Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010184.1

Orthogroup ID

OG0006612

Physical Location & Seq

Genomic Coordinates Forward (+)

59688 .. 61686

Gene Structure 1999 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010184.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

atgcgcttcaagatgtgcaatttgttcaattgggtagtgattatggctgcgtttctggttctgggttcgatcaatgtctacgcatttggttctccttcttcttcttcttcagagaccaccatgcacactaacaattgggatatcaaattaacccaaagcttcttgcttttctcacttctctatcaaattgggcacccaagattcttaacgatgtggttcaagatgtgcaatttgttcaattgggtagtgattatggctgcgtttctggttctgggttcgatcaatgtctacgcatttggttctccttcttcttcttcttcagagaccaccatgcacactaacaattgggctgttctggtctgcacctctcgcttctggtttaattatcgacacatggccaatactttatccctgtacaggacggttaagcgacttggaatacctgatgagaggataatacttatgctggcagatgacatggcctgtaatgctagaaacaagtaccctgcccaagtttttaataatgaaaaccacagactcaacttgtatggagataatgttgaggtagattatcgaggttatgaagtgacggttgaaaactttttacgtgtattaactgggcgccatgagactgctgttccaagatctaagcgtcttttaagtgatgaaggaagccacattcttttgtatatgaccggacatggaggagatgagtttttaaaatttcaagactcagaagagctccagagtcatgatttagctgatgctgtgaaacaaatgaaagaaaagcgtaggttcaaggagctgctgataatggtggacacttgccaagctgccactctcttctcccaggttagtgatctggtcctaccaatgcatgaatcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003923 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006497 GO:0006505 GO:0006506 GO:0006629 GO:0006643 GO:0006644 GO:0006650 GO:0006661 GO:0006664 GO:0006793 GO:0006796 GO:0006807 GO:0008104 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009059 GO:0009247 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016255 GO:0016787 GO:0019538 GO:0019637 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0032991 GO:0033036 GO:0034394 GO:0034613 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0042175 GO:0042765 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046467 GO:0046474 GO:0046486 GO:0046488 GO:0051179 GO:0051641 GO:0070727 GO:0071704 GO:0090407 GO:0098796 GO:0098827 GO:0140096 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

Peptidase_C13

Protein Analysis

295

Amino Acids

33.95

Weight (kDa)

6.79

Isoelectric Point (pI)

44.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006612)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08750 AT1G08750 AT1G08750
fragaria_vesca	FvH4_5g04770 FvH4_5g04770 FvH4_5g04770 FvH4_6g02380 FvH4_6g02380 FvH4_6g02380 FvH4_6g02400
malus_domestica	MD04G1227700.v1.1
prunus_persica	Prupe.6G347300_v2.0.a1 Prupe.6G347300_v2.0.a1
pyrus_communis	pycom04g20120
rosa_chinensis	RchiOBHm_Chr3g0450151
rosa_laevigata	RLG00000025751
rosa_multiflora	Rmu_sc0010184.1_g000006 Rmu_sc0010184.1_g000016
rosa_roxburghii	Rroxscaffold_6G00427910
rosa_rugosa	Rorug02G0625900
rosa_samantha	Rh3AG025200 Rh3BG025800 Rh3BG323000 Rh3CG024700 Rh3DG025800
rosa_wichuraiana	Rw3G002020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	192, 621
AccI	GTMKAC	2 cut(s)	78, 288
AcoI	YGGCCR	1 cut(s)	396
AcsI	RAATTY	1 cut(s)	722
AcuI	CTGAAG	2 cut(s)	93, 303
AcyI	GRCGYC	1 cut(s)	622
AfaI	GTAC	2 cut(s)	416, 503
AfiI	CCNNNNNNNGG	1 cut(s)	417
AflIII	ACRYGT	1 cut(s)	607
AgsI	TTSAA	7 cut(s)	10, 28, 220, 238, 596, 728, 799
AjnI	CCWGG	1 cut(s)	849
AluBI	AGCT	5 cut(s)	159, 742, 761, 805, 833
AluI	AGCT	5 cut(s)	159, 742, 761, 805, 833
Alw21I	GWGCWC	1 cut(s)	744
Alw26I	GTCTC	3 cut(s)	107, 317, 623
AoxI	GGCC	2 cut(s)	396, 480
ApeKI	GCWGC	4 cut(s)	47, 257, 805, 833
ApoI	RAATTY	1 cut(s)	722
AspLEI	GCGC	2 cut(s)	6, 624
AspS9I	GGNCC	1 cut(s)	865
AvaII	GGWCC	1 cut(s)	865
BaeGI	GKGCMC	1 cut(s)	195
BalI	TGGCCA	1 cut(s)	398
BanI	GGYRCC	2 cut(s)	192, 621
BanII	GRGCYC	1 cut(s)	744
Bbv12I	GWGCWC	1 cut(s)	744
BbvI	GCAGC	4 cut(s)	34, 244, 792, 820
BciT130I	CCWGG	1 cut(s)	851
BcoDI	GTCTC	3 cut(s)	107, 317, 623
BfaI	CTAG	2 cut(s)	492, 886
BfoI	RGCGCY	1 cut(s)	625
BglII	AGATCT	1 cut(s)	644
BisI	GCNGC	4 cut(s)	48, 258, 806, 834
BlsI	GCNGC	4 cut(s)	49, 259, 807, 835
Bme1390I	CCNGG	1 cut(s)	851
Bme18I	GGWCC	1 cut(s)	865
BmgT120I	GGNCC	1 cut(s)	865
BmiI	GGNNCC	2 cut(s)	194, 623
BmrFI	CCNGG	1 cut(s)	851
BmrI	ACTGGG	1 cut(s)	627
BmsI	GCATC	1 cut(s)	754
BmuI	ACTGGG	1 cut(s)	627
BpmI	CTGGAG	1 cut(s)	728
BsaAI	YACGTR	1 cut(s)	608
BsaHI	GRCGYC	1 cut(s)	622
BsaI	GGTCTC	2 cut(s)	107, 317
BsaJI	CCNNGG	1 cut(s)	849
BsaWI	WCCGGW	1 cut(s)	695
BsaXI	ACNNNNNCTCC	2 cut(s)	543, 573
Bsc4I	CCNNNNNNNGG	1 cut(s)	417
Bse1I	ACTGG	1 cut(s)	622
BseBI	CCWGG	1 cut(s)	851
BseDI	CCNNGG	1 cut(s)	849
BseLI	CCNNNNNNNGG	1 cut(s)	417
BseMII	CTCAG	1 cut(s)	747
BseNI	ACTGG	1 cut(s)	622
BseRI	GAGGAG	1 cut(s)	720
BseSI	GKGCMC	1 cut(s)	195
BseXI	GCAGC	4 cut(s)	34, 244, 792, 820
BsgI	GTGCAG	1 cut(s)	346
BshFI	GGCC	2 cut(s)	398, 482
BshNI	GGYRCC	2 cut(s)	192, 621
BsiHKAI	GWGCWC	1 cut(s)	744
BsiSI	CCGG	1 cut(s)	696
BslI	CCNNNNNNNGG	1 cut(s)	417
BsmAI	GTCTC	3 cut(s)	107, 317, 623
BsnI	GGCC	2 cut(s)	398, 482
Bso31I	GGTCTC	2 cut(s)	107, 317
Bsp1286I	GDGCHC	2 cut(s)	195, 744
Bsp1407I	TGTACA	1 cut(s)	414
Bsp143I	GATC	4 cut(s)	69, 279, 644, 859
BspANI	GGCC	2 cut(s)	398, 482
BspCNI	CTCAG	1 cut(s)	746
BspHI	TCATGA	1 cut(s)	751
BspLI	GGNNCC	2 cut(s)	194, 623
BspQI	GCTCTTC	1 cut(s)	732
BspT107I	GGYRCC	2 cut(s)	192, 621
BspTNI	GGTCTC	2 cut(s)	107, 317
BsrGI	TGTACA	1 cut(s)	414
BsrI	ACTGG	1 cut(s)	622
BssECI	CCNNGG	1 cut(s)	849
BssMI	GATC	4 cut(s)	69, 279, 644, 859
BssNI	GRCGYC	1 cut(s)	622
Bst2UI	CCWGG	1 cut(s)	851
Bst4CI	ACNGT	2 cut(s)	424, 592
Bst6I	CTCTTC	2 cut(s)	732, 848
BstACI	GRCGYC	1 cut(s)	622
BstAUI	TGTACA	1 cut(s)	414
BstBAI	YACGTR	1 cut(s)	608
BstC8I	GCNNGC	1 cut(s)	468
BstDEI	CTNAG	2 cut(s)	648, 733
BstH2I	RGCGCY	1 cut(s)	625
BstHHI	GCGC	2 cut(s)	6, 624
BstKTI	GATC	4 cut(s)	72, 282, 647, 862
BstMAI	GTCTC	3 cut(s)	107, 317, 623
BstMBI	GATC	4 cut(s)	69, 279, 644, 859
BstMWI	GCNNNNNNNGC	2 cut(s)	369, 488
BstNI	CCWGG	1 cut(s)	851
BstSCI	CCNGG	1 cut(s)	849
BstSLI	GKGCMC	1 cut(s)	195
BstV1I	GCAGC	4 cut(s)	34, 244, 792, 820
BstX2I	RGATCY	1 cut(s)	644
BstYI	RGATCY	1 cut(s)	644
BsuRI	GGCC	2 cut(s)	398, 482
Cac8I	GCNNGC	1 cut(s)	468
CciI	TCATGA	1 cut(s)	751
CfoI	GCGC	2 cut(s)	6, 624
Cfr13I	GGNCC	1 cut(s)	865
CseI	GACGC	1 cut(s)	641
Csp6I	GTAC	2 cut(s)	415, 502
CviAII	CATG	8 cut(s)	121, 331, 394, 478, 626, 701, 752, 878
CviQI	GTAC	2 cut(s)	415, 502
DdeI	CTNAG	2 cut(s)	648, 733
DinI	GGCGCC	1 cut(s)	623
DpnI	GATC	4 cut(s)	71, 281, 646, 861
DpnII	GATC	4 cut(s)	69, 279, 644, 859
DraI	TTTAAA	1 cut(s)	720
EaeI	YGGCCR	1 cut(s)	396
Eam1104I	CTCTTC	2 cut(s)	732, 848
EarI	CTCTTC	2 cut(s)	732, 848
Ecl136II	GAGCTC	1 cut(s)	742
Eco24I	GRGCYC	1 cut(s)	744
Eco31I	GGTCTC	2 cut(s)	107, 317
Eco32I	GATATC	1 cut(s)	142
Eco47I	GGWCC	1 cut(s)	865
Eco53kI	GAGCTC	1 cut(s)	742
Eco57I	CTGAAG	2 cut(s)	93, 303
EcoICRI	GAGCTC	1 cut(s)	742
EcoRII	CCWGG	1 cut(s)	849
EcoRV	GATATC	1 cut(s)	142
EcoT22I	ATGCAT	1 cut(s)	879
EcoT38I	GRGCYC	1 cut(s)	744
EgeI	GGCGCC	1 cut(s)	623
EheI	GGCGCC	1 cut(s)	623
FaeI	CATG	8 cut(s)	124, 334, 397, 481, 629, 704, 755, 881
FatI	CATG	8 cut(s)	120, 330, 393, 477, 625, 700, 751, 877
FblI	GTMKAC	2 cut(s)	78, 288
Fnu4HI	GCNGC	4 cut(s)	48, 258, 806, 834
FriOI	GRGCYC	1 cut(s)	744
Fsp4HI	GCNGC	4 cut(s)	48, 258, 806, 834
FspBI	CTAG	2 cut(s)	492, 886
GlaI	GCGC	2 cut(s)	5, 623
GluI	GCNGC	4 cut(s)	48, 258, 806, 834
GsuI	CTGGAG	1 cut(s)	728
HaeII	RGCGCY	1 cut(s)	625
HaeIII	GGCC	2 cut(s)	398, 482
HapII	CCGG	1 cut(s)	696
HgaI	GACGC	1 cut(s)	641
HhaI	GCGC	2 cut(s)	6, 624
Hin1I	GRCGYC	1 cut(s)	622
Hin1II	CATG	8 cut(s)	124, 334, 397, 481, 629, 704, 755, 881
Hin6I	GCGC	2 cut(s)	4, 622
HinP1I	GCGC	2 cut(s)	4, 622
HindIII	AAGCTT	1 cut(s)	157
HinfI	GANTC	5 cut(s)	201, 537, 731, 748, 881
HpaII	CCGG	1 cut(s)	696
Hpy166II	GTNNAC	3 cut(s)	79, 289, 820
Hpy188I	TCNGA	3 cut(s)	112, 322, 736
Hpy188III	TCNNGA	5 cut(s)	10, 220, 728, 745, 752
Hpy8I	GTNNAC	3 cut(s)	79, 289, 820
HpyAV	CCTTC	3 cut(s)	105, 315, 662
HpyCH4III	ACNGT	2 cut(s)	424, 592
HpyCH4IV	ACGT	1 cut(s)	607
HpyCH4V	TGCA	6 cut(s)	18, 124, 228, 334, 363, 877
HpyF10VI	GCNNNNNNNGC	2 cut(s)	369, 488
HpyF3I	CTNAG	2 cut(s)	648, 733
HpySE526I	ACGT	1 cut(s)	607
Hsp92I	GRCGYC	1 cut(s)	622
Hsp92II	CATG	8 cut(s)	124, 334, 397, 481, 629, 704, 755, 881
HspAI	GCGC	2 cut(s)	4, 622
KasI	GGCGCC	1 cut(s)	621
Kzo9I	GATC	4 cut(s)	69, 279, 644, 859
LguI	GCTCTTC	1 cut(s)	732
LmnI	GCTCC	2 cut(s)	747, 802
Lsp1109I	GCAGC	4 cut(s)	34, 244, 792, 820
LweI	GCATC	1 cut(s)	754
MaeI	CTAG	2 cut(s)	492, 886
MaeII	ACGT	1 cut(s)	607
MaeIII	GTNAC	1 cut(s)	586
MalI	GATC	4 cut(s)	71, 281, 646, 861
MboI	GATC	4 cut(s)	69, 279, 644, 859
MfeI	CAATTG	4 cut(s)	28, 133, 238, 343
MflI	RGATCY	1 cut(s)	644
MhlI	GDGCHC	2 cut(s)	195, 744
MlsI	TGGCCA	1 cut(s)	398
MluNI	TGGCCA	1 cut(s)	398
Mly113I	GGCGCC	1 cut(s)	622
MlyI	GAGTC	3 cut(s)	531, 725, 757
MnlI	CCTC	5 cut(s)	376, 444, 556, 569, 698
Mox20I	TGGCCA	1 cut(s)	398
Mph1103I	ATGCAT	1 cut(s)	879
MscI	TGGCCA	1 cut(s)	398
MseI	TTAA	8 cut(s)	149, 206, 381, 426, 519, 614, 659, 719
Msp20I	TGGCCA	1 cut(s)	398
MspI	CCGG	1 cut(s)	696
MspR9I	CCNGG	1 cut(s)	851
MunI	CAATTG	4 cut(s)	28, 133, 238, 343
MvaI	CCWGG	1 cut(s)	851
MwoI	GCNNNNNNNGC	2 cut(s)	369, 488
NarI	GGCGCC	1 cut(s)	622
NdeII	GATC	4 cut(s)	69, 279, 644, 859
NlaIII	CATG	8 cut(s)	124, 334, 397, 481, 629, 704, 755, 881
NlaIV	GGNNCC	2 cut(s)	194, 623
NmuCI	GTSAC	1 cut(s)	586
NsiI	ATGCAT	1 cut(s)	879
PagI	TCATGA	1 cut(s)	751
PciSI	GCTCTTC	1 cut(s)	732
PfeI	GAWTC	2 cut(s)	201, 881
PkrI	GCNGC	4 cut(s)	49, 259, 807, 835
PleI	GAGTC	3 cut(s)	531, 725, 756
PluTI	GGCGCC	1 cut(s)	625
PpsI	GAGTC	3 cut(s)	531, 725, 756
Ppu21I	YACGTR	1 cut(s)	608
Psp124BI	GAGCTC	1 cut(s)	744
Psp6I	CCWGG	1 cut(s)	849
PspGI	CCWGG	1 cut(s)	849
PspN4I	GGNNCC	2 cut(s)	194, 623
PspPI	GGNCC	1 cut(s)	865
PsuI	RGATCY	1 cut(s)	644
RsaI	GTAC	2 cut(s)	416, 503
RsaNI	GTAC	2 cut(s)	415, 502
SacI	GAGCTC	1 cut(s)	744
SapI	GCTCTTC	1 cut(s)	732
SaqAI	TTAA	8 cut(s)	149, 206, 381, 426, 519, 614, 659, 719
SatI	GCNGC	4 cut(s)	48, 258, 806, 834
Sau3AI	GATC	4 cut(s)	69, 279, 644, 859
Sau96I	GGNCC	1 cut(s)	865
SchI	GAGTC	3 cut(s)	531, 725, 757
ScrFI	CCNGG	1 cut(s)	851
SduI	GDGCHC	2 cut(s)	195, 744
SfaNI	GCATC	1 cut(s)	754
SfoI	GGCGCC	1 cut(s)	623
SinI	GGWCC	1 cut(s)	865
SspDI	GGCGCC	1 cut(s)	621
SspMI	CTAG	2 cut(s)	492, 886
SstI	GAGCTC	1 cut(s)	744
StyD4I	CCNGG	1 cut(s)	849
TaaI	ACNGT	2 cut(s)	424, 592
TaiI	ACGT	1 cut(s)	610
TaqI	TCGA	4 cut(s)	68, 278, 388, 574
TatI	WGTACW	1 cut(s)	414
TfiI	GAWTC	2 cut(s)	201, 881
Tru1I	TTAA	8 cut(s)	149, 206, 381, 426, 519, 614, 659, 719
Tru9I	TTAA	8 cut(s)	149, 206, 381, 426, 519, 614, 659, 719
TseFI	GTSAC	1 cut(s)	586
TseI	GCWGC	4 cut(s)	47, 257, 805, 833
Tsp45I	GTSAC	1 cut(s)	586
TspDTI	ATGAA	4 cut(s)	540, 597, 681, 794
VpaK11BI	GGWCC	1 cut(s)	865
XapI	RAATTY	1 cut(s)	722
XmiI	GTMKAC	2 cut(s)	78, 288
XspI	CTAG	2 cut(s)	492, 886
Zsp2I	ATGCAT	1 cut(s)	879

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.