Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0006612

Physical Location & Seq

Genomic Coordinates Reverse (-)

2837515 .. 2842134

Gene Structure 4620 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g04770.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGTCCTATTTGTTCAATTGCTGTTCTGGGTTTTTGGTTATGGCTGCGTTTTTGGTTCTGGGTTCGATCAATGTCTACGCATTTGGGTCTCCTTCATCTTCAGAGACCACTATGCACACTAACAATTGGGCTGTTCTTGTCTGCACCTCTCGTTTCTGGTTTAATTATCGACACATGGCCAATACTCTATCCCTGTACAGGACGGTTAAGCGACTTGGAATACCTGATGAGAGGATAATTCTTATGCTGGCAGATGACATGGCCTGTAATGCTAGAAATAAGTACCCTGCCCAAGTTTTCAATAATGAAAACCACAAACTCAACTTGTATGGAGATAATGTTGAGGTAGATTATCGAGGTTATGAAGTGACTGTTGAAAATTTTCTACGTGTATTAACTGGGCGCCATGAAACTGCTGTTCCAAGATCTAAGCGTCTTTTAAGTGATGAAGGAAGCCACATTCTCTTGTATATGACTGGGCATGGAGGAGATGAGTTTTTAAAATTTCAAGACTCAGAAGAGCTCCAGAGTCATGATTTAGCTGATGCTGTGAAACAAATGAAAGAAAAGCGTAGGTTCAAGGAGCTACTGATAATGGTGGACACTTGCCAGGCTGCCACTCTCTTCTCTCAGCTTCAATCACCAGGTGTTTTGGCTCTTGGAAGTAGCATGAAAGGAGAAAATTCGTACTCGCATCACTTGGACTCAGATGTTGGTGTCTCTGTTGTGGATCGTTTTACATTTTACACACTTGCATTCTTTGAGAAGCTAAATATGTATGCCAATGCATCCGTGAGCAGTCTTTTTAATTCGTATCACCCAAGCTTCTTGATGTCAACTGCATATTATCGAACAGATCTATACCAGCGTCGCCTTGAAGAGGTACCTGTGACGAACTTCTTTGGATCAGTCATGGAAACCATACACACTGATTCAGCCTATAAAGCCCTTTCAAGGAAAAGTTGCCGCAGAGCTGAAATCAATACACCCTCTGATCAATCTGCTGATGGTGATGAAAGAACTTTGGCAGATTCAAATGGTCAGGATCAATTCAGTGATTTGAAAAAAGAGGATCAACAAAGTGCTTTCAGACATTTGTGGAACACTTTCAATGACAAAGTCAGAAAAATTGAAGATGCGGATTCATTTGTGCAGTATGGTTTGCTAGCCATGCTTCCACTATTGCTACTTCCCACATGGTTATCGCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003923 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006497 GO:0006505 GO:0006506 GO:0006629 GO:0006643 GO:0006644 GO:0006650 GO:0006661 GO:0006664 GO:0006793 GO:0006796 GO:0006807 GO:0008104 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009059 GO:0009247 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016255 GO:0016787 GO:0019538 GO:0019637 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0032991 GO:0033036 GO:0034394 GO:0034613 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0042175 GO:0042765 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046467 GO:0046474 GO:0046486 GO:0046488 GO:0051179 GO:0051641 GO:0070727 GO:0071704 GO:0090407 GO:0098796 GO:0098827 GO:0140096 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

Peptidase_C13

Protein Analysis

404

Amino Acids

46.01

Weight (kDa)

5.96

Isoelectric Point (pI)

48.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C13	PF01650	42 - 235	5.1e-45	Peptidase C13 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006612)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08750 AT1G08750 AT1G08750
fragaria_vesca	FvH4_5g04770 FvH4_5g04770 FvH4_5g04770 FvH4_6g02380 FvH4_6g02380 FvH4_6g02380 FvH4_6g02400
malus_domestica	MD04G1227700.v1.1
prunus_persica	Prupe.6G347300_v2.0.a1 Prupe.6G347300_v2.0.a1
pyrus_communis	pycom04g20120
rosa_chinensis	RchiOBHm_Chr3g0450151
rosa_laevigata	RLG00000025751
rosa_multiflora	Rmu_sc0010184.1_g000006 Rmu_sc0010184.1_g000016
rosa_roxburghii	Rroxscaffold_6G00427910
rosa_rugosa	Rorug02G0625900
rosa_samantha	Rh3AG025200 Rh3BG025800 Rh3BG323000 Rh3CG024700 Rh3DG025800
rosa_wichuraiana	Rw3G002020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	883
AccB1I	GGYRCC	2 cut(s)	402, 883
AccI	GTMKAC	1 cut(s)	75
AccII	CGCG	1 cut(s)	1207
AciI	CCGC	3 cut(s)	967, 1139, 1207
AclWI	GGATC	4 cut(s)	738, 913, 1053, 1080
AcoI	YGGCCR	1 cut(s)	177
AcsI	RAATTY	3 cut(s)	379, 503, 682
AcuI	CTGAAG	1 cut(s)	84
AcyI	GRCGYC	1 cut(s)	403
AdeI	CACNNNGTG	1 cut(s)	647
AfaI	GTAC	4 cut(s)	197, 284, 689, 885
AfiI	CCNNNNNNNGG	3 cut(s)	198, 880, 954
AflIII	ACRYGT	1 cut(s)	388
AjnI	CCWGG	2 cut(s)	609, 643
AluBI	AGCT	7 cut(s)	523, 542, 586, 634, 769, 825, 974
AluI	AGCT	7 cut(s)	523, 542, 586, 634, 769, 825, 974
Alw21I	GWGCWC	1 cut(s)	525
Alw26I	GTCTC	3 cut(s)	93, 98, 724
AlwI	GGATC	4 cut(s)	738, 913, 1053, 1080
AoxI	GGCC	2 cut(s)	177, 261
ApeKI	GCWGC	2 cut(s)	44, 614
ApoI	RAATTY	3 cut(s)	379, 503, 682
Asp700I	GAANNNNTTC	2 cut(s)	381, 1106
Asp718I	GGTACC	1 cut(s)	883
AspLEI	GCGC	1 cut(s)	405
AsuHPI	GGTGA	3 cut(s)	633, 809, 1022
AsuNHI	GCTAGC	1 cut(s)	1165
BalI	TGGCCA	1 cut(s)	179
BanI	GGYRCC	2 cut(s)	402, 883
BanII	GRGCYC	1 cut(s)	525
Bbv12I	GWGCWC	1 cut(s)	525
BbvI	GCAGC	2 cut(s)	31, 601
BccI	CCATC	1 cut(s)	1001
BciT130I	CCWGG	2 cut(s)	611, 645
BclI	TGATCA	1 cut(s)	994
BcoDI	GTCTC	3 cut(s)	93, 98, 724
BfaI	CTAG	2 cut(s)	273, 1166
BfoI	RGCGCY	1 cut(s)	406
BglII	AGATCT	2 cut(s)	425, 856
BisI	GCNGC	3 cut(s)	45, 615, 967
BlsI	GCNGC	3 cut(s)	46, 616, 968
Bme1390I	CCNGG	2 cut(s)	611, 645
BmiI	GGNNCC	2 cut(s)	404, 885
BmrFI	CCNGG	2 cut(s)	611, 645
BmrI	ACTGGG	2 cut(s)	408, 486
BmsI	GCATC	4 cut(s)	535, 703, 797, 1126
BmtI	GCTAGC	1 cut(s)	1169
BmuI	ACTGGG	2 cut(s)	408, 486
BpmI	CTGGAG	1 cut(s)	509
BsaAI	YACGTR	1 cut(s)	389
BsaHI	GRCGYC	1 cut(s)	403
BsaI	GGTCTC	2 cut(s)	93, 98
BsaXI	ACNNNNNCTCC	2 cut(s)	324, 354
Bsc4I	CCNNNNNNNGG	3 cut(s)	198, 880, 954
Bse1I	ACTGG	2 cut(s)	403, 481
BseBI	CCWGG	2 cut(s)	611, 645
BseGI	GGATG	1 cut(s)	788
BseLI	CCNNNNNNNGG	3 cut(s)	198, 880, 954
BseMII	CTCAG	3 cut(s)	528, 644, 720
BseNI	ACTGG	2 cut(s)	403, 481
BseRI	GAGGAG	1 cut(s)	501
BseXI	GCAGC	2 cut(s)	31, 601
BsgI	GTGCAG	2 cut(s)	127, 1172
Bsh1236I	CGCG	1 cut(s)	1207
BshFI	GGCC	2 cut(s)	179, 263
BshNI	GGYRCC	2 cut(s)	402, 883
BsiHKAI	GWGCWC	1 cut(s)	525
BslI	CCNNNNNNNGG	3 cut(s)	198, 880, 954
BsmAI	GTCTC	3 cut(s)	93, 98, 724
BsmI	GAATGC	1 cut(s)	755
BsnI	GGCC	2 cut(s)	179, 263
Bso31I	GGTCTC	2 cut(s)	93, 98
Bsp1286I	GDGCHC	1 cut(s)	525
Bsp1407I	TGTACA	1 cut(s)	195
Bsp143I	GATC	8 cut(s)	66, 425, 730, 856, 905, 994, 1045, 1072
BspACI	CCGC	3 cut(s)	967, 1139, 1207
BspANI	GGCC	2 cut(s)	179, 263
BspCNI	CTCAG	3 cut(s)	527, 643, 719
BspFNI	CGCG	1 cut(s)	1207
BspHI	TCATGA	1 cut(s)	532
BspLI	GGNNCC	2 cut(s)	404, 885
BspOI	GCTAGC	1 cut(s)	1169
BspPI	GGATC	4 cut(s)	738, 913, 1053, 1080
BspQI	GCTCTTC	1 cut(s)	513
BspT107I	GGYRCC	2 cut(s)	402, 883
BspTNI	GGTCTC	2 cut(s)	93, 98
BsrGI	TGTACA	1 cut(s)	195
BsrI	ACTGG	2 cut(s)	403, 481
BssMI	GATC	8 cut(s)	66, 425, 730, 856, 905, 994, 1045, 1072
BssNI	GRCGYC	1 cut(s)	403
Bst2UI	CCWGG	2 cut(s)	611, 645
Bst4CI	ACNGT	2 cut(s)	205, 373
Bst6I	CTCTTC	3 cut(s)	513, 629, 873
BstACI	GRCGYC	1 cut(s)	403
BstAUI	TGTACA	1 cut(s)	195
BstBAI	YACGTR	1 cut(s)	389
BstC8I	GCNNGC	2 cut(s)	249, 1167
BstDEI	CTNAG	4 cut(s)	429, 514, 630, 706
BstENI	CCTNNNNNAGG	1 cut(s)	878
BstF5I	GGATG	1 cut(s)	788
BstFNI	CGCG	1 cut(s)	1207
BstH2I	RGCGCY	1 cut(s)	406
BstHHI	GCGC	1 cut(s)	405
BstKTI	GATC	8 cut(s)	69, 428, 733, 859, 908, 997, 1048, 1075
BstMAI	GTCTC	3 cut(s)	93, 98, 724
BstMBI	GATC	8 cut(s)	66, 425, 730, 856, 905, 994, 1045, 1072
BstMWI	GCNNNNNNNGC	3 cut(s)	269, 944, 1171
BstNI	CCWGG	2 cut(s)	611, 645
BstSCI	CCNGG	2 cut(s)	609, 643
BstUI	CGCG	1 cut(s)	1207
BstV1I	GCAGC	2 cut(s)	31, 601
BstX2I	RGATCY	2 cut(s)	425, 856
BstYI	RGATCY	2 cut(s)	425, 856
BsuRI	GGCC	2 cut(s)	179, 263
BtsCI	GGATG	1 cut(s)	788
BtsIMutI	CAGTG	2 cut(s)	927, 1060
Cac8I	GCNNGC	2 cut(s)	249, 1167
CciI	TCATGA	1 cut(s)	532
CfoI	GCGC	1 cut(s)	405
CseI	GACGC	2 cut(s)	422, 857
CsiI	ACCWGGT	1 cut(s)	643
Csp6I	GTAC	4 cut(s)	196, 283, 688, 884
CviAII	CATG	9 cut(s)	175, 259, 407, 482, 533, 670, 913, 1171, 1197
CviQI	GTAC	4 cut(s)	196, 283, 688, 884
DdeI	CTNAG	4 cut(s)	429, 514, 630, 706
DinI	GGCGCC	1 cut(s)	404
DpnI	GATC	8 cut(s)	68, 427, 732, 858, 907, 996, 1047, 1074
DpnII	GATC	8 cut(s)	66, 425, 730, 856, 905, 994, 1045, 1072
DraI	TTTAAA	1 cut(s)	501
DraIII	CACNNNGTG	1 cut(s)	647
EaeI	YGGCCR	1 cut(s)	177
Eam1104I	CTCTTC	3 cut(s)	513, 629, 873
EarI	CTCTTC	3 cut(s)	513, 629, 873
Ecl136II	GAGCTC	1 cut(s)	523
Eco24I	GRGCYC	1 cut(s)	525
Eco31I	GGTCTC	2 cut(s)	93, 98
Eco53kI	GAGCTC	1 cut(s)	523
Eco57I	CTGAAG	1 cut(s)	84
EcoICRI	GAGCTC	1 cut(s)	523
EcoNI	CCTNNNNNAGG	1 cut(s)	878
EcoRII	CCWGG	2 cut(s)	609, 643
EcoT22I	ATGCAT	1 cut(s)	790
EcoT38I	GRGCYC	1 cut(s)	525
EgeI	GGCGCC	1 cut(s)	404
EheI	GGCGCC	1 cut(s)	404
FaeI	CATG	9 cut(s)	178, 262, 410, 485, 536, 673, 916, 1174, 1200
FatI	CATG	9 cut(s)	174, 258, 406, 481, 532, 669, 912, 1170, 1196
FbaI	TGATCA	1 cut(s)	994
FblI	GTMKAC	1 cut(s)	75
Fnu4HI	GCNGC	3 cut(s)	45, 615, 967
FokI	GGATG	1 cut(s)	775
FriOI	GRGCYC	1 cut(s)	525
Fsp4HI	GCNGC	3 cut(s)	45, 615, 967
FspBI	CTAG	2 cut(s)	273, 1166
GlaI	GCGC	1 cut(s)	404
GluI	GCNGC	3 cut(s)	45, 615, 967
GsuI	CTGGAG	1 cut(s)	509
HaeII	RGCGCY	1 cut(s)	406
HaeIII	GGCC	2 cut(s)	179, 263
HgaI	GACGC	2 cut(s)	422, 857
HhaI	GCGC	1 cut(s)	405
Hin1I	GRCGYC	1 cut(s)	403
Hin1II	CATG	9 cut(s)	178, 262, 410, 485, 536, 673, 916, 1174, 1200
Hin6I	GCGC	1 cut(s)	403
HinP1I	GCGC	1 cut(s)	403
HincII	GTYRAC	1 cut(s)	837
HindII	GTYRAC	1 cut(s)	837
HindIII	AAGCTT	1 cut(s)	823
HinfI	GANTC	6 cut(s)	512, 529, 704, 932, 1031, 1142
HphI	GGTGA	3 cut(s)	633, 809, 1022
Hpy166II	GTNNAC	3 cut(s)	76, 601, 837
Hpy188I	TCNGA	6 cut(s)	103, 517, 709, 994, 1091, 1124
Hpy188III	TCNNGA	5 cut(s)	509, 526, 533, 829, 1043
Hpy8I	GTNNAC	3 cut(s)	76, 601, 837
Hpy99I	CGWCG	1 cut(s)	873
HpyAV	CCTTC	2 cut(s)	102, 443
HpyCH4III	ACNGT	2 cut(s)	205, 373
HpyCH4IV	ACGT	1 cut(s)	388
HpyCH4V	TGCA	6 cut(s)	115, 144, 755, 788, 842, 1153
HpyF10VI	GCNNNNNNNGC	3 cut(s)	269, 944, 1171
HpyF3I	CTNAG	4 cut(s)	429, 514, 630, 706
HpySE526I	ACGT	1 cut(s)	388
Hsp92I	GRCGYC	1 cut(s)	403
Hsp92II	CATG	9 cut(s)	178, 262, 410, 485, 536, 673, 916, 1174, 1200
HspAI	GCGC	1 cut(s)	403
KasI	GGCGCC	1 cut(s)	402
KpnI	GGTACC	1 cut(s)	887
Ksp22I	TGATCA	1 cut(s)	994
Kzo9I	GATC	8 cut(s)	66, 425, 730, 856, 905, 994, 1045, 1072
LguI	GCTCTTC	1 cut(s)	513
LmnI	GCTCC	2 cut(s)	528, 583
Lsp1109I	GCAGC	2 cut(s)	31, 601
LweI	GCATC	4 cut(s)	535, 703, 797, 1126
MabI	ACCWGGT	1 cut(s)	643
MaeI	CTAG	2 cut(s)	273, 1166
MaeII	ACGT	1 cut(s)	388
MaeIII	GTNAC	2 cut(s)	367, 889
MalI	GATC	8 cut(s)	68, 427, 732, 858, 907, 996, 1047, 1074
MboI	GATC	8 cut(s)	66, 425, 730, 856, 905, 994, 1045, 1072
MboII	GAAGA	5 cut(s)	90, 530, 616, 890, 1145
MfeI	CAATTG	2 cut(s)	16, 124
MflI	RGATCY	2 cut(s)	425, 856
MhlI	GDGCHC	1 cut(s)	525
MlsI	TGGCCA	1 cut(s)	179
MluNI	TGGCCA	1 cut(s)	179
Mly113I	GGCGCC	1 cut(s)	403
MlyI	GAGTC	3 cut(s)	506, 538, 698
MnlI	CCTC	8 cut(s)	157, 225, 337, 350, 479, 874, 1000, 1063
Mox20I	TGGCCA	1 cut(s)	179
Mph1103I	ATGCAT	1 cut(s)	790
MroXI	GAANNNNTTC	2 cut(s)	381, 1106
MscI	TGGCCA	1 cut(s)	179
MseI	TTAA	6 cut(s)	162, 207, 395, 440, 500, 807
Msp20I	TGGCCA	1 cut(s)	179
MspR9I	CCNGG	2 cut(s)	611, 645
MunI	CAATTG	2 cut(s)	16, 124
Mva1269I	GAATGC	1 cut(s)	755
MvaI	CCWGG	2 cut(s)	611, 645
MvnI	CGCG	1 cut(s)	1207
MwoI	GCNNNNNNNGC	3 cut(s)	269, 944, 1171
NarI	GGCGCC	1 cut(s)	403
NdeII	GATC	8 cut(s)	66, 425, 730, 856, 905, 994, 1045, 1072
NheI	GCTAGC	1 cut(s)	1165
NlaIII	CATG	9 cut(s)	178, 262, 410, 485, 536, 673, 916, 1174, 1200
NlaIV	GGNNCC	2 cut(s)	404, 885
NmuCI	GTSAC	2 cut(s)	367, 889
NsiI	ATGCAT	1 cut(s)	790
PagI	TCATGA	1 cut(s)	532
PciSI	GCTCTTC	1 cut(s)	513
PctI	GAATGC	1 cut(s)	755
PdmI	GAANNNNTTC	2 cut(s)	381, 1106
PfeI	GAWTC	3 cut(s)	932, 1031, 1142
PflFI	GACNNNGTC	1 cut(s)	1118
PkrI	GCNGC	3 cut(s)	46, 616, 968
PleI	GAGTC	3 cut(s)	506, 537, 698
PluTI	GGCGCC	1 cut(s)	406
PpsI	GAGTC	3 cut(s)	506, 537, 698
Ppu21I	YACGTR	1 cut(s)	389
Psp124BI	GAGCTC	1 cut(s)	525
Psp6I	CCWGG	2 cut(s)	609, 643
PspGI	CCWGG	2 cut(s)	609, 643
PspN4I	GGNNCC	2 cut(s)	404, 885
PsuI	RGATCY	2 cut(s)	425, 856
PsyI	GACNNNGTC	1 cut(s)	1118
RsaI	GTAC	4 cut(s)	197, 284, 689, 885
RsaNI	GTAC	4 cut(s)	196, 283, 688, 884
SacI	GAGCTC	1 cut(s)	525
SapI	GCTCTTC	1 cut(s)	513
SaqAI	TTAA	6 cut(s)	162, 207, 395, 440, 500, 807
SatI	GCNGC	3 cut(s)	45, 615, 967
Sau3AI	GATC	8 cut(s)	66, 425, 730, 856, 905, 994, 1045, 1072
SchI	GAGTC	3 cut(s)	506, 538, 698
ScrFI	CCNGG	2 cut(s)	611, 645
SduI	GDGCHC	1 cut(s)	525
SexAI	ACCWGGT	1 cut(s)	643
SfaNI	GCATC	4 cut(s)	535, 703, 797, 1126
SfoI	GGCGCC	1 cut(s)	404
SsiI	CCGC	3 cut(s)	967, 1139, 1207
SspDI	GGCGCC	1 cut(s)	402
SspMI	CTAG	2 cut(s)	273, 1166
SstI	GAGCTC	1 cut(s)	525
StyD4I	CCNGG	2 cut(s)	609, 643
TaaI	ACNGT	2 cut(s)	205, 373
TaiI	ACGT	1 cut(s)	391
TaqI	TCGA	4 cut(s)	65, 169, 355, 850
TatI	WGTACW	1 cut(s)	195
TauI	GCSGC	1 cut(s)	969
TfiI	GAWTC	3 cut(s)	932, 1031, 1142
Tru1I	TTAA	6 cut(s)	162, 207, 395, 440, 500, 807
Tru9I	TTAA	6 cut(s)	162, 207, 395, 440, 500, 807
TscAI	CASTG	2 cut(s)	934, 1060
TseFI	GTSAC	2 cut(s)	367, 889
TseI	GCWGC	2 cut(s)	44, 614
Tsp45I	GTSAC	2 cut(s)	367, 889
TspDTI	ATGAA	9 cut(s)	84, 321, 378, 423, 462, 575, 686, 1029, 1134
TspGWI	ACGGA	1 cut(s)	781
TspRI	CASTG	2 cut(s)	934, 1060
Tth111I	GACNNNGTC	1 cut(s)	1118
XagI	CCTNNNNNAGG	1 cut(s)	878
XapI	RAATTY	3 cut(s)	379, 503, 682
XmiI	GTMKAC	1 cut(s)	75
XmnI	GAANNNNTTC	2 cut(s)	381, 1106
XspI	CTAG	2 cut(s)	273, 1166
Zsp2I	ATGCAT	1 cut(s)	790

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.