Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0006612

Physical Location & Seq

Genomic Coordinates Forward (+)

48074125 .. 48078030

Gene Structure 3906 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025751

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

ATGCGGTTCAAGATTTGCAATTTGTTCAATTGGGTATTGGTTGTTGCTGCGTTTTTGGTTCCGGGTTCGATCAATGTCTACGCATTTGGTTCTCCTTCTTCTTCTTCAGAGACCACTATGCACACTAACAATTGGGCTGTTCTGGTCTGCACCTCTCGCTTCTGGTTTAATTATCGACACATGGCGAATACTTTATCCCTGTACAGGACGGTTAAGCGACTTGGAATACCTGATGAGAGGATAATACTTATGCTGGCAGATGACATGGCCTGTAATGCTAGAAACAAGTACCCTGCCCAAGTTTTTAATAATGAAAACCACAGACTCAACTTGTATGGAGATAATGTTGAGGTAGATTATCGAGGTTATGAAGTGACGGTTGAAAATTTTTTACGTGTATTAACTGGGCGCCATGAGACTGCTGTTCCAAGATCTAAGCGTCTTTTAAGTGATGAAGGAAGCCACATTCTTTTGTATATGACCGGACATGGAGGAGATGAGTTTTTAAAATTTCAAGACTCAGAAGAGCTCCAGAGTCATGATTTAGCTGATGCTGTGAAACAAATGAAAGAAAAGCGTAGGTTCAAGGAGCTGCTGATAATGGTGGACACTTGCCAAGCTGCCACTCTCTTCTCTCAGCTTCAATCACCGGGTGTTTTGGCTATTGGAAGTAGCATGAAAGGAGAAAATTCATACTCGCATCACTTGGACTCTGATGTTGGTGTCTCTGTTGTGGATCGTTTTACATTTTACACTCTTGCATTCTTTGAGAGGCTAAATATGTATGACAATGCTTCCGTGAGCAGTCTATTTAATTCGTATCACCCGAGCTTGTTGATGTCAACTGCATATTACCGAACAGATCTATACCAGCGTCGCCTTGAAGAGGTACCTGTGACAAACTTCTTTGGATCAGTCATGGAAACAATACATACTGATTCAGCTTATAAAGCCCTTTCAAGGAAAAGTAACAGCAGAGCTGAAATCAATACGCCCTTTGATCAGTCAGCCAATGCCGATAAAAGAACTTTGGCAGATTCAAATGGTCAGGATCAATTCAGTGACCTGAAAAAAGAGGATCAACAAGGTGCTTTCAGACATTTGTGGAACACGTTGAATGACAAGGTCGGAAAAATTGAAGATGTGGATTCGTTTGTGCAGTACGGTTTGCTAGCCATGGTTCCACTATTGCTACTTCCCACATGGTTATCGCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003923 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006497 GO:0006505 GO:0006506 GO:0006629 GO:0006643 GO:0006644 GO:0006650 GO:0006661 GO:0006664 GO:0006793 GO:0006796 GO:0006807 GO:0008104 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009059 GO:0009247 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016255 GO:0016787 GO:0019538 GO:0019637 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0032991 GO:0033036 GO:0034394 GO:0034613 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0042175 GO:0042765 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046467 GO:0046474 GO:0046486 GO:0046488 GO:0051179 GO:0051641 GO:0070727 GO:0071704 GO:0090407 GO:0098796 GO:0098827 GO:0140096 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

Peptidase_C13

Protein Analysis

406

Amino Acids

46.28

Weight (kDa)

6.19

Isoelectric Point (pI)

43.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C13	PF01650	44 - 258	4.2e-45	Peptidase C13 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006612)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08750 AT1G08750 AT1G08750
fragaria_vesca	FvH4_5g04770 FvH4_5g04770 FvH4_5g04770 FvH4_6g02380 FvH4_6g02380 FvH4_6g02380 FvH4_6g02400
malus_domestica	MD04G1227700.v1.1
prunus_persica	Prupe.6G347300_v2.0.a1 Prupe.6G347300_v2.0.a1
pyrus_communis	pycom04g20120
rosa_chinensis	RchiOBHm_Chr3g0450151
rosa_laevigata	RLG00000025751
rosa_multiflora	Rmu_sc0010184.1_g000006 Rmu_sc0010184.1_g000016
rosa_roxburghii	Rroxscaffold_6G00427910
rosa_rugosa	Rorug02G0625900
rosa_samantha	Rh3AG025200 Rh3BG025800 Rh3BG323000 Rh3CG024700 Rh3DG025800
rosa_wichuraiana	Rw3G002020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	948
Acc65I	GGTACC	1 cut(s)	889
AccB1I	GGYRCC	2 cut(s)	408, 889
AccI	GTMKAC	1 cut(s)	78
AccII	CGCG	1 cut(s)	1213
AciI	CCGC	2 cut(s)	4, 1213
AclWI	GGATC	4 cut(s)	744, 919, 1059, 1086
AcsI	RAATTY	3 cut(s)	385, 509, 688
AcuI	CTGAAG	1 cut(s)	90
AcyI	GRCGYC	1 cut(s)	409
AdeI	CACNNNGTG	1 cut(s)	653
AfaI	GTAC	4 cut(s)	203, 290, 891, 1163
AfiI	CCNNNNNNNGG	3 cut(s)	204, 886, 960
AflIII	ACRYGT	2 cut(s)	394, 1110
AluBI	AGCT	8 cut(s)	529, 548, 592, 620, 640, 831, 944, 980
AluI	AGCT	8 cut(s)	529, 548, 592, 620, 640, 831, 944, 980
Alw21I	GWGCWC	1 cut(s)	531
Alw26I	GTCTC	3 cut(s)	104, 410, 730
AlwI	GGATC	4 cut(s)	744, 919, 1059, 1086
Ama87I	CYCGRG	1 cut(s)	826
AoxI	GGCC	1 cut(s)	267
ApeKI	GCWGC	3 cut(s)	47, 592, 620
ApoI	RAATTY	3 cut(s)	385, 509, 688
Asp718I	GGTACC	1 cut(s)	889
AspLEI	GCGC	1 cut(s)	411
AsuC2I	CCSGG	2 cut(s)	63, 651
AsuHPI	GGTGA	2 cut(s)	639, 815
AsuNHI	GCTAGC	1 cut(s)	1171
AvaI	CYCGRG	1 cut(s)	826
BanI	GGYRCC	2 cut(s)	408, 889
BanII	GRGCYC	1 cut(s)	531
Bbv12I	GWGCWC	1 cut(s)	531
BbvI	GCAGC	3 cut(s)	34, 579, 607
BclI	TGATCA	1 cut(s)	1000
BcnI	CCSGG	2 cut(s)	63, 651
BcoDI	GTCTC	3 cut(s)	104, 410, 730
BfaI	CTAG	2 cut(s)	279, 1172
BfoI	RGCGCY	1 cut(s)	412
BglII	AGATCT	2 cut(s)	431, 862
BisI	GCNGC	3 cut(s)	48, 593, 621
BlsI	GCNGC	3 cut(s)	49, 594, 622
Bme1390I	CCNGG	2 cut(s)	63, 651
BmeT110I	CYCGRG	1 cut(s)	826
BmiI	GGNNCC	4 cut(s)	60, 410, 891, 1182
BmrFI	CCNGG	2 cut(s)	63, 651
BmrI	ACTGGG	1 cut(s)	414
BmsI	GCATC	2 cut(s)	541, 709
BmtI	GCTAGC	1 cut(s)	1175
BmuI	ACTGGG	1 cut(s)	414
BpmI	CTGGAG	1 cut(s)	515
BpuMI	CCSGG	2 cut(s)	63, 651
BsaAI	YACGTR	1 cut(s)	395
BsaHI	GRCGYC	1 cut(s)	409
BsaI	GGTCTC	1 cut(s)	104
BsaJI	CCNNGG	1 cut(s)	1176
BsaWI	WCCGGW	1 cut(s)	482
BsaXI	ACNNNNNCTCC	2 cut(s)	330, 360
Bsc4I	CCNNNNNNNGG	3 cut(s)	204, 886, 960
Bse1I	ACTGG	1 cut(s)	409
BseDI	CCNNGG	1 cut(s)	1176
BseLI	CCNNNNNNNGG	3 cut(s)	204, 886, 960
BseMII	CTCAG	2 cut(s)	534, 650
BseNI	ACTGG	1 cut(s)	409
BseRI	GAGGAG	1 cut(s)	507
BseXI	GCAGC	3 cut(s)	34, 579, 607
BsgI	GTGCAG	2 cut(s)	133, 1178
Bsh1236I	CGCG	1 cut(s)	1213
BshFI	GGCC	1 cut(s)	269
BshNI	GGYRCC	2 cut(s)	408, 889
BsiHKAI	GWGCWC	1 cut(s)	531
BsiHKCI	CYCGRG	1 cut(s)	826
BsiSI	CCGG	3 cut(s)	62, 483, 650
BslI	CCNNNNNNNGG	3 cut(s)	204, 886, 960
BsmAI	GTCTC	3 cut(s)	104, 410, 730
BsmI	GAATGC	1 cut(s)	761
BsnI	GGCC	1 cut(s)	269
Bso31I	GGTCTC	1 cut(s)	104
BsoBI	CYCGRG	1 cut(s)	826
Bsp1286I	GDGCHC	1 cut(s)	531
Bsp1407I	TGTACA	1 cut(s)	201
Bsp143I	GATC	8 cut(s)	69, 431, 736, 862, 911, 1000, 1051, 1078
Bsp19I	CCATGG	1 cut(s)	1176
BspACI	CCGC	2 cut(s)	4, 1213
BspANI	GGCC	1 cut(s)	269
BspCNI	CTCAG	2 cut(s)	533, 649
BspFNI	CGCG	1 cut(s)	1213
BspHI	TCATGA	1 cut(s)	538
BspLI	GGNNCC	4 cut(s)	60, 410, 891, 1182
BspOI	GCTAGC	1 cut(s)	1175
BspPI	GGATC	4 cut(s)	744, 919, 1059, 1086
BspQI	GCTCTTC	1 cut(s)	519
BspT107I	GGYRCC	2 cut(s)	408, 889
BspTNI	GGTCTC	1 cut(s)	104
BsrGI	TGTACA	1 cut(s)	201
BsrI	ACTGG	1 cut(s)	409
BssECI	CCNNGG	1 cut(s)	1176
BssMI	GATC	8 cut(s)	69, 431, 736, 862, 911, 1000, 1051, 1078
BssNI	GRCGYC	1 cut(s)	409
BssT1I	CCWWGG	1 cut(s)	1176
Bst4CI	ACNGT	3 cut(s)	211, 379, 1166
Bst6I	CTCTTC	3 cut(s)	519, 635, 879
BstACI	GRCGYC	1 cut(s)	409
BstAUI	TGTACA	1 cut(s)	201
BstBAI	YACGTR	1 cut(s)	395
BstC8I	GCNNGC	2 cut(s)	255, 1173
BstDEI	CTNAG	3 cut(s)	435, 520, 636
BstDSI	CCRYGG	1 cut(s)	1176
BstENI	CCTNNNNNAGG	1 cut(s)	884
BstFNI	CGCG	1 cut(s)	1213
BstH2I	RGCGCY	1 cut(s)	412
BstHHI	GCGC	1 cut(s)	411
BstKTI	GATC	8 cut(s)	72, 434, 739, 865, 914, 1003, 1054, 1081
BstMAI	GTCTC	3 cut(s)	104, 410, 730
BstMBI	GATC	8 cut(s)	69, 431, 736, 862, 911, 1000, 1051, 1078
BstMWI	GCNNNNNNNGC	3 cut(s)	156, 275, 950
BstSCI	CCNGG	2 cut(s)	61, 649
BstUI	CGCG	1 cut(s)	1213
BstV1I	GCAGC	3 cut(s)	34, 579, 607
BstX2I	RGATCY	2 cut(s)	431, 862
BstYI	RGATCY	2 cut(s)	431, 862
BsuRI	GGCC	1 cut(s)	269
BtgI	CCRYGG	1 cut(s)	1176
BtsIMutI	CAGTG	1 cut(s)	1066
Cac8I	GCNNGC	2 cut(s)	255, 1173
CciI	TCATGA	1 cut(s)	538
CfoI	GCGC	1 cut(s)	411
CseI	GACGC	2 cut(s)	428, 863
Csp6I	GTAC	4 cut(s)	202, 289, 890, 1162
CviAII	CATG	9 cut(s)	181, 265, 413, 488, 539, 676, 919, 1177, 1203
CviQI	GTAC	4 cut(s)	202, 289, 890, 1162
DdeI	CTNAG	3 cut(s)	435, 520, 636
DinI	GGCGCC	1 cut(s)	410
DpnI	GATC	8 cut(s)	71, 433, 738, 864, 913, 1002, 1053, 1080
DpnII	GATC	8 cut(s)	69, 431, 736, 862, 911, 1000, 1051, 1078
DraI	TTTAAA	1 cut(s)	507
DraIII	CACNNNGTG	1 cut(s)	653
Eam1104I	CTCTTC	3 cut(s)	519, 635, 879
EarI	CTCTTC	3 cut(s)	519, 635, 879
Ecl136II	GAGCTC	1 cut(s)	529
Eco130I	CCWWGG	1 cut(s)	1176
Eco24I	GRGCYC	1 cut(s)	531
Eco31I	GGTCTC	1 cut(s)	104
Eco53kI	GAGCTC	1 cut(s)	529
Eco57I	CTGAAG	1 cut(s)	90
Eco88I	CYCGRG	1 cut(s)	826
EcoICRI	GAGCTC	1 cut(s)	529
EcoNI	CCTNNNNNAGG	1 cut(s)	884
EcoT14I	CCWWGG	1 cut(s)	1176
EcoT38I	GRGCYC	1 cut(s)	531
EgeI	GGCGCC	1 cut(s)	410
EheI	GGCGCC	1 cut(s)	410
ErhI	CCWWGG	1 cut(s)	1176
FaeI	CATG	9 cut(s)	184, 268, 416, 491, 542, 679, 922, 1180, 1206
FatI	CATG	9 cut(s)	180, 264, 412, 487, 538, 675, 918, 1176, 1202
FbaI	TGATCA	1 cut(s)	1000
FblI	GTMKAC	1 cut(s)	78
Fnu4HI	GCNGC	3 cut(s)	48, 593, 621
FriOI	GRGCYC	1 cut(s)	531
Fsp4HI	GCNGC	3 cut(s)	48, 593, 621
FspBI	CTAG	2 cut(s)	279, 1172
GlaI	GCGC	1 cut(s)	410
GluI	GCNGC	3 cut(s)	48, 593, 621
GsuI	CTGGAG	1 cut(s)	515
HaeII	RGCGCY	1 cut(s)	412
HaeIII	GGCC	1 cut(s)	269
HapII	CCGG	3 cut(s)	62, 483, 650
HgaI	GACGC	2 cut(s)	428, 863
HhaI	GCGC	1 cut(s)	411
Hin1I	GRCGYC	1 cut(s)	409
Hin1II	CATG	9 cut(s)	184, 268, 416, 491, 542, 679, 922, 1180, 1206
Hin6I	GCGC	1 cut(s)	409
HinP1I	GCGC	1 cut(s)	409
HincII	GTYRAC	1 cut(s)	843
HindII	GTYRAC	1 cut(s)	843
HinfI	GANTC	7 cut(s)	324, 518, 535, 710, 938, 1037, 1148
HpaII	CCGG	3 cut(s)	62, 483, 650
HphI	GGTGA	2 cut(s)	639, 815
Hpy166II	GTNNAC	3 cut(s)	79, 607, 843
Hpy188I	TCNGA	5 cut(s)	109, 523, 715, 1097, 1130
Hpy188III	TCNNGA	5 cut(s)	10, 515, 532, 539, 1049
Hpy8I	GTNNAC	3 cut(s)	79, 607, 843
Hpy99I	CGWCG	1 cut(s)	879
HpyAV	CCTTC	2 cut(s)	105, 449
HpyCH4III	ACNGT	3 cut(s)	211, 379, 1166
HpyCH4IV	ACGT	2 cut(s)	394, 1112
HpyCH4V	TGCA	6 cut(s)	18, 121, 150, 761, 848, 1159
HpyF10VI	GCNNNNNNNGC	3 cut(s)	156, 275, 950
HpyF3I	CTNAG	3 cut(s)	435, 520, 636
HpySE526I	ACGT	2 cut(s)	394, 1112
Hsp92I	GRCGYC	1 cut(s)	409
Hsp92II	CATG	9 cut(s)	184, 268, 416, 491, 542, 679, 922, 1180, 1206
HspAI	GCGC	1 cut(s)	409
KasI	GGCGCC	1 cut(s)	408
KpnI	GGTACC	1 cut(s)	893
Ksp22I	TGATCA	1 cut(s)	1000
Kzo9I	GATC	8 cut(s)	69, 431, 736, 862, 911, 1000, 1051, 1078
LguI	GCTCTTC	1 cut(s)	519
LmnI	GCTCC	2 cut(s)	534, 589
Lsp1109I	GCAGC	3 cut(s)	34, 579, 607
LweI	GCATC	2 cut(s)	541, 709
MaeI	CTAG	2 cut(s)	279, 1172
MaeII	ACGT	2 cut(s)	394, 1112
MaeIII	GTNAC	4 cut(s)	373, 895, 968, 1061
MalI	GATC	8 cut(s)	71, 433, 738, 864, 913, 1002, 1053, 1080
MboI	GATC	8 cut(s)	69, 431, 736, 862, 911, 1000, 1051, 1078
MboII	GAAGA	7 cut(s)	90, 93, 96, 536, 622, 896, 1151
MfeI	CAATTG	2 cut(s)	28, 130
MflI	RGATCY	2 cut(s)	431, 862
MhlI	GDGCHC	1 cut(s)	531
Mly113I	GGCGCC	1 cut(s)	409
MlyI	GAGTC	4 cut(s)	318, 512, 544, 704
MmeI	TCCRAC	1 cut(s)	1108
MnlI	CCTC	8 cut(s)	163, 231, 343, 356, 485, 765, 880, 1069
MseI	TTAA	7 cut(s)	168, 213, 306, 401, 446, 506, 813
MspI	CCGG	3 cut(s)	62, 483, 650
MspR9I	CCNGG	2 cut(s)	63, 651
MunI	CAATTG	2 cut(s)	28, 130
Mva1269I	GAATGC	1 cut(s)	761
MvnI	CGCG	1 cut(s)	1213
MwoI	GCNNNNNNNGC	3 cut(s)	156, 275, 950
NarI	GGCGCC	1 cut(s)	409
NciI	CCSGG	2 cut(s)	63, 651
NcoI	CCATGG	1 cut(s)	1176
NdeII	GATC	8 cut(s)	69, 431, 736, 862, 911, 1000, 1051, 1078
NheI	GCTAGC	1 cut(s)	1171
NlaIII	CATG	9 cut(s)	184, 268, 416, 491, 542, 679, 922, 1180, 1206
NlaIV	GGNNCC	4 cut(s)	60, 410, 891, 1182
NmuCI	GTSAC	3 cut(s)	373, 895, 1061
PagI	TCATGA	1 cut(s)	538
PciSI	GCTCTTC	1 cut(s)	519
PcsI	WCGNNNNNNNCGW	1 cut(s)	824
PctI	GAATGC	1 cut(s)	761
PfeI	GAWTC	3 cut(s)	938, 1037, 1148
PflFI	GACNNNGTC	1 cut(s)	1124
PkrI	GCNGC	3 cut(s)	49, 594, 622
PleI	GAGTC	4 cut(s)	318, 512, 543, 704
PluTI	GGCGCC	1 cut(s)	412
PpsI	GAGTC	4 cut(s)	318, 512, 543, 704
Ppu21I	YACGTR	1 cut(s)	395
PsiI	TTATAA	1 cut(s)	948
Psp124BI	GAGCTC	1 cut(s)	531
PspN4I	GGNNCC	4 cut(s)	60, 410, 891, 1182
PsuI	RGATCY	2 cut(s)	431, 862
PsyI	GACNNNGTC	1 cut(s)	1124
RsaI	GTAC	4 cut(s)	203, 290, 891, 1163
RsaNI	GTAC	4 cut(s)	202, 289, 890, 1162
SacI	GAGCTC	1 cut(s)	531
SapI	GCTCTTC	1 cut(s)	519
SaqAI	TTAA	7 cut(s)	168, 213, 306, 401, 446, 506, 813
SatI	GCNGC	3 cut(s)	48, 593, 621
Sau3AI	GATC	8 cut(s)	69, 431, 736, 862, 911, 1000, 1051, 1078
SchI	GAGTC	4 cut(s)	318, 512, 544, 704
ScrFI	CCNGG	2 cut(s)	63, 651
SduI	GDGCHC	1 cut(s)	531
SfaNI	GCATC	2 cut(s)	541, 709
SfoI	GGCGCC	1 cut(s)	410
SsiI	CCGC	2 cut(s)	4, 1213
SspDI	GGCGCC	1 cut(s)	408
SspMI	CTAG	2 cut(s)	279, 1172
SstI	GAGCTC	1 cut(s)	531
StyD4I	CCNGG	2 cut(s)	61, 649
StyI	CCWWGG	1 cut(s)	1176
TaaI	ACNGT	3 cut(s)	211, 379, 1166
TaiI	ACGT	2 cut(s)	397, 1115
TaqI	TCGA	3 cut(s)	68, 175, 361
TatI	WGTACW	1 cut(s)	201
TfiI	GAWTC	3 cut(s)	938, 1037, 1148
Tru1I	TTAA	7 cut(s)	168, 213, 306, 401, 446, 506, 813
Tru9I	TTAA	7 cut(s)	168, 213, 306, 401, 446, 506, 813
TscAI	CASTG	1 cut(s)	1066
TseFI	GTSAC	3 cut(s)	373, 895, 1061
TseI	GCWGC	3 cut(s)	47, 592, 620
Tsp45I	GTSAC	3 cut(s)	373, 895, 1061
TspDTI	ATGAA	6 cut(s)	327, 384, 468, 581, 681, 692
TspGWI	ACGGA	1 cut(s)	787
TspRI	CASTG	1 cut(s)	1066
Tth111I	GACNNNGTC	1 cut(s)	1124
XagI	CCTNNNNNAGG	1 cut(s)	884
XapI	RAATTY	3 cut(s)	385, 509, 688
XmiI	GTMKAC	1 cut(s)	78
XspI	CTAG	2 cut(s)	279, 1172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.