Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0014103

Physical Location & Seq

Genomic Coordinates Reverse (-)

24975890 .. 24976798

Gene Structure 909 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G266800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGATCAGAAAAGCGATGGAGTTGGGATCAAAATCTACAACAACGCAGTGTACGGGGACCCACATGAAGACGAGTCCGCCAAGTCACCAAAGCCACCTTCTTCTTCCTCACATTCCCTGCCTCTGGTACGACTGAACCCAGACCACATACAAGGCAGGAAACGACGTGCCGTTGCGAAGGGGGTCCAGAAGACCTTATCCAAGACCTCCATGCTCGCCAACTTTCTTCCCACGGGCACCCTCCTGACCTTCGAAATGGTGCTTCCCGCCATTTACCGCAGCGGCGAGTGCACTCGTGTCACCAATATGATGACCCACGTCCTCCTGGGCCTGTGTGCCATGTCATGCTTCTTCTTCCACTTCACAGACAGTTTCCGTGGGCCCGATGGGAAGTTATTTTACGGGTTTGTGACTCCAAAAGGGCTGGCGGTGTTTAAACCGGGCCTGCCCGTGGAGGTGCCCAAGGACGAGAGGTACAAACTGGGCCTAACGGACTTCGTTCACGCCGCTATGTCCGTTATGGTGTTTGCCGCTATCGCGTTTTCTGATAGGCGCGTTACGGACTGTTTGTTTCCGGGGCACGAGAAGGAGATGGATGAAGTGATGGAGAGTTTTCCGTTGATGGTGGGGATCGTGTGCAGCGGATTGTTTCTCGTGTTTCCTACTACTCGCTACGGGATTGGATGCGCGGCTTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000325 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009705 GO:0009987 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0031090 GO:0032501 GO:0032502 GO:0032504 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0051704 GO:0055046 GO:0071840 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF679

Protein Analysis

233

Amino Acids

25.5

Weight (kDa)

8.5

Isoelectric Point (pI)

34.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09157 AT5G39650
fragaria_vesca	FvH4_6g48440
malus_domestica	MD00G1130800.v1.1 MD09G1051900.v1.1
prunus_persica	Prupe.3G266800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0168351
rosa_laevigata	RLG00000021769
rosa_multiflora	Rmu_sc0003354.1_g000017
rosa_roxburghii	Rroxscaffold_2G00083120
rosa_rugosa	Rorug02G0533100
rosa_samantha	Rh2AG602200 Rh2BG615500 Rh2CG583200 Rh2DG625700
rosa_wichuraiana	Rw0G019820 Rw2G049990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	236, 457
AccII	CGCG	3 cut(s)	539, 555, 689
AciI	CCGC	9 cut(s)	78, 267, 277, 282, 428, 507, 531, 642, 689
AclWI	GGATC	3 cut(s)	12, 35, 638
AfaI	GTAC	3 cut(s)	53, 129, 476
AfiI	CCNNNNNNNGG	2 cut(s)	124, 451
AjiI	CACGTC	2 cut(s)	167, 319
AjnI	CCWGG	1 cut(s)	324
AjuI	GAANNNNNNNTTGG	2 cut(s)	82, 114
Alw21I	GWGCWC	1 cut(s)	293
Alw44I	GTGCAC	1 cut(s)	289
AlwI	GGATC	3 cut(s)	12, 35, 638
AoxI	GGCC	4 cut(s)	328, 380, 442, 484
ApaI	GGGCCC	1 cut(s)	384
ApaLI	GTGCAC	1 cut(s)	289
ApeKI	GCWGC	2 cut(s)	279, 639
AspLEI	GCGC	2 cut(s)	555, 689
AspS9I	GGNCC	7 cut(s)	58, 184, 328, 380, 381, 442, 484
AsuC2I	CCSGG	2 cut(s)	441, 576
AsuHPI	GGTGA	2 cut(s)	78, 292
AsuII	TTCGAA	1 cut(s)	252
AvaII	GGWCC	2 cut(s)	58, 184
BaeGI	GKGCMC	5 cut(s)	239, 293, 384, 462, 582
BanI	GGYRCC	2 cut(s)	236, 457
BanII	GRGCYC	1 cut(s)	384
BarI	GAAGNNNNNNTAC	2 cut(s)	383, 415
BauI	CACGAG	3 cut(s)	294, 581, 653
BbsI	GAAGAC	2 cut(s)	75, 197
Bbv12I	GWGCWC	1 cut(s)	293
BbvI	GCAGC	2 cut(s)	291, 651
BccI	CCATC	5 cut(s)	11, 380, 586, 598, 616
BceAI	ACGGC	1 cut(s)	155
BciT130I	CCWGG	1 cut(s)	326
BcnI	CCSGG	2 cut(s)	441, 576
BisI	GCNGC	6 cut(s)	280, 283, 507, 531, 640, 690
BlsI	GCNGC	6 cut(s)	281, 284, 508, 532, 641, 691
Bme1390I	CCNGG	3 cut(s)	326, 441, 576
Bme18I	GGWCC	2 cut(s)	58, 184
BmgBI	CACGTC	2 cut(s)	167, 319
BmgT120I	GGNCC	7 cut(s)	58, 184, 328, 380, 381, 442, 484
BmiI	GGNNCC	6 cut(s)	59, 60, 185, 238, 382, 459
BmrFI	CCNGG	3 cut(s)	326, 441, 576
BmrI	ACTGGG	1 cut(s)	491
BmsI	GCATC	1 cut(s)	674
BmuI	ACTGGG	1 cut(s)	491
BoxI	GACNNNNGTC	1 cut(s)	317
BpiI	GAAGAC	2 cut(s)	75, 197
Bpu14I	TTCGAA	1 cut(s)	252
BpuMI	CCSGG	2 cut(s)	441, 576
BsaBI	GATNNNNATC	1 cut(s)	32
BsaJI	CCNNGG	6 cut(s)	231, 325, 376, 450, 462, 575
Bsc4I	CCNNNNNNNGG	2 cut(s)	124, 451
Bse1I	ACTGG	1 cut(s)	486
Bse8I	GATNNNNATC	1 cut(s)	32
BseBI	CCWGG	1 cut(s)	326
BseDI	CCNNGG	6 cut(s)	231, 325, 376, 450, 462, 575
BseGI	GGATG	2 cut(s)	601, 689
BseJI	GATNNNNATC	1 cut(s)	32
BseLI	CCNNNNNNNGG	2 cut(s)	124, 451
BseNI	ACTGG	1 cut(s)	486
BseSI	GKGCMC	5 cut(s)	239, 293, 384, 462, 582
BseXI	GCAGC	2 cut(s)	291, 651
BsgI	GTGCAG	1 cut(s)	658
Bsh1236I	CGCG	3 cut(s)	539, 555, 689
BshFI	GGCC	4 cut(s)	330, 382, 444, 486
BshNI	GGYRCC	2 cut(s)	236, 457
BsiHKAI	GWGCWC	1 cut(s)	293
BsiSI	CCGG	2 cut(s)	440, 575
BslFI	GGGAC	1 cut(s)	71
BslI	CCNNNNNNNGG	2 cut(s)	124, 451
BsmFI	GGGAC	1 cut(s)	71
BsnI	GGCC	4 cut(s)	330, 382, 444, 486
Bsp119I	TTCGAA	1 cut(s)	252
Bsp120I	GGGCCC	1 cut(s)	380
Bsp1286I	GDGCHC	5 cut(s)	239, 293, 384, 462, 582
Bsp143I	GATC	3 cut(s)	4, 27, 630
BspACI	CCGC	9 cut(s)	78, 267, 277, 282, 428, 507, 531, 642, 689
BspANI	GGCC	4 cut(s)	330, 382, 444, 486
BspFNI	CGCG	3 cut(s)	539, 555, 689
BspLI	GGNNCC	6 cut(s)	59, 60, 185, 238, 382, 459
BspPI	GGATC	3 cut(s)	12, 35, 638
BspT104I	TTCGAA	1 cut(s)	252
BspT107I	GGYRCC	2 cut(s)	236, 457
BsrI	ACTGG	1 cut(s)	486
BssECI	CCNNGG	6 cut(s)	231, 325, 376, 450, 462, 575
BssMI	GATC	3 cut(s)	4, 27, 630
BssSI	CACGAG	3 cut(s)	294, 581, 653
BssT1I	CCWWGG	1 cut(s)	462
Bst2BI	CACGAG	3 cut(s)	294, 581, 653
Bst2UI	CCWGG	1 cut(s)	326
Bst4CI	ACNGT	2 cut(s)	371, 566
BstBI	TTCGAA	1 cut(s)	252
BstC8I	GCNNGC	3 cut(s)	216, 426, 446
BstDSI	CCRYGG	3 cut(s)	231, 376, 450
BstF5I	GGATG	2 cut(s)	601, 689
BstFNI	CGCG	3 cut(s)	539, 555, 689
BstHHI	GCGC	2 cut(s)	555, 689
BstKTI	GATC	3 cut(s)	7, 30, 633
BstMBI	GATC	3 cut(s)	4, 27, 630
BstMWI	GCNNNNNNNGC	2 cut(s)	288, 536
BstNI	CCWGG	1 cut(s)	326
BstPAI	GACNNNNGTC	1 cut(s)	317
BstSCI	CCNGG	3 cut(s)	324, 439, 574
BstSLI	GKGCMC	5 cut(s)	239, 293, 384, 462, 582
BstUI	CGCG	3 cut(s)	539, 555, 689
BstV1I	GCAGC	2 cut(s)	291, 651
BstV2I	GAAGAC	2 cut(s)	75, 197
BsuRI	GGCC	4 cut(s)	330, 382, 444, 486
BtgI	CCRYGG	3 cut(s)	231, 376, 450
BtgZI	GCGATG	1 cut(s)	30
BtrI	CACGTC	2 cut(s)	167, 319
BtsCI	GGATG	2 cut(s)	601, 689
BtsI	GCAGTG	1 cut(s)	54
BtsIMutI	CAGTG	1 cut(s)	54
Cac8I	GCNNGC	3 cut(s)	216, 426, 446
CfoI	GCGC	2 cut(s)	555, 689
Cfr13I	GGNCC	7 cut(s)	58, 184, 328, 380, 381, 442, 484
Csp6I	GTAC	3 cut(s)	52, 128, 475
CviAII	CATG	4 cut(s)	65, 211, 340, 345
CviJI	RGCY	7 cut(s)	94, 330, 382, 424, 444, 486, 692
CviKI_1	RGCY	7 cut(s)	94, 330, 382, 424, 444, 486, 692
CviQI	GTAC	3 cut(s)	52, 128, 475
DpnI	GATC	3 cut(s)	6, 29, 632
DpnII	GATC	3 cut(s)	4, 27, 630
DraI	TTTAAA	1 cut(s)	436
EciI	GGCGGA	1 cut(s)	67
Eco130I	CCWWGG	1 cut(s)	462
Eco24I	GRGCYC	1 cut(s)	384
Eco47I	GGWCC	2 cut(s)	58, 184
EcoO109I	RGGNCCY	1 cut(s)	58
EcoRII	CCWGG	1 cut(s)	324
EcoT14I	CCWWGG	1 cut(s)	462
EcoT38I	GRGCYC	1 cut(s)	384
ErhI	CCWWGG	1 cut(s)	462
FaeI	CATG	4 cut(s)	68, 214, 343, 348
FaiI	YATR	8 cut(s)	66, 149, 212, 308, 341, 346, 512, 521
FaqI	GGGAC	1 cut(s)	71
FatI	CATG	4 cut(s)	64, 210, 339, 344
FauI	CCCGC	1 cut(s)	274
Fnu4HI	GCNGC	6 cut(s)	280, 283, 507, 531, 640, 690
FokI	GGATG	1 cut(s)	608
FriOI	GRGCYC	1 cut(s)	384
Fsp4HI	GCNGC	6 cut(s)	280, 283, 507, 531, 640, 690
GlaI	GCGC	2 cut(s)	554, 688
GluI	GCNGC	6 cut(s)	280, 283, 507, 531, 640, 690
HaeIII	GGCC	4 cut(s)	330, 382, 444, 486
HapII	CCGG	2 cut(s)	440, 575
HhaI	GCGC	2 cut(s)	555, 689
Hin1II	CATG	4 cut(s)	68, 214, 343, 348
Hin6I	GCGC	2 cut(s)	553, 687
HinP1I	GCGC	2 cut(s)	553, 687
HinfI	GANTC	2 cut(s)	74, 412
HpaII	CCGG	2 cut(s)	440, 575
HphI	GGTGA	2 cut(s)	78, 292
Hpy166II	GTNNAC	3 cut(s)	52, 291, 502
Hpy188I	TCNGA	2 cut(s)	9, 547
Hpy188III	TCNNGA	3 cut(s)	187, 244, 696
Hpy8I	GTNNAC	3 cut(s)	52, 291, 502
Hpy99I	CGWCG	1 cut(s)	168
HpyAV	CCTTC	4 cut(s)	108, 172, 259, 580
HpyCH4III	ACNGT	2 cut(s)	371, 566
HpyCH4IV	ACGT	2 cut(s)	166, 318
HpyCH4V	TGCA	2 cut(s)	291, 639
HpyF10VI	GCNNNNNNNGC	2 cut(s)	288, 536
HpySE526I	ACGT	2 cut(s)	166, 318
Hsp92II	CATG	4 cut(s)	68, 214, 343, 348
HspAI	GCGC	2 cut(s)	553, 687
KflI	GGGWCCC	1 cut(s)	58
Kzo9I	GATC	3 cut(s)	4, 27, 630
Lsp1109I	GCAGC	2 cut(s)	291, 651
LweI	GCATC	1 cut(s)	674
MaeII	ACGT	2 cut(s)	166, 318
MaeIII	GTNAC	4 cut(s)	84, 298, 409, 556
MalI	GATC	3 cut(s)	6, 29, 632
MboI	GATC	3 cut(s)	4, 27, 630
MboII	GAAGA	7 cut(s)	80, 93, 96, 202, 218, 343, 346
MhlI	GDGCHC	5 cut(s)	239, 293, 384, 462, 582
MlyI	GAGTC	2 cut(s)	83, 406
MnlI	CCTC	7 cut(s)	118, 132, 217, 251, 332, 448, 465
MseI	TTAA	1 cut(s)	435
MslI	CAYNNNNRTG	1 cut(s)	305
MspA1I	CMGCKG	2 cut(s)	282, 642
MspI	CCGG	2 cut(s)	440, 575
MspR9I	CCNGG	3 cut(s)	326, 441, 576
MssI	GTTTAAAC	1 cut(s)	436
MvaI	CCWGG	1 cut(s)	326
MvnI	CGCG	3 cut(s)	539, 555, 689
MwoI	GCNNNNNNNGC	2 cut(s)	288, 536
NciI	CCSGG	2 cut(s)	441, 576
NdeII	GATC	3 cut(s)	4, 27, 630
NlaIII	CATG	4 cut(s)	68, 214, 343, 348
NlaIV	GGNNCC	6 cut(s)	59, 60, 185, 238, 382, 459
NmuCI	GTSAC	3 cut(s)	84, 298, 409
NspV	TTCGAA	1 cut(s)	252
PkrI	GCNGC	6 cut(s)	281, 284, 508, 532, 641, 691
PleI	GAGTC	2 cut(s)	82, 406
PmeI	GTTTAAAC	1 cut(s)	436
PpsI	GAGTC	2 cut(s)	82, 406
PpuMI	RGGWCCY	1 cut(s)	58
PshAI	GACNNNNGTC	1 cut(s)	317
Psp5II	RGGWCCY	1 cut(s)	58
Psp6I	CCWGG	1 cut(s)	324
PspGI	CCWGG	1 cut(s)	324
PspN4I	GGNNCC	6 cut(s)	59, 60, 185, 238, 382, 459
PspOMI	GGGCCC	1 cut(s)	380
PspPI	GGNCC	7 cut(s)	58, 184, 328, 380, 381, 442, 484
PspPPI	RGGWCCY	1 cut(s)	58
RsaI	GTAC	3 cut(s)	53, 129, 476
RsaNI	GTAC	3 cut(s)	52, 128, 475
RseI	CAYNNNNRTG	1 cut(s)	305
SaqAI	TTAA	1 cut(s)	435
SatI	GCNGC	6 cut(s)	280, 283, 507, 531, 640, 690
Sau3AI	GATC	3 cut(s)	4, 27, 630
Sau96I	GGNCC	7 cut(s)	58, 184, 328, 380, 381, 442, 484
SchI	GAGTC	2 cut(s)	83, 406
ScrFI	CCNGG	3 cut(s)	326, 441, 576
SduI	GDGCHC	5 cut(s)	239, 293, 384, 462, 582
SetI	ASST	8 cut(s)	100, 169, 197, 209, 251, 321, 459, 476
SfaNI	GCATC	1 cut(s)	674
SfuI	TTCGAA	1 cut(s)	252
SinI	GGWCC	2 cut(s)	58, 184
SmiMI	CAYNNNNRTG	1 cut(s)	305
SsiI	CCGC	9 cut(s)	78, 267, 277, 282, 428, 507, 531, 642, 689
StyD4I	CCNGG	3 cut(s)	324, 439, 574
StyI	CCWWGG	1 cut(s)	462
TaaI	ACNGT	2 cut(s)	371, 566
TaiI	ACGT	2 cut(s)	169, 321
TaqI	TCGA	1 cut(s)	252
TauI	GCSGC	4 cut(s)	285, 509, 533, 692
Tru1I	TTAA	1 cut(s)	435
Tru9I	TTAA	1 cut(s)	435
TscAI	CASTG	1 cut(s)	54
TseFI	GTSAC	3 cut(s)	84, 298, 409
TseI	GCWGC	2 cut(s)	279, 639
Tsp45I	GTSAC	3 cut(s)	84, 298, 409
TspDTI	ATGAA	2 cut(s)	81, 612
TspGWI	ACGGA	5 cut(s)	365, 505, 506, 575, 606
TspRI	CASTG	1 cut(s)	54
VneI	GTGCAC	1 cut(s)	289
VpaK11BI	GGWCC	2 cut(s)	58, 184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.