Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0006612

Physical Location & Seq

Genomic Coordinates Forward (+)

29725931 .. 29729851

Gene Structure 3921 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G347300.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGTGCAATTTATTCAAATCCATAGTGGTGGCTGCGGCGTTATTGCTTCTGGGTCCGTGCACTGTCACCAAATGCATGGCGTTTGGTTCTCCTCCTTCTTCTGAGACCACTATGCACACTAACAATTGGGCTGTTCTGGTCTGCACCTCTCGATTCTGGTTTAATTATCGACACATGGCCAATACTTTATCCCTGTATCGGACTGTTAAGCGACTTGGAATACCTGATGAGAGAATAATACTTATGCTGGCAGATGACATGGCCTGTAATGCTAGAAACAAGTATCCTGCCCAAGTTTTTAACAATGAAAACCACAGACTCAACTTGTATGGAGATAATGTTGAGGTGGATTATCGAGGGTATGAAGTGACAGTTGAAAATTTTTTACGTGTATTGACTGGGCGTCATGAGAATGCTGTTCCAAGATCTAAGCGTCTTTTGAGTGATGAAGGAAGCCACATTCTTTTGTATATGACAGGACATGGAGGAGATGAATTTTTAAAATTTCAAGATTCGGAAGAGCTCCAGAGTCATGATTTAGCTGATGCAGTTAAACAAATGAAAGAAAAGCATAGATTCAAGGAGCTGCTGATAATGGTAGACACTTGCCAAGCTGCCACTCTCTTCTCTCAGCTTCAATCACCCGGAGTTTTGGCTATTGGAAGTAGCATGAAAGGGGAGAACTCATACTCACATCACTTGGACTCTGATGTTGGTGTTTCTGTTGTAGATCGTTTTACATTTTACACCCTTGCGTTCTTTGAGAGGCTAAATATGTATGATAATGCCTCATTGAGCAGTCTTTTCAATTCCTATAACCCAACCTTGTTGATGTCAACCGCATATTACAGAACAGATCTATACCAGCAACACCTGGAAGAGGTGCCCGTGACGAACTTCTTTGGTTCAGTCATGGAAACTATACATACTGATTCAACTTATAAAGCCCCTTCAATAAAAAGTTTCAGCAGAGCTGAAATCAAGATGCCCCTTGATCAACCAGCCAATGACAATGAAAGAAGAATTTTGGCAGATTCAAATGGTCAAGATCAAATCAGTAACCCCAAAAAAGAGGAACAACAGGGTGCTTTCAGACATTTGTGGAACACTATTAATGACAAGGTGGAAAAAATTGAAGATGTCGATTCCTTTGTGCTGTACGGCCTGTTAGTAATGCTTCCAGTGTTGCTACTTCCCACGCTGTTATCATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003923 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006497 GO:0006505 GO:0006506 GO:0006629 GO:0006643 GO:0006644 GO:0006650 GO:0006661 GO:0006664 GO:0006793 GO:0006796 GO:0006807 GO:0008104 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009059 GO:0009247 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016255 GO:0016787 GO:0019538 GO:0019637 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0032991 GO:0033036 GO:0034394 GO:0034613 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0042175 GO:0042765 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046467 GO:0046474 GO:0046486 GO:0046488 GO:0051179 GO:0051641 GO:0070727 GO:0071704 GO:0090407 GO:0098796 GO:0098827 GO:0140096 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

Peptidase_C13

Protein Analysis

405

Amino Acids

46.02

Weight (kDa)

5.73

Isoelectric Point (pI)

44.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006612)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08750 AT1G08750 AT1G08750
fragaria_vesca	FvH4_5g04770 FvH4_5g04770 FvH4_5g04770 FvH4_6g02380 FvH4_6g02380 FvH4_6g02380 FvH4_6g02400
malus_domestica	MD04G1227700.v1.1
prunus_persica	Prupe.6G347300_v2.0.a1 Prupe.6G347300_v2.0.a1
pyrus_communis	pycom04g20120
rosa_chinensis	RchiOBHm_Chr3g0450151
rosa_laevigata	RLG00000025751
rosa_multiflora	Rmu_sc0010184.1_g000006 Rmu_sc0010184.1_g000016
rosa_roxburghii	Rroxscaffold_6G00427910
rosa_rugosa	Rorug02G0625900
rosa_samantha	Rh3AG025200 Rh3BG025800 Rh3BG323000 Rh3CG024700 Rh3DG025800
rosa_wichuraiana	Rw3G002020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	942
AccB1I	GGYRCC	1 cut(s)	883
AccI	GTMKAC	1 cut(s)	600
AciI	CCGC	2 cut(s)	35, 840
AcoI	YGGCCR	1 cut(s)	177
AcsI	RAATTY	4 cut(s)	379, 494, 503, 1023
AcyI	GRCGYC	1 cut(s)	403
AfaI	GTAC	1 cut(s)	1160
AfiI	CCNNNNNNNGG	2 cut(s)	198, 880
AflIII	ACRYGT	1 cut(s)	388
AhdI	GACNNNNNGTC	1 cut(s)	402
AjnI	CCWGG	1 cut(s)	873
AluBI	AGCT	6 cut(s)	523, 542, 586, 614, 634, 974
AluI	AGCT	6 cut(s)	523, 542, 586, 614, 634, 974
Alw21I	GWGCWC	2 cut(s)	62, 525
Alw26I	GTCTC	1 cut(s)	98
Alw44I	GTGCAC	1 cut(s)	58
AoxI	GGCC	3 cut(s)	177, 261, 1162
ApaLI	GTGCAC	1 cut(s)	58
ApeKI	GCWGC	3 cut(s)	32, 586, 614
ApoI	RAATTY	4 cut(s)	379, 494, 503, 1023
AseI	ATTAAT	1 cut(s)	1113
AspS9I	GGNCC	1 cut(s)	53
AsuC2I	CCSGG	1 cut(s)	645
AsuHPI	GGTGA	2 cut(s)	58, 633
AvaII	GGWCC	1 cut(s)	53
BaeGI	GKGCMC	2 cut(s)	62, 888
BalI	TGGCCA	1 cut(s)	179
BanI	GGYRCC	1 cut(s)	883
BanII	GRGCYC	1 cut(s)	525
Bbv12I	GWGCWC	2 cut(s)	62, 525
BbvI	GCAGC	3 cut(s)	19, 573, 601
BceAI	ACGGC	1 cut(s)	1177
BciT130I	CCWGG	1 cut(s)	875
BciVI	GTATCC	1 cut(s)	294
BclI	TGATCA	1 cut(s)	994
BcnI	CCSGG	1 cut(s)	645
BcoDI	GTCTC	1 cut(s)	98
BfaI	CTAG	1 cut(s)	273
BfuI	GTATCC	1 cut(s)	294
BglII	AGATCT	2 cut(s)	425, 856
BisI	GCNGC	4 cut(s)	33, 36, 587, 615
BlsI	GCNGC	4 cut(s)	34, 37, 588, 616
Bme1390I	CCNGG	2 cut(s)	645, 875
Bme18I	GGWCC	1 cut(s)	53
BmeRI	GACNNNNNGTC	1 cut(s)	402
BmgT120I	GGNCC	1 cut(s)	53
BmiI	GGNNCC	2 cut(s)	54, 885
BmrFI	CCNGG	2 cut(s)	645, 875
BmrI	ACTGGG	1 cut(s)	408
BmsI	GCATC	2 cut(s)	535, 975
BmuI	ACTGGG	1 cut(s)	408
BpmI	CTGGAG	1 cut(s)	509
BpuMI	CCSGG	1 cut(s)	645
BsaAI	YACGTR	1 cut(s)	389
BsaHI	GRCGYC	1 cut(s)	403
BsaI	GGTCTC	1 cut(s)	98
BsaXI	ACNNNNNCTCC	2 cut(s)	324, 354
Bsc4I	CCNNNNNNNGG	2 cut(s)	198, 880
Bse1I	ACTGG	2 cut(s)	403, 1181
BseBI	CCWGG	1 cut(s)	875
BseLI	CCNNNNNNNGG	2 cut(s)	198, 880
BseMII	CTCAG	2 cut(s)	93, 644
BseNI	ACTGG	2 cut(s)	403, 1181
BseRI	GAGGAG	2 cut(s)	81, 501
BseSI	GKGCMC	2 cut(s)	62, 888
BseXI	GCAGC	3 cut(s)	19, 573, 601
BsgI	GTGCAG	1 cut(s)	127
BshFI	GGCC	3 cut(s)	179, 263, 1164
BshNI	GGYRCC	1 cut(s)	883
BsiHKAI	GWGCWC	2 cut(s)	62, 525
BsiSI	CCGG	1 cut(s)	645
BslI	CCNNNNNNNGG	2 cut(s)	198, 880
BsmAI	GTCTC	1 cut(s)	98
BsmI	GAATGC	1 cut(s)	418
BsnI	GGCC	3 cut(s)	179, 263, 1164
Bso31I	GGTCTC	1 cut(s)	98
Bsp1286I	GDGCHC	3 cut(s)	62, 525, 888
Bsp143I	GATC	5 cut(s)	425, 730, 856, 994, 1048
BspACI	CCGC	2 cut(s)	35, 840
BspANI	GGCC	3 cut(s)	179, 263, 1164
BspCNI	CTCAG	2 cut(s)	94, 643
BspHI	TCATGA	2 cut(s)	406, 532
BspLI	GGNNCC	2 cut(s)	54, 885
BspQI	GCTCTTC	1 cut(s)	513
BspT107I	GGYRCC	1 cut(s)	883
BspTNI	GGTCTC	1 cut(s)	98
BsrI	ACTGG	2 cut(s)	403, 1181
BssMI	GATC	5 cut(s)	425, 730, 856, 994, 1048
BssNI	GRCGYC	1 cut(s)	403
Bst2UI	CCWGG	1 cut(s)	875
Bst4CI	ACNGT	3 cut(s)	64, 205, 373
Bst6I	CTCTTC	3 cut(s)	513, 629, 873
BstACI	GRCGYC	1 cut(s)	403
BstBAI	YACGTR	1 cut(s)	389
BstC8I	GCNNGC	1 cut(s)	249
BstDEI	CTNAG	3 cut(s)	102, 429, 630
BstENI	CCTNNNNNAGG	1 cut(s)	878
BstKTI	GATC	5 cut(s)	428, 733, 859, 997, 1051
BstMAI	GTCTC	1 cut(s)	98
BstMBI	GATC	5 cut(s)	425, 730, 856, 994, 1048
BstMWI	GCNNNNNNNGC	1 cut(s)	269
BstNI	CCWGG	1 cut(s)	875
BstSCI	CCNGG	2 cut(s)	643, 873
BstSLI	GKGCMC	2 cut(s)	62, 888
BstV1I	GCAGC	3 cut(s)	19, 573, 601
BstX2I	RGATCY	2 cut(s)	425, 856
BstXI	CCANNNNNNTGG	2 cut(s)	28, 76
BstYI	RGATCY	2 cut(s)	425, 856
BsuI	GTATCC	1 cut(s)	294
BsuRI	GGCC	3 cut(s)	179, 263, 1164
BtsIMutI	CAGTG	2 cut(s)	60, 1188
Cac8I	GCNNGC	1 cut(s)	249
CciI	TCATGA	2 cut(s)	406, 532
Cfr13I	GGNCC	1 cut(s)	53
CseI	GACGC	2 cut(s)	392, 422
Csp6I	GTAC	1 cut(s)	1159
CviAII	CATG	9 cut(s)	76, 175, 259, 407, 482, 533, 670, 913, 1209
CviQI	GTAC	1 cut(s)	1159
DdeI	CTNAG	3 cut(s)	102, 429, 630
DpnI	GATC	5 cut(s)	427, 732, 858, 996, 1050
DpnII	GATC	5 cut(s)	425, 730, 856, 994, 1048
DraI	TTTAAA	1 cut(s)	501
DriI	GACNNNNNGTC	1 cut(s)	402
EaeI	YGGCCR	1 cut(s)	177
Eam1104I	CTCTTC	3 cut(s)	513, 629, 873
Eam1105I	GACNNNNNGTC	1 cut(s)	402
EarI	CTCTTC	3 cut(s)	513, 629, 873
Ecl136II	GAGCTC	1 cut(s)	523
Eco24I	GRGCYC	1 cut(s)	525
Eco31I	GGTCTC	1 cut(s)	98
Eco47I	GGWCC	1 cut(s)	53
Eco53kI	GAGCTC	1 cut(s)	523
EcoICRI	GAGCTC	1 cut(s)	523
EcoNI	CCTNNNNNAGG	1 cut(s)	878
EcoRII	CCWGG	1 cut(s)	873
EcoT22I	ATGCAT	1 cut(s)	77
EcoT38I	GRGCYC	1 cut(s)	525
FaeI	CATG	9 cut(s)	79, 178, 262, 410, 485, 536, 673, 916, 1212
FatI	CATG	9 cut(s)	75, 174, 258, 406, 481, 532, 669, 912, 1208
FbaI	TGATCA	1 cut(s)	994
FblI	GTMKAC	1 cut(s)	600
Fnu4HI	GCNGC	4 cut(s)	33, 36, 587, 615
FriOI	GRGCYC	1 cut(s)	525
Fsp4HI	GCNGC	4 cut(s)	33, 36, 587, 615
FspBI	CTAG	1 cut(s)	273
GluI	GCNGC	4 cut(s)	33, 36, 587, 615
GsuI	CTGGAG	1 cut(s)	509
HaeIII	GGCC	3 cut(s)	179, 263, 1164
HapII	CCGG	1 cut(s)	645
HgaI	GACGC	2 cut(s)	392, 422
Hin1I	GRCGYC	1 cut(s)	403
Hin1II	CATG	9 cut(s)	79, 178, 262, 410, 485, 536, 673, 916, 1212
HincII	GTYRAC	1 cut(s)	837
HindII	GTYRAC	1 cut(s)	837
HinfI	GANTC	9 cut(s)	153, 318, 512, 529, 576, 704, 932, 1034, 1145
HpaII	CCGG	1 cut(s)	645
HphI	GGTGA	2 cut(s)	58, 633
Hpy166II	GTNNAC	3 cut(s)	60, 601, 837
Hpy188I	TCNGA	5 cut(s)	103, 201, 517, 709, 1094
Hpy188III	TCNNGA	7 cut(s)	150, 407, 509, 526, 533, 982, 1046
Hpy8I	GTNNAC	3 cut(s)	60, 601, 837
HpyAV	CCTTC	3 cut(s)	105, 443, 960
HpyCH4III	ACNGT	3 cut(s)	64, 205, 373
HpyCH4IV	ACGT	1 cut(s)	388
HpyCH4V	TGCA	6 cut(s)	6, 60, 75, 115, 144, 548
HpyF10VI	GCNNNNNNNGC	1 cut(s)	269
HpyF3I	CTNAG	3 cut(s)	102, 429, 630
HpySE526I	ACGT	1 cut(s)	388
Hsp92I	GRCGYC	1 cut(s)	403
Hsp92II	CATG	9 cut(s)	79, 178, 262, 410, 485, 536, 673, 916, 1212
Ksp22I	TGATCA	1 cut(s)	994
Kzo9I	GATC	5 cut(s)	425, 730, 856, 994, 1048
LguI	GCTCTTC	1 cut(s)	513
LmnI	GCTCC	2 cut(s)	528, 583
Lsp1109I	GCAGC	3 cut(s)	19, 573, 601
LweI	GCATC	2 cut(s)	535, 975
MaeI	CTAG	1 cut(s)	273
MaeII	ACGT	1 cut(s)	388
MaeIII	GTNAC	4 cut(s)	64, 367, 889, 1058
MalI	GATC	5 cut(s)	427, 732, 858, 996, 1050
MboI	GATC	5 cut(s)	425, 730, 856, 994, 1048
MboII	GAAGA	6 cut(s)	90, 530, 616, 890, 1032, 1148
MfeI	CAATTG	1 cut(s)	124
MflI	RGATCY	2 cut(s)	425, 856
MhlI	GDGCHC	3 cut(s)	62, 525, 888
MlsI	TGGCCA	1 cut(s)	179
MluCI	AATT	9 cut(s)	7, 124, 163, 379, 494, 503, 808, 1023, 1131
MluNI	TGGCCA	1 cut(s)	179
MlyI	GAGTC	3 cut(s)	312, 538, 698
MnlI	CCTC	9 cut(s)	102, 157, 337, 350, 479, 759, 799, 874, 1066
Mox20I	TGGCCA	1 cut(s)	179
Mph1103I	ATGCAT	1 cut(s)	77
MscI	TGGCCA	1 cut(s)	179
MseI	TTAA	6 cut(s)	162, 207, 300, 500, 552, 1113
MslI	CAYNNNNRTG	2 cut(s)	26, 411
Msp20I	TGGCCA	1 cut(s)	179
MspI	CCGG	1 cut(s)	645
MspR9I	CCNGG	2 cut(s)	645, 875
MunI	CAATTG	1 cut(s)	124
Mva1269I	GAATGC	1 cut(s)	418
MvaI	CCWGG	1 cut(s)	875
MwoI	GCNNNNNNNGC	1 cut(s)	269
NciI	CCSGG	1 cut(s)	645
NdeII	GATC	5 cut(s)	425, 730, 856, 994, 1048
NlaIII	CATG	9 cut(s)	79, 178, 262, 410, 485, 536, 673, 916, 1212
NlaIV	GGNNCC	2 cut(s)	54, 885
NmuCI	GTSAC	3 cut(s)	64, 367, 889
NsiI	ATGCAT	1 cut(s)	77
PagI	TCATGA	2 cut(s)	406, 532
PciSI	GCTCTTC	1 cut(s)	513
PctI	GAATGC	1 cut(s)	418
PfeI	GAWTC	6 cut(s)	153, 512, 576, 932, 1034, 1145
PkrI	GCNGC	4 cut(s)	34, 37, 588, 616
PleI	GAGTC	3 cut(s)	312, 537, 698
PpsI	GAGTC	3 cut(s)	312, 537, 698
Ppu21I	YACGTR	1 cut(s)	389
PshBI	ATTAAT	1 cut(s)	1113
PsiI	TTATAA	1 cut(s)	942
Psp124BI	GAGCTC	1 cut(s)	525
Psp6I	CCWGG	1 cut(s)	873
PspGI	CCWGG	1 cut(s)	873
PspN4I	GGNNCC	2 cut(s)	54, 885
PspPI	GGNCC	1 cut(s)	53
PsuI	RGATCY	2 cut(s)	425, 856
RsaI	GTAC	1 cut(s)	1160
RsaNI	GTAC	1 cut(s)	1159
RseI	CAYNNNNRTG	2 cut(s)	26, 411
SacI	GAGCTC	1 cut(s)	525
SapI	GCTCTTC	1 cut(s)	513
SaqAI	TTAA	6 cut(s)	162, 207, 300, 500, 552, 1113
SatI	GCNGC	4 cut(s)	33, 36, 587, 615
Sau3AI	GATC	5 cut(s)	425, 730, 856, 994, 1048
Sau96I	GGNCC	1 cut(s)	53
SchI	GAGTC	3 cut(s)	312, 538, 698
ScrFI	CCNGG	2 cut(s)	645, 875
SduI	GDGCHC	3 cut(s)	62, 525, 888
SfaNI	GCATC	2 cut(s)	535, 975
SinI	GGWCC	1 cut(s)	53
SmiMI	CAYNNNNRTG	2 cut(s)	26, 411
Sse9I	AATT	9 cut(s)	7, 124, 163, 379, 494, 503, 808, 1023, 1131
SsiI	CCGC	2 cut(s)	35, 840
SspMI	CTAG	1 cut(s)	273
SstI	GAGCTC	1 cut(s)	525
StyD4I	CCNGG	2 cut(s)	643, 873
TaaI	ACNGT	3 cut(s)	64, 205, 373
TaiI	ACGT	1 cut(s)	391
TaqI	TCGA	4 cut(s)	151, 169, 355, 1143
TasI	AATT	9 cut(s)	7, 124, 163, 379, 494, 503, 808, 1023, 1131
TauI	GCSGC	1 cut(s)	38
TfiI	GAWTC	6 cut(s)	153, 512, 576, 932, 1034, 1145
Tru1I	TTAA	6 cut(s)	162, 207, 300, 500, 552, 1113
Tru9I	TTAA	6 cut(s)	162, 207, 300, 500, 552, 1113
TscAI	CASTG	2 cut(s)	67, 1188
TseFI	GTSAC	3 cut(s)	64, 367, 889
TseI	GCWGC	3 cut(s)	32, 586, 614
Tsp45I	GTSAC	3 cut(s)	64, 367, 889
TspDTI	ATGAA	7 cut(s)	321, 378, 462, 507, 575, 686, 1029
TspGWI	ACGGA	1 cut(s)	45
TspRI	CASTG	2 cut(s)	67, 1188
VneI	GTGCAC	1 cut(s)	58
VpaK11BI	GGWCC	1 cut(s)	53
VspI	ATTAAT	1 cut(s)	1113
XagI	CCTNNNNNAGG	1 cut(s)	878
XapI	RAATTY	4 cut(s)	379, 494, 503, 1023
XmiI	GTMKAC	1 cut(s)	600
XspI	CTAG	1 cut(s)	273
Zsp2I	ATGCAT	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.