Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010184.1

Orthogroup ID

OG0006612

Physical Location & Seq

Genomic Coordinates Forward (+)

25649 .. 27421

Gene Structure 1773 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010184.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

atgcgcttcaagatgtgcaatttgctcaattgggtagtgattatggctgcgtttctggttctgggttcgatcaatgtctacgcatttggttctacttcttcttcttcttcagagaccaccatgcacactaacaattgggctgttctggtctgcacctctcgcttctggtttaattatcgacacatggccaatactttatccctgtacaggacggttaagcgacttggaatacctgatgagaggataatacttatgctggcagatgacatggcctgtaatgctagaaacaagtaccctgcccaagtttttaataatgaaaaccacagacttaacttgtatggagataatgttgaggtagattatcgaggttatgaagtgacagttgaaaattttttacatgtattaactgggcgccatgagactgctgttccaagatcgaagcgtcttttaagtgataaaggaagccacattcttttgtatatgattggacatggaggagacgagtttttaaaatttcaagactcagaagagctccagagtcatgatttagctgatgctgtgaaacaaatgaaagaaaagcataggttcaaggagctgctgataatggtggacacttgccaagctgccaccctcttctctcaggtttgtgatctgctcctaccaatgcatgaatcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003923 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006497 GO:0006505 GO:0006506 GO:0006629 GO:0006643 GO:0006644 GO:0006650 GO:0006661 GO:0006664 GO:0006793 GO:0006796 GO:0006807 GO:0008104 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009059 GO:0009247 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016255 GO:0016787 GO:0019538 GO:0019637 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0032991 GO:0033036 GO:0034394 GO:0034613 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0042175 GO:0042765 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046467 GO:0046474 GO:0046486 GO:0046488 GO:0051179 GO:0051641 GO:0070727 GO:0071704 GO:0090407 GO:0098796 GO:0098827 GO:0140096 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

Peptidase_C13

Protein Analysis

225

Amino Acids

25.89

Weight (kDa)

6.54

Isoelectric Point (pI)

38.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006612)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08750 AT1G08750 AT1G08750
fragaria_vesca	FvH4_5g04770 FvH4_5g04770 FvH4_5g04770 FvH4_6g02380 FvH4_6g02380 FvH4_6g02380 FvH4_6g02400
malus_domestica	MD04G1227700.v1.1
prunus_persica	Prupe.6G347300_v2.0.a1 Prupe.6G347300_v2.0.a1
pyrus_communis	pycom04g20120
rosa_chinensis	RchiOBHm_Chr3g0450151
rosa_laevigata	RLG00000025751
rosa_multiflora	Rmu_sc0010184.1_g000006 Rmu_sc0010184.1_g000016
rosa_roxburghii	Rroxscaffold_6G00427910
rosa_rugosa	Rorug02G0625900
rosa_samantha	Rh3AG025200 Rh3BG025800 Rh3BG323000 Rh3CG024700 Rh3DG025800
rosa_wichuraiana	Rw3G002020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	411
AccI	GTMKAC	1 cut(s)	78
AcoI	YGGCCR	1 cut(s)	186
AcsI	RAATTY	2 cut(s)	388, 512
AcuI	CTGAAG	1 cut(s)	93
AcyI	GRCGYC	1 cut(s)	412
AfaI	GTAC	2 cut(s)	206, 293
AfiI	CCNNNNNNNGG	1 cut(s)	207
AflIII	ACRYGT	1 cut(s)	397
AgsI	TTSAA	4 cut(s)	10, 386, 518, 589
AluBI	AGCT	4 cut(s)	532, 551, 595, 623
AluI	AGCT	4 cut(s)	532, 551, 595, 623
Alw21I	GWGCWC	1 cut(s)	534
Alw26I	GTCTC	3 cut(s)	107, 413, 492
AoxI	GGCC	2 cut(s)	186, 270
ApeKI	GCWGC	3 cut(s)	47, 595, 623
ApoI	RAATTY	2 cut(s)	388, 512
AspLEI	GCGC	2 cut(s)	6, 414
BalI	TGGCCA	1 cut(s)	188
BanI	GGYRCC	1 cut(s)	411
BanII	GRGCYC	1 cut(s)	534
Bbv12I	GWGCWC	1 cut(s)	534
BbvI	GCAGC	3 cut(s)	34, 582, 610
BcoDI	GTCTC	3 cut(s)	107, 413, 492
BfaI	CTAG	2 cut(s)	282, 676
BfoI	RGCGCY	1 cut(s)	415
BisI	GCNGC	3 cut(s)	48, 596, 624
BlsI	GCNGC	3 cut(s)	49, 597, 625
BmiI	GGNNCC	1 cut(s)	413
BmrI	ACTGGG	1 cut(s)	417
BmsI	GCATC	1 cut(s)	544
BmuI	ACTGGG	1 cut(s)	417
BpmI	CTGGAG	1 cut(s)	518
BsaHI	GRCGYC	1 cut(s)	412
BsaI	GGTCTC	1 cut(s)	107
BsaXI	ACNNNNNCTCC	2 cut(s)	333, 363
Bsc4I	CCNNNNNNNGG	1 cut(s)	207
Bse1I	ACTGG	1 cut(s)	412
BseLI	CCNNNNNNNGG	1 cut(s)	207
BseMII	CTCAG	2 cut(s)	537, 653
BseNI	ACTGG	1 cut(s)	412
BseRI	GAGGAG	1 cut(s)	510
BseXI	GCAGC	3 cut(s)	34, 582, 610
BsgI	GTGCAG	1 cut(s)	136
BshFI	GGCC	2 cut(s)	188, 272
BshNI	GGYRCC	1 cut(s)	411
BsiHKAI	GWGCWC	1 cut(s)	534
BslI	CCNNNNNNNGG	1 cut(s)	207
BsmAI	GTCTC	3 cut(s)	107, 413, 492
BsmBI	CGTCTC	1 cut(s)	492
BsnI	GGCC	2 cut(s)	188, 272
Bso31I	GGTCTC	1 cut(s)	107
Bsp1286I	GDGCHC	1 cut(s)	534
Bsp1407I	TGTACA	1 cut(s)	204
Bsp143I	GATC	3 cut(s)	69, 434, 649
BspANI	GGCC	2 cut(s)	188, 272
BspCNI	CTCAG	2 cut(s)	536, 652
BspHI	TCATGA	1 cut(s)	541
BspLI	GGNNCC	1 cut(s)	413
BspQI	GCTCTTC	1 cut(s)	522
BspT107I	GGYRCC	1 cut(s)	411
BspTNI	GGTCTC	1 cut(s)	107
BsrGI	TGTACA	1 cut(s)	204
BsrI	ACTGG	1 cut(s)	412
BssMI	GATC	3 cut(s)	69, 434, 649
BssNI	GRCGYC	1 cut(s)	412
Bst4CI	ACNGT	2 cut(s)	214, 382
Bst6I	CTCTTC	2 cut(s)	522, 638
BstACI	GRCGYC	1 cut(s)	412
BstAUI	TGTACA	1 cut(s)	204
BstC8I	GCNNGC	1 cut(s)	258
BstDEI	CTNAG	2 cut(s)	523, 639
BstH2I	RGCGCY	1 cut(s)	415
BstHHI	GCGC	2 cut(s)	6, 414
BstKTI	GATC	3 cut(s)	72, 437, 652
BstMAI	GTCTC	3 cut(s)	107, 413, 492
BstMBI	GATC	3 cut(s)	69, 434, 649
BstMWI	GCNNNNNNNGC	2 cut(s)	159, 278
BstNSI	RCATGY	1 cut(s)	401
BstV1I	GCAGC	3 cut(s)	34, 582, 610
BsuRI	GGCC	2 cut(s)	188, 272
Cac8I	GCNNGC	1 cut(s)	258
CciI	TCATGA	1 cut(s)	541
CfoI	GCGC	2 cut(s)	6, 414
CseI	GACGC	1 cut(s)	431
Csp6I	GTAC	2 cut(s)	205, 292
CviAII	CATG	8 cut(s)	121, 184, 268, 398, 416, 491, 542, 668
CviJI	RGCY	9 cut(s)	47, 140, 188, 272, 465, 532, 551, 595, 623
CviKI_1	RGCY	9 cut(s)	47, 140, 188, 272, 465, 532, 551, 595, 623
CviQI	GTAC	2 cut(s)	205, 292
DdeI	CTNAG	2 cut(s)	523, 639
DinI	GGCGCC	1 cut(s)	413
DpnI	GATC	3 cut(s)	71, 436, 651
DpnII	GATC	3 cut(s)	69, 434, 649
DraI	TTTAAA	1 cut(s)	510
EaeI	YGGCCR	1 cut(s)	186
Eam1104I	CTCTTC	2 cut(s)	522, 638
EarI	CTCTTC	2 cut(s)	522, 638
Ecl136II	GAGCTC	1 cut(s)	532
Eco24I	GRGCYC	1 cut(s)	534
Eco31I	GGTCTC	1 cut(s)	107
Eco53kI	GAGCTC	1 cut(s)	532
Eco57I	CTGAAG	1 cut(s)	93
EcoICRI	GAGCTC	1 cut(s)	532
EcoT22I	ATGCAT	1 cut(s)	669
EcoT38I	GRGCYC	1 cut(s)	534
EgeI	GGCGCC	1 cut(s)	413
EheI	GGCGCC	1 cut(s)	413
Esp3I	CGTCTC	1 cut(s)	492
FaeI	CATG	8 cut(s)	124, 187, 271, 401, 419, 494, 545, 671
FatI	CATG	8 cut(s)	120, 183, 267, 397, 415, 490, 541, 667
FblI	GTMKAC	1 cut(s)	78
Fnu4HI	GCNGC	3 cut(s)	48, 596, 624
FriOI	GRGCYC	1 cut(s)	534
Fsp4HI	GCNGC	3 cut(s)	48, 596, 624
FspBI	CTAG	2 cut(s)	282, 676
GlaI	GCGC	2 cut(s)	5, 413
GluI	GCNGC	3 cut(s)	48, 596, 624
GsuI	CTGGAG	1 cut(s)	518
HaeII	RGCGCY	1 cut(s)	415
HaeIII	GGCC	2 cut(s)	188, 272
HgaI	GACGC	1 cut(s)	431
HhaI	GCGC	2 cut(s)	6, 414
Hin1I	GRCGYC	1 cut(s)	412
Hin1II	CATG	8 cut(s)	124, 187, 271, 401, 419, 494, 545, 671
Hin6I	GCGC	2 cut(s)	4, 412
HinP1I	GCGC	2 cut(s)	4, 412
HinfI	GANTC	3 cut(s)	521, 538, 671
Hpy166II	GTNNAC	2 cut(s)	79, 610
Hpy188I	TCNGA	2 cut(s)	112, 526
Hpy188III	TCNNGA	4 cut(s)	10, 518, 535, 542
Hpy8I	GTNNAC	2 cut(s)	79, 610
HpyCH4III	ACNGT	2 cut(s)	214, 382
HpyCH4V	TGCA	4 cut(s)	18, 124, 153, 667
HpyF10VI	GCNNNNNNNGC	2 cut(s)	159, 278
HpyF3I	CTNAG	2 cut(s)	523, 639
Hsp92I	GRCGYC	1 cut(s)	412
Hsp92II	CATG	8 cut(s)	124, 187, 271, 401, 419, 494, 545, 671
HspAI	GCGC	2 cut(s)	4, 412
KasI	GGCGCC	1 cut(s)	411
Kzo9I	GATC	3 cut(s)	69, 434, 649
LguI	GCTCTTC	1 cut(s)	522
LmnI	GCTCC	3 cut(s)	537, 592, 660
Lsp1109I	GCAGC	3 cut(s)	34, 582, 610
LweI	GCATC	1 cut(s)	544
MaeI	CTAG	2 cut(s)	282, 676
MaeIII	GTNAC	1 cut(s)	376
MalI	GATC	3 cut(s)	71, 436, 651
MboI	GATC	3 cut(s)	69, 434, 649
MboII	GAAGA	6 cut(s)	90, 93, 96, 99, 539, 625
MfeI	CAATTG	2 cut(s)	28, 133
MhlI	GDGCHC	1 cut(s)	534
MlsI	TGGCCA	1 cut(s)	188
MluCI	AATT	6 cut(s)	19, 28, 133, 172, 388, 512
MluNI	TGGCCA	1 cut(s)	188
Mly113I	GGCGCC	1 cut(s)	412
MlyI	GAGTC	2 cut(s)	515, 547
MnlI	CCTC	6 cut(s)	166, 234, 346, 359, 488, 641
Mox20I	TGGCCA	1 cut(s)	188
Mph1103I	ATGCAT	1 cut(s)	669
MscI	TGGCCA	1 cut(s)	188
MseI	TTAA	7 cut(s)	171, 216, 309, 330, 404, 449, 509
Msp20I	TGGCCA	1 cut(s)	188
MunI	CAATTG	2 cut(s)	28, 133
MwoI	GCNNNNNNNGC	2 cut(s)	159, 278
NarI	GGCGCC	1 cut(s)	412
NdeII	GATC	3 cut(s)	69, 434, 649
NlaIII	CATG	8 cut(s)	124, 187, 271, 401, 419, 494, 545, 671
NlaIV	GGNNCC	1 cut(s)	413
NmuCI	GTSAC	1 cut(s)	376
NsiI	ATGCAT	1 cut(s)	669
NspI	RCATGY	1 cut(s)	401
PagI	TCATGA	1 cut(s)	541
PciI	ACATGT	1 cut(s)	397
PciSI	GCTCTTC	1 cut(s)	522
PfeI	GAWTC	1 cut(s)	671
PkrI	GCNGC	3 cut(s)	49, 597, 625
PleI	GAGTC	2 cut(s)	515, 546
PluTI	GGCGCC	1 cut(s)	415
PpsI	GAGTC	2 cut(s)	515, 546
PscI	ACATGT	1 cut(s)	397
Psp124BI	GAGCTC	1 cut(s)	534
PspN4I	GGNNCC	1 cut(s)	413
RsaI	GTAC	2 cut(s)	206, 293
RsaNI	GTAC	2 cut(s)	205, 292
SacI	GAGCTC	1 cut(s)	534
SapI	GCTCTTC	1 cut(s)	522
SaqAI	TTAA	7 cut(s)	171, 216, 309, 330, 404, 449, 509
SatI	GCNGC	3 cut(s)	48, 596, 624
Sau3AI	GATC	3 cut(s)	69, 434, 649
SchI	GAGTC	2 cut(s)	515, 547
SduI	GDGCHC	1 cut(s)	534
SfaNI	GCATC	1 cut(s)	544
SfoI	GGCGCC	1 cut(s)	413
Sse9I	AATT	6 cut(s)	19, 28, 133, 172, 388, 512
SspDI	GGCGCC	1 cut(s)	411
SspMI	CTAG	2 cut(s)	282, 676
SstI	GAGCTC	1 cut(s)	534
TaaI	ACNGT	2 cut(s)	214, 382
TaqI	TCGA	4 cut(s)	68, 178, 364, 437
TasI	AATT	6 cut(s)	19, 28, 133, 172, 388, 512
TatI	WGTACW	1 cut(s)	204
TfiI	GAWTC	1 cut(s)	671
Tru1I	TTAA	7 cut(s)	171, 216, 309, 330, 404, 449, 509
Tru9I	TTAA	7 cut(s)	171, 216, 309, 330, 404, 449, 509
TseFI	GTSAC	1 cut(s)	376
TseI	GCWGC	3 cut(s)	47, 595, 623
Tsp45I	GTSAC	1 cut(s)	376
TspDTI	ATGAA	3 cut(s)	330, 387, 584
XapI	RAATTY	2 cut(s)	388, 512
XceI	RCATGY	1 cut(s)	401
XmiI	GTMKAC	1 cut(s)	78
XspI	CTAG	2 cut(s)	282, 676
Zsp2I	ATGCAT	1 cut(s)	669

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.