApeKI	GCWGC	2 cut(s)	6, 635
ApoI	RAATTY	1 cut(s)	524
AspLEI	GCGC	4 cut(s)	6, 18, 234, 426
AspS9I	GGNCC	1 cut(s)	77
AsuHPI	GGTGA	1 cut(s)	654
AvaII	GGWCC	1 cut(s)	77
BalI	TGGCCA	1 cut(s)	200
BanI	GGYRCC	1 cut(s)	423
BanII	GRGCYC	1 cut(s)	546
Bbv12I	GWGCWC	2 cut(s)	86, 546
BbvI	GCAGC	1 cut(s)	622
BciT130I	CCWGG	2 cut(s)	666, 896
BcoDI	GTCTC	1 cut(s)	119
BfaI	CTAG	1 cut(s)	294
BfoI	RGCGCY	2 cut(s)	235, 427
BglII	AGATCT	2 cut(s)	446, 877
BisI	GCNGC	4 cut(s)	7, 45, 60, 636
BlsI	GCNGC	4 cut(s)	8, 46, 61, 637
Bme1390I	CCNGG	2 cut(s)	666, 896
Bme18I	GGWCC	1 cut(s)	77
BmgT120I	GGNCC	1 cut(s)	77
BmiI	GGNNCC	2 cut(s)	78, 425
BmrFI	CCNGG	2 cut(s)	666, 896
BmrI	ACTGGG	1 cut(s)	429
BmsI	GCATC	3 cut(s)	3, 556, 724
BmuI	ACTGGG	1 cut(s)	429
BpmI	CTGGAG	2 cut(s)	530, 687
BpuEI	CTTGAG	1 cut(s)	297
BsaAI	YACGTR	1 cut(s)	410
BsaHI	GRCGYC	2 cut(s)	38, 424
BsaI	GGTCTC	1 cut(s)	119
BsaJI	CCNNGG	3 cut(s)	33, 99, 235
BsaXI	ACNNNNNCTCC	2 cut(s)	345, 375
Bsc4I	CCNNNNNNNGG	2 cut(s)	219, 901
Bse1I	ACTGG	1 cut(s)	424
BseBI	CCWGG	2 cut(s)	666, 896
BseDI	CCNNGG	3 cut(s)	33, 99, 235
BseGI	GGATG	1 cut(s)	480
BseLI	CCNNNNNNNGG	2 cut(s)	219, 901
BseMII	CTCAG	2 cut(s)	549, 741
BseNI	ACTGG	1 cut(s)	424
BseRI	GAGGAG	1 cut(s)	522
BseXI	GCAGC	1 cut(s)	622
BsgI	GTGCAG	1 cut(s)	148
BshFI	GGCC	2 cut(s)	200, 284
BshNI	GGYRCC	1 cut(s)	423
BsiHKAI	GWGCWC	2 cut(s)	86, 546
BslI	CCNNNNNNNGG	2 cut(s)	219, 901
BsmAI	GTCTC	1 cut(s)	119
BsmI	GAATGC	1 cut(s)	439
BsnI	GGCC	2 cut(s)	200, 284
Bso31I	GGTCTC	1 cut(s)	119
Bsp1286I	GDGCHC	2 cut(s)	86, 546
Bsp143I	GATC	3 cut(s)	446, 751, 877
Bsp19I	CCATGG	2 cut(s)	33, 99
BspACI	CCGC	4 cut(s)	44, 53, 59, 861
BspANI	GGCC	2 cut(s)	200, 284
BspCNI	CTCAG	2 cut(s)	548, 740
BspLI	GGNNCC	2 cut(s)	78, 425
BspPI	GGATC	1 cut(s)	759
BspQI	GCTCTTC	1 cut(s)	534
BspT107I	GGYRCC	1 cut(s)	423
BspTNI	GGTCTC	1 cut(s)	119
BsrI	ACTGG	1 cut(s)	424
BssECI	CCNNGG	3 cut(s)	33, 99, 235
BssMI	GATC	3 cut(s)	446, 751, 877
BssNI	GRCGYC	2 cut(s)	38, 424
BssT1I	CCWWGG	3 cut(s)	33, 99, 235
Bst2UI	CCWGG	2 cut(s)	666, 896
Bst4CI	ACNGT	3 cut(s)	88, 226, 394
Bst6I	CTCTTC	2 cut(s)	534, 894
BstACI	GRCGYC	2 cut(s)	38, 424
BstBAI	YACGTR	1 cut(s)	410
BstC8I	GCNNGC	1 cut(s)	270
BstDEI	CTNAG	3 cut(s)	450, 535, 727
BstDSI	CCRYGG	2 cut(s)	33, 99
BstENI	CCTNNNNNAGG	1 cut(s)	899
BstF5I	GGATG	1 cut(s)	480
BstH2I	RGCGCY	2 cut(s)	235, 427
BstHHI	GCGC	4 cut(s)	6, 18, 234, 426
BstKTI	GATC	3 cut(s)	449, 754, 880
BstMAI	GTCTC	1 cut(s)	119
BstMBI	GATC	3 cut(s)	446, 751, 877
BstMWI	GCNNNNNNNGC	6 cut(s)	15, 44, 50, 59, 90, 290
BstNI	CCWGG	2 cut(s)	666, 896
BstSCI	CCNGG	2 cut(s)	664, 894
BstV1I	GCAGC	1 cut(s)	622
BstX2I	RGATCY	2 cut(s)	446, 877
BstYI	RGATCY	2 cut(s)	446, 877
BsuRI	GGCC	2 cut(s)	200, 284
BtgI	CCRYGG	2 cut(s)	33, 99
BtsCI	GGATG	1 cut(s)	480
BtsI	GCAGTG	1 cut(s)	54
BtsIMutI	CAGTG	1 cut(s)	54
Cac8I	GCNNGC	1 cut(s)	270
CfoI	GCGC	4 cut(s)	6, 18, 234, 426
Cfr13I	GGNCC	1 cut(s)	77
CseI	GACGC	2 cut(s)	27, 443
Csp6I	GTAC	2 cut(s)	304, 799
CviAII	CATG	8 cut(s)	34, 100, 196, 265, 280, 428, 503, 691
CviQI	GTAC	2 cut(s)	304, 799
DdeI	CTNAG	3 cut(s)	450, 535, 727
DinI	GGCGCC	1 cut(s)	425
DpnI	GATC	3 cut(s)	448, 753, 879
DpnII	GATC	3 cut(s)	446, 751, 877
DraI	TTTAAA	1 cut(s)	522
DrdI	GACNNNNNNGTC	1 cut(s)	731
DseDI	GACNNNNNNGTC	1 cut(s)	731
EaeI	YGGCCR	1 cut(s)	198
Eam1104I	CTCTTC	2 cut(s)	534, 894
EarI	CTCTTC	2 cut(s)	534, 894
Ecl136II	GAGCTC	1 cut(s)	544
Eco130I	CCWWGG	3 cut(s)	33, 99, 235
Eco24I	GRGCYC	1 cut(s)	546
Eco31I	GGTCTC	1 cut(s)	119
Eco47I	GGWCC	1 cut(s)	77
Eco53kI	GAGCTC	1 cut(s)	544
EcoICRI	GAGCTC	1 cut(s)	544
EcoNI	CCTNNNNNAGG	1 cut(s)	899
EcoRII	CCWGG	2 cut(s)	664, 894
EcoT14I	CCWWGG	3 cut(s)	33, 99, 235
EcoT38I	GRGCYC	1 cut(s)	546
EgeI	GGCGCC	1 cut(s)	425
EheI	GGCGCC	1 cut(s)	425
ErhI	CCWWGG	3 cut(s)	33, 99, 235
FaeI	CATG	8 cut(s)	37, 103, 199, 268, 283, 431, 506, 694
FatI	CATG	8 cut(s)	33, 99, 195, 264, 279, 427, 502, 690
Fnu4HI	GCNGC	4 cut(s)	7, 45, 60, 636
FokI	GGATG	1 cut(s)	467
FriOI	GRGCYC	1 cut(s)	546
Fsp4HI	GCNGC	4 cut(s)	7, 45, 60, 636
FspAI	RTGCGCAY	1 cut(s)	17
FspBI	CTAG	1 cut(s)	294
FspI	TGCGCA	1 cut(s)	17
GlaI	GCGC	4 cut(s)	5, 17, 233, 425
GluI	GCNGC	4 cut(s)	7, 45, 60, 636
GsuI	CTGGAG	2 cut(s)	530, 687
HaeII	RGCGCY	2 cut(s)	235, 427
HaeIII	GGCC	2 cut(s)	200, 284
HgaI	GACGC	2 cut(s)	27, 443
HhaI	GCGC	4 cut(s)	6, 18, 234, 426
Hin1I	GRCGYC	2 cut(s)	38, 424
Hin1II	CATG	8 cut(s)	37, 103, 199, 268, 283, 431, 506, 694
Hin6I	GCGC	4 cut(s)	4, 16, 232, 424
HinP1I	GCGC	4 cut(s)	4, 16, 232, 424
HincII	GTYRAC	1 cut(s)	858
HindII	GTYRAC	1 cut(s)	858
HindIII	AAGCTT	1 cut(s)	844
HinfI	GANTC	6 cut(s)	174, 339, 533, 550, 597, 725
HphI	GGTGA	1 cut(s)	654
Hpy166II	GTNNAC	2 cut(s)	622, 858
Hpy188I	TCNGA	5 cut(s)	81, 124, 222, 538, 730
Hpy188III	TCNNGA	4 cut(s)	171, 530, 547, 554
Hpy8I	GTNNAC	2 cut(s)	622, 858
Hpy99I	CGWCG	2 cut(s)	43, 92
HpyAV	CCTTC	1 cut(s)	464
HpyCH4III	ACNGT	3 cut(s)	88, 226, 394
HpyCH4IV	ACGT	1 cut(s)	409
HpyCH4V	TGCA	4 cut(s)	9, 136, 165, 569
HpyF10VI	GCNNNNNNNGC	6 cut(s)	15, 44, 50, 59, 90, 290
HpyF3I	CTNAG	3 cut(s)	450, 535, 727
HpySE526I	ACGT	1 cut(s)	409
Hsp92I	GRCGYC	2 cut(s)	38, 424
Hsp92II	CATG	8 cut(s)	37, 103, 199, 268, 283, 431, 506, 694
HspAI	GCGC	4 cut(s)	4, 16, 232, 424
KasI	GGCGCC	1 cut(s)	423
Kzo9I	GATC	3 cut(s)	446, 751, 877
LguI	GCTCTTC	1 cut(s)	534
LmnI	GCTCC	1 cut(s)	549
Lsp1109I	GCAGC	1 cut(s)	622
LweI	GCATC	3 cut(s)	3, 556, 724
MaeI	CTAG	1 cut(s)	294
MaeII	ACGT	1 cut(s)	409
MaeIII	GTNAC	1 cut(s)	388
MalI	GATC	3 cut(s)	448, 753, 879
MboI	GATC	3 cut(s)	446, 751, 877
MboII	GAAGA	6 cut(s)	16, 105, 108, 111, 551, 911
MfeI	CAATTG	1 cut(s)	145
MflI	RGATCY	2 cut(s)	446, 877
MhlI	GDGCHC	2 cut(s)	86, 546
MlsI	TGGCCA	1 cut(s)	200
MluCI	AATT	3 cut(s)	145, 184, 524
MluNI	TGGCCA	1 cut(s)	200
Mly113I	GGCGCC	1 cut(s)	424
MlyI	GAGTC	4 cut(s)	333, 527, 559, 719
MnlI	CCTC	7 cut(s)	178, 246, 358, 371, 500, 780, 895
Mox20I	TGGCCA	1 cut(s)	200
MscI	TGGCCA	1 cut(s)	200
MseI	TTAA	6 cut(s)	183, 228, 321, 521, 573, 648
MslI	CAYNNNNRTG	1 cut(s)	432
Msp20I	TGGCCA	1 cut(s)	200
MspR9I	CCNGG	2 cut(s)	666, 896
MunI	CAATTG	1 cut(s)	145
Mva1269I	GAATGC	1 cut(s)	439
MvaI	CCWGG	2 cut(s)	666, 896
MwoI	GCNNNNNNNGC	6 cut(s)	15, 44, 50, 59, 90, 290
NarI	GGCGCC	1 cut(s)	424
NcoI	CCATGG	2 cut(s)	33, 99
NdeII	GATC	3 cut(s)	446, 751, 877
NlaIII	CATG	8 cut(s)	37, 103, 199, 268, 283, 431, 506, 694
NlaIV	GGNNCC	2 cut(s)	78, 425
NmuCI	GTSAC	1 cut(s)	388
NsbI	TGCGCA	1 cut(s)	17
PciSI	GCTCTTC	1 cut(s)	534
PctI	GAATGC	1 cut(s)	439
PfeI	GAWTC	2 cut(s)	174, 597
PkrI	GCNGC	4 cut(s)	8, 46, 61, 637
PleI	GAGTC	4 cut(s)	333, 527, 558, 719
PluTI	GGCGCC	1 cut(s)	427
PpsI	GAGTC	4 cut(s)	333, 527, 558, 719
Ppu21I	YACGTR	1 cut(s)	410
Psp124BI	GAGCTC	1 cut(s)	546
Psp6I	CCWGG	2 cut(s)	664, 894
PspGI	CCWGG	2 cut(s)	664, 894
PspN4I	GGNNCC	2 cut(s)	78, 425
PspPI	GGNCC	1 cut(s)	77
PsuI	RGATCY	2 cut(s)	446, 877
RsaI	GTAC	2 cut(s)	305, 800
RsaNI	GTAC	2 cut(s)	304, 799
RseI	CAYNNNNRTG	1 cut(s)	432
SacI	GAGCTC	1 cut(s)	546
SapI	GCTCTTC	1 cut(s)	534
SaqAI	TTAA	6 cut(s)	183, 228, 321, 521, 573, 648
SatI	GCNGC	4 cut(s)	7, 45, 60, 636
Sau3AI	GATC	3 cut(s)	446, 751, 877
Sau96I	GGNCC	1 cut(s)	77
SchI	GAGTC	4 cut(s)	333, 527, 559, 719
ScrFI	CCNGG	2 cut(s)	666, 896
SduI	GDGCHC	2 cut(s)	86, 546
SfaNI	GCATC	3 cut(s)	3, 556, 724
SfoI	GGCGCC	1 cut(s)	425
SinI	GGWCC	1 cut(s)	77
SmiMI	CAYNNNNRTG	1 cut(s)	432
SmlI	CTYRAG	1 cut(s)	312
SmoI	CTYRAG	1 cut(s)	312
Sse9I	AATT	3 cut(s)	145, 184, 524
SsiI	CCGC	4 cut(s)	44, 53, 59, 861
SspDI	GGCGCC	1 cut(s)	423
SspMI	CTAG	1 cut(s)	294
SstI	GAGCTC	1 cut(s)	546
StyD4I	CCNGG	2 cut(s)	664, 894
StyI	CCWWGG	3 cut(s)	33, 99, 235
TaaI	ACNGT	3 cut(s)	88, 226, 394
TaiI	ACGT	1 cut(s)	412
TaqI	TCGA	3 cut(s)	172, 190, 376
TasI	AATT	3 cut(s)	145, 184, 524
TauI	GCSGC	2 cut(s)	47, 62
TfiI	GAWTC	2 cut(s)	174, 597
Tru1I	TTAA	6 cut(s)	183, 228, 321, 521, 573, 648
Tru9I	TTAA	6 cut(s)	183, 228, 321, 521, 573, 648
TscAI	CASTG	1 cut(s)	54
TseFI	GTSAC	1 cut(s)	388
TseI	GCWGC	2 cut(s)	6, 635
Tsp45I	GTSAC	1 cut(s)	388
TspDTI	ATGAA	5 cut(s)	399, 483, 596, 707, 801
TspRI	CASTG	1 cut(s)	54
VpaK11BI	GGWCC	1 cut(s)	77
XagI	CCTNNNNNAGG	1 cut(s)	899
XapI	RAATTY	1 cut(s)	524
XspI	CTAG	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.