AT1G09157

pollen sperm cell differentiation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0014103
Physical Location & Seq
Reverse (-)
2951635 .. 2952490
856 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G09157.1

Sequence Viewer

Length: 732 bp
ATGGAGAAAACAGAGGAAAGCGTCGGAATCAGAGTTTACACGACGACAACGACGCAAAATCCGTCACCAACATCGTCTCGGTCGCCCAAACCTGTCCCTCTCTCTTCACTGCCTATGCTTCCGGCAGGAGCCGCCGCGGGAGGAGGAAAAGGTAGAAAACGTCGCATGGTGGCGAAAGGAGTTCAAAAAACGGTTTCGAAGACATCAATGCTCGTCAATTTCCTTCCGACAGGAACTCTCTTGATGTTCGAAATGGTTCTTCCGACAATCTACCGTGACGGAGACTGTAACGGAATCAACACACTCATGATTCATCTTCTCTTGCTTCTTTGCGCAATGTCTTGTTTCTTCTTCCATTTCACCGACAGTTTCAAAGCCTCCGATGGGAAAATTTACTACGGTTTTGTGACTCCACGTGGACTCGCGGTGTTCATGAAACCACCCTCGCCGGGGTTTGGAGGCGGAGATGTGATTGCAGAGAAGGAGATTCCGGTGACGGATGAGAGGTATAAGTTGAGGGTTAATGACTTTGTGCATTCAGTGATGAGTGTTTTGGTTTTTATGGCGATCGCGTTTTCGGATCGGAGAGTCACAGGGTGTTTGTTTCCAGGAAAAGAGAAGGAGATGGATCAAGTTATGGAGAGTTTTCCGTTAATGGTCGGAATTGTTTGCAGTGCTTTGTTTCTTGTTTTTCCGACCAGTCGATACGGTGTCGGATGCATGTCTACATAA

Protein Analysis

243

Amino Acids

26.54

Weight (kDa)

9.15

Isoelectric Point (pI)

40.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF679 PF05078 67 - 240 8e-63 Protein of unknown function (DUF679)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014103)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09157 AT5G39650
fragaria_vesca FvH4_6g48440
malus_domestica MD00G1130800.v1.1 MD09G1051900.v1.1
prunus_persica Prupe.3G266800_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0168351
rosa_laevigata RLG00000021769
rosa_multiflora Rmu_sc0003354.1_g000017
rosa_roxburghii Rroxscaffold_2G00083120
rosa_rugosa Rorug02G0533100
rosa_samantha Rh2AG602200 Rh2BG615500 Rh2CG583200 Rh2DG625700
rosa_wichuraiana Rw0G019820 Rw2G049990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 334
AccI GTMKAC 1 cut(s) 725
AccII CGCG 3 cut(s) 137, 425, 572
AciI CCGC 5 cut(s) 132, 135, 137, 425, 462
AclWI GGATC 2 cut(s) 588, 636
AcsI RAATTY 1 cut(s) 390
AcvI CACGTG 1 cut(s) 416
AdeI CACNNNGTG 1 cut(s) 597
AfiI CCNNNNNNNGG 4 cut(s) 384, 449, 450, 455
AgsI TTSAA 2 cut(s) 185, 373
AjnI CCWGG 1 cut(s) 607
Alw26I GTCTC 2 cut(s) 81, 276
AlwI GGATC 2 cut(s) 588, 636
ApoI RAATTY 1 cut(s) 390
AsiSI GCGATCGC 1 cut(s) 570
Asp700I GAANNNNTTC 1 cut(s) 255
AspLEI GCGC 1 cut(s) 335
AsuC2I CCSGG 1 cut(s) 450
AsuHPI GGTGA 3 cut(s) 57, 352, 505
AsuII TTCGAA 2 cut(s) 197, 249
BbrPI CACGTG 1 cut(s) 416
BbsI GAAGAC 1 cut(s) 206
BccI CCATC 2 cut(s) 377, 619
BciT130I CCWGG 1 cut(s) 609
BcnI CCSGG 1 cut(s) 450
BcoDI GTCTC 2 cut(s) 81, 276
BisI GCNGC 2 cut(s) 132, 135
BlsI GCNGC 2 cut(s) 133, 136
Bme1390I CCNGG 2 cut(s) 450, 609
BmiI GGNNCC 1 cut(s) 130
BmrFI CCNGG 2 cut(s) 450, 609
BmsI GCATC 1 cut(s) 707
BpiI GAAGAC 1 cut(s) 206
Bpu14I TTCGAA 2 cut(s) 197, 249
BpuMI CCSGG 1 cut(s) 450
BsaAI YACGTR 1 cut(s) 416
BsaJI CCNNGG 2 cut(s) 135, 449
BsaWI WCCGGW 1 cut(s) 490
Bsc4I CCNNNNNNNGG 4 cut(s) 384, 449, 450, 455
Bse1I ACTGG 1 cut(s) 699
Bse3DI GCAATG 1 cut(s) 342
BseBI CCWGG 1 cut(s) 609
BseDI CCNNGG 2 cut(s) 135, 449
BseGI GGATG 2 cut(s) 505, 722
BseLI CCNNNNNNNGG 4 cut(s) 384, 449, 450, 455
BseMI GCAATG 1 cut(s) 342
BseNI ACTGG 1 cut(s) 699
BseRI GAGGAG 1 cut(s) 156
Bsh1236I CGCG 3 cut(s) 137, 425, 572
Bsh1285I CGRYCG 2 cut(s) 83, 570
BsiEI CGRYCG 2 cut(s) 83, 570
BsiSI CCGG 3 cut(s) 122, 449, 491
BslFI GGGAC 1 cut(s) 80
BslI CCNNNNNNNGG 4 cut(s) 384, 449, 450, 455
BsmAI GTCTC 2 cut(s) 81, 276
BsmBI CGTCTC 1 cut(s) 81
BsmFI GGGAC 1 cut(s) 80
BsmI GAATGC 1 cut(s) 535
Bsp119I TTCGAA 2 cut(s) 197, 249
Bsp143I GATC 3 cut(s) 567, 580, 628
BspACI CCGC 5 cut(s) 132, 135, 137, 425, 462
BspFNI CGCG 3 cut(s) 137, 425, 572
BspHI TCATGA 2 cut(s) 306, 432
BspLI GGNNCC 1 cut(s) 130
BspPI GGATC 2 cut(s) 588, 636
BspT104I TTCGAA 2 cut(s) 197, 249
BsrDI GCAATG 1 cut(s) 342
BsrI ACTGG 1 cut(s) 699
BssECI CCNNGG 2 cut(s) 135, 449
BssMI GATC 3 cut(s) 567, 580, 628
Bst2UI CCWGG 1 cut(s) 609
Bst4CI ACNGT 6 cut(s) 193, 275, 287, 368, 401, 710
Bst6I CTCTTC 1 cut(s) 109
BstBAI YACGTR 1 cut(s) 416
BstBI TTCGAA 2 cut(s) 197, 249
BstDSI CCRYGG 1 cut(s) 135
BstF5I GGATG 2 cut(s) 505, 722
BstFNI CGCG 3 cut(s) 137, 425, 572
BstHHI GCGC 1 cut(s) 335
BstKTI GATC 3 cut(s) 570, 583, 631
BstMAI GTCTC 2 cut(s) 81, 276
BstMBI GATC 3 cut(s) 567, 580, 628
BstMCI CGRYCG 2 cut(s) 83, 570
BstMWI GCNNNNNNNGC 1 cut(s) 131
BstNI CCWGG 1 cut(s) 609
BstNSI RCATGY 1 cut(s) 724
BstSCI CCNGG 2 cut(s) 448, 607
BstUI CGCG 3 cut(s) 137, 425, 572
BstV2I GAAGAC 1 cut(s) 206
BtgI CCRYGG 1 cut(s) 135
BtsCI GGATG 2 cut(s) 505, 722
BtsI GCAGTG 2 cut(s) 107, 679
BtsIMutI CAGTG 3 cut(s) 107, 546, 679
CciI TCATGA 2 cut(s) 306, 432
CfoI GCGC 1 cut(s) 335
Cfr42I CCGCGG 1 cut(s) 138
CseI GACGC 2 cut(s) 10, 61
CviAII CATG 4 cut(s) 166, 307, 433, 721
CviJI RGCY 2 cut(s) 131, 377
CviKI_1 RGCY 2 cut(s) 131, 377
DpnI GATC 3 cut(s) 569, 582, 630
DpnII GATC 3 cut(s) 567, 580, 628
DraIII CACNNNGTG 1 cut(s) 597
Eam1104I CTCTTC 1 cut(s) 109
EarI CTCTTC 1 cut(s) 109
EciI GGCGGA 1 cut(s) 477
Eco72I CACGTG 1 cut(s) 416
EcoRII CCWGG 1 cut(s) 607
EcoT22I ATGCAT 1 cut(s) 722
Esp3I CGTCTC 1 cut(s) 81
FaeI CATG 4 cut(s) 169, 310, 436, 724
FaiI YATR 9 cut(s) 116, 167, 308, 434, 510, 563, 638, 722, 730
FaqI GGGAC 1 cut(s) 80
FatI CATG 4 cut(s) 165, 306, 432, 720
FauI CCCGC 1 cut(s) 130
FblI GTMKAC 1 cut(s) 725
Fnu4HI GCNGC 2 cut(s) 132, 135
FokI GGATG 1 cut(s) 512
Fsp4HI GCNGC 2 cut(s) 132, 135
FspI TGCGCA 1 cut(s) 334
GlaI GCGC 1 cut(s) 334
GluI GCNGC 2 cut(s) 132, 135
HapII CCGG 3 cut(s) 122, 449, 491
HgaI GACGC 2 cut(s) 10, 61
HhaI GCGC 1 cut(s) 335
Hin1II CATG 4 cut(s) 169, 310, 436, 724
Hin6I GCGC 1 cut(s) 333
HinP1I GCGC 1 cut(s) 333
HinfI GANTC 7 cut(s) 27, 294, 310, 409, 420, 487, 588
HpaII CCGG 3 cut(s) 122, 449, 491
HphI GGTGA 3 cut(s) 57, 352, 505
Hpy166II GTNNAC 3 cut(s) 37, 419, 726
Hpy188III TCNNGA 3 cut(s) 241, 307, 433
Hpy8I GTNNAC 3 cut(s) 37, 419, 726
Hpy99I CGWCG 4 cut(s) 26, 46, 55, 165
HpyAV CCTTC 3 cut(s) 233, 475, 613
HpyCH4III ACNGT 6 cut(s) 193, 275, 287, 368, 401, 710
HpyCH4IV ACGT 2 cut(s) 160, 415
HpyCH4V TGCA 4 cut(s) 476, 535, 672, 720
HpyF10VI GCNNNNNNNGC 1 cut(s) 131
HpySE526I ACGT 2 cut(s) 160, 415
Hsp92II CATG 4 cut(s) 169, 310, 436, 724
HspAI GCGC 1 cut(s) 333
KspI CCGCGG 1 cut(s) 138
Kzo9I GATC 3 cut(s) 567, 580, 628
LmnI GCTCC 1 cut(s) 128
LweI GCATC 1 cut(s) 707
MaeII ACGT 2 cut(s) 160, 415
MaeIII GTNAC 6 cut(s) 63, 275, 287, 406, 493, 589
MalI GATC 3 cut(s) 569, 582, 630
MboI GATC 3 cut(s) 567, 580, 628
MboII GAAGA 6 cut(s) 96, 211, 251, 308, 340, 343
MluCI AATT 3 cut(s) 217, 390, 663
MlyI GAGTC 3 cut(s) 403, 414, 597
MmeI TCCRAC 6 cut(s) 4, 251, 287, 640, 694, 719
MnlI CCTC 9 cut(s) 7, 108, 134, 137, 388, 452, 454, 498, 510
Mph1103I ATGCAT 1 cut(s) 722
MroXI GAANNNNTTC 1 cut(s) 255
MseI TTAA 2 cut(s) 522, 653
MslI CAYNNNNRTG 1 cut(s) 305
MspA1I CMGCKG 1 cut(s) 137
MspI CCGG 3 cut(s) 122, 449, 491
MspR9I CCNGG 2 cut(s) 450, 609
Mva1269I GAATGC 1 cut(s) 535
MvaI CCWGG 1 cut(s) 609
MvnI CGCG 3 cut(s) 137, 425, 572
MwoI GCNNNNNNNGC 1 cut(s) 131
NciI CCSGG 1 cut(s) 450
NdeII GATC 3 cut(s) 567, 580, 628
NlaIII CATG 4 cut(s) 169, 310, 436, 724
NlaIV GGNNCC 1 cut(s) 130
NmuCI GTSAC 5 cut(s) 63, 275, 406, 493, 589
NsbI TGCGCA 1 cut(s) 334
NsiI ATGCAT 1 cut(s) 722
NspI RCATGY 1 cut(s) 724
NspV TTCGAA 2 cut(s) 197, 249
PagI TCATGA 2 cut(s) 306, 432
PcsI WCGNNNNNNNCGW 2 cut(s) 47, 59
PctI GAATGC 1 cut(s) 535
PdmI GAANNNNTTC 1 cut(s) 255
PfeI GAWTC 4 cut(s) 27, 294, 310, 487
PfoI TCCNGGA 1 cut(s) 607
PkrI GCNGC 2 cut(s) 133, 136
Ple19I CGATCG 1 cut(s) 570
PleI GAGTC 3 cut(s) 403, 414, 596
PmaCI CACGTG 1 cut(s) 416
PmlI CACGTG 1 cut(s) 416
PpsI GAGTC 3 cut(s) 403, 414, 596
Ppu21I YACGTR 1 cut(s) 416
Psp6I CCWGG 1 cut(s) 607
PspCI CACGTG 1 cut(s) 416
PspGI CCWGG 1 cut(s) 607
PspN4I GGNNCC 1 cut(s) 130
PvuI CGATCG 1 cut(s) 570
RgaI GCGATCGC 1 cut(s) 570
RseI CAYNNNNRTG 1 cut(s) 305
SacII CCGCGG 1 cut(s) 138
SaqAI TTAA 2 cut(s) 522, 653
SatI GCNGC 2 cut(s) 132, 135
Sau3AI GATC 3 cut(s) 567, 580, 628
SchI GAGTC 3 cut(s) 403, 414, 597
ScrFI CCNGG 2 cut(s) 450, 609
SetI ASST 5 cut(s) 94, 154, 163, 418, 509
SfaAI GCGATCGC 1 cut(s) 570
SfaNI GCATC 1 cut(s) 707
Sfr303I CCGCGG 1 cut(s) 138
SfuI TTCGAA 2 cut(s) 197, 249
SgfI GCGATCGC 1 cut(s) 570
SgrBI CCGCGG 1 cut(s) 138
SmiMI CAYNNNNRTG 1 cut(s) 305
Sse9I AATT 3 cut(s) 217, 390, 663
SsiI CCGC 5 cut(s) 132, 135, 137, 425, 462
StyD4I CCNGG 2 cut(s) 448, 607
TaaI ACNGT 6 cut(s) 193, 275, 287, 368, 401, 710
TaiI ACGT 2 cut(s) 163, 418
TaqI TCGA 3 cut(s) 197, 249, 703
TaqII GACCGA 1 cut(s) 69
TasI AATT 3 cut(s) 217, 390, 663
TauI GCSGC 2 cut(s) 134, 137
TfiI GAWTC 4 cut(s) 27, 294, 310, 487
Tru1I TTAA 2 cut(s) 522, 653
Tru9I TTAA 2 cut(s) 522, 653
TscAI CASTG 3 cut(s) 114, 546, 679
TseFI GTSAC 5 cut(s) 63, 275, 406, 493, 589
Tsp45I GTSAC 5 cut(s) 63, 275, 406, 493, 589
TspDTI ATGAA 3 cut(s) 302, 421, 449
TspGWI ACGGA 5 cut(s) 51, 294, 306, 512, 639
TspRI CASTG 3 cut(s) 114, 546, 679
XapI RAATTY 1 cut(s) 390
XceI RCATGY 1 cut(s) 724
XmiI GTMKAC 1 cut(s) 725
XmnI GAANNNNTTC 1 cut(s) 255
Zsp2I ATGCAT 1 cut(s) 722
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.