Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014103

Physical Location & Seq

Genomic Coordinates Forward (+)

15875125 .. 15876116

Gene Structure 992 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G39650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGAGAAAACAGAGGAAAGCGTCGGAATCAGAGTTTACACGGCGACTCCGCCGCAAAAACCATCACCATCACCACCTTCTCGTTCACCAAAACCCGTCTTAATCTCTTCATTGCCTTCCCTCCCGTCAGGAGCCGCCGCTGGAGGAGGAAGAGGTCGAAAACGTCGCATGGTGGCGCAAGGAGTTCAAAAAACGGTTTCGAAGACATCAATGCTCGTCAACTTCCTTCCGACAGGAACACTCTTGATGTTCGAAATGGTTCTTCCATCAATATACCGTGACGGAGACTGTAACGGAATCAACACACTCATGATTCATCTCCTCTTGCTTCTTTGCGCAATGTCTTGTTTCTTCTTCCATTTTACCGACAGTTTCAAAGCATCCGATGGGAAGATCTACTACGGTTTCGTGACGCCACGTGGACTCGCGGTGTTCATGAAACCGCCGCCTCCAGAGTTTGGTGGCGGAGATGTTATAGCGGAGGCAGAGATTCCGGTGACTGATGATAGGTATAAGTTGACGGTTAATGACTTTGTTCATGCAGTGATGAGCGTTTTGGTGTTTATGGCGATTGCGTTTTCGGATCGAAGAGTCACGGGATGTTTGTTTCCAGGGAAAGAGAAAGAGATGGATCAAGTTATGGAGAGTTTTCCAATAATGGTTGGAATTGTTTGTAGTGCTTTGTTTCTTGTTTTTCCGACCACTCGATATGGTGTTGGTTGCATGACTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000325 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009705 GO:0009987 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0031090 GO:0032501 GO:0032502 GO:0032504 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0051704 GO:0055046 GO:0071840 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF679

Protein Analysis

244

Amino Acids

26.54

Weight (kDa)

8.73

Isoelectric Point (pI)

42.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF679	PF05078	68 - 241	2.2e-63	Protein of unknown function (DUF679)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09157 AT5G39650
fragaria_vesca	FvH4_6g48440
malus_domestica	MD00G1130800.v1.1 MD09G1051900.v1.1
prunus_persica	Prupe.3G266800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0168351
rosa_laevigata	RLG00000021769
rosa_multiflora	Rmu_sc0003354.1_g000017
rosa_roxburghii	Rroxscaffold_2G00083120
rosa_rugosa	Rorug02G0533100
rosa_samantha	Rh2AG602200 Rh2BG615500 Rh2CG583200 Rh2DG625700
rosa_wichuraiana	Rw0G019820 Rw2G049990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	337
AccB7I	CCANNNNNTGG	1 cut(s)	458
AccII	CGCG	1 cut(s)	428
AciI	CCGC	9 cut(s)	50, 53, 135, 138, 428, 443, 446, 465, 479
AclWI	GGATC	2 cut(s)	591, 639
AcvI	CACGTG	1 cut(s)	419
AcyI	GRCGYC	1 cut(s)	413
AfiI	CCNNNNNNNGG	1 cut(s)	458
AgsI	TTSAA	2 cut(s)	188, 376
AjnI	CCWGG	1 cut(s)	610
Alw26I	GTCTC	1 cut(s)	279
AlwI	GGATC	2 cut(s)	591, 639
Asp700I	GAANNNNTTC	1 cut(s)	258
AspLEI	GCGC	2 cut(s)	178, 338
AsuHPI	GGTGA	4 cut(s)	57, 63, 78, 508
AsuII	TTCGAA	2 cut(s)	200, 252
BarI	GAAGNNNNNNTAC	2 cut(s)	383, 415
BbrPI	CACGTG	1 cut(s)	419
BbsI	GAAGAC	1 cut(s)	209
BccI	CCATC	5 cut(s)	70, 76, 274, 380, 622
BceAI	ACGGC	1 cut(s)	57
BciT130I	CCWGG	1 cut(s)	612
BcoDI	GTCTC	1 cut(s)	279
BglII	AGATCT	1 cut(s)	393
BisI	GCNGC	4 cut(s)	53, 135, 138, 446
BlsI	GCNGC	4 cut(s)	54, 136, 139, 447
Bme1390I	CCNGG	1 cut(s)	612
BmiI	GGNNCC	1 cut(s)	133
BmrFI	CCNGG	1 cut(s)	612
BmsI	GCATC	1 cut(s)	389
BpiI	GAAGAC	1 cut(s)	209
BpmI	CTGGAG	2 cut(s)	162, 435
Bpu14I	TTCGAA	2 cut(s)	200, 252
BsaAI	YACGTR	1 cut(s)	419
BsaHI	GRCGYC	1 cut(s)	413
BsaJI	CCNNGG	1 cut(s)	611
BsaWI	WCCGGW	1 cut(s)	493
BsaXI	ACNNNNNCTCC	2 cut(s)	31, 61
Bsc4I	CCNNNNNNNGG	1 cut(s)	458
Bse1I	ACTGG	1 cut(s)	733
Bse3DI	GCAATG	2 cut(s)	110, 345
BseBI	CCWGG	1 cut(s)	612
BseDI	CCNNGG	1 cut(s)	611
BseGI	GGATG	2 cut(s)	380, 605
BseLI	CCNNNNNNNGG	1 cut(s)	458
BseMI	GCAATG	2 cut(s)	110, 345
BseNI	ACTGG	1 cut(s)	733
BseRI	GAGGAG	2 cut(s)	159, 311
Bsh1236I	CGCG	1 cut(s)	428
BsiSI	CCGG	1 cut(s)	494
BslI	CCNNNNNNNGG	1 cut(s)	458
BsmAI	GTCTC	1 cut(s)	279
Bsp119I	TTCGAA	2 cut(s)	200, 252
Bsp143I	GATC	3 cut(s)	393, 583, 631
BspACI	CCGC	9 cut(s)	50, 53, 135, 138, 428, 443, 446, 465, 479
BspFNI	CGCG	1 cut(s)	428
BspHI	TCATGA	2 cut(s)	309, 435
BspLI	GGNNCC	1 cut(s)	133
BspPI	GGATC	2 cut(s)	591, 639
BspT104I	TTCGAA	2 cut(s)	200, 252
BsrDI	GCAATG	2 cut(s)	110, 345
BsrI	ACTGG	1 cut(s)	733
BssECI	CCNNGG	1 cut(s)	611
BssMI	GATC	3 cut(s)	393, 583, 631
BssNI	GRCGYC	1 cut(s)	413
Bst2UI	CCWGG	1 cut(s)	612
Bst4CI	ACNGT	6 cut(s)	196, 278, 290, 371, 404, 523
Bst6I	CTCTTC	3 cut(s)	112, 145, 583
BstACI	GRCGYC	1 cut(s)	413
BstBAI	YACGTR	1 cut(s)	419
BstBI	TTCGAA	2 cut(s)	200, 252
BstF5I	GGATG	2 cut(s)	380, 605
BstFNI	CGCG	1 cut(s)	428
BstHHI	GCGC	2 cut(s)	178, 338
BstKTI	GATC	3 cut(s)	396, 586, 634
BstMAI	GTCTC	1 cut(s)	279
BstMBI	GATC	3 cut(s)	393, 583, 631
BstNI	CCWGG	1 cut(s)	612
BstSCI	CCNGG	1 cut(s)	610
BstUI	CGCG	1 cut(s)	428
BstV2I	GAAGAC	1 cut(s)	209
BstX2I	RGATCY	1 cut(s)	393
BstYI	RGATCY	1 cut(s)	393
BtsCI	GGATG	2 cut(s)	380, 605
BtsI	GCAGTG	1 cut(s)	549
BtsIMutI	CAGTG	1 cut(s)	549
CciI	TCATGA	2 cut(s)	309, 435
CfoI	GCGC	2 cut(s)	178, 338
CseI	GACGC	2 cut(s)	10, 421
CviAII	CATG	5 cut(s)	169, 310, 436, 539, 724
CviJI	RGCY	1 cut(s)	134
CviKI_1	RGCY	1 cut(s)	134
DpnI	GATC	3 cut(s)	395, 585, 633
DpnII	GATC	3 cut(s)	393, 583, 631
Eam1104I	CTCTTC	3 cut(s)	112, 145, 583
EarI	CTCTTC	3 cut(s)	112, 145, 583
EciI	GGCGGA	2 cut(s)	39, 480
Eco72I	CACGTG	1 cut(s)	419
EcoRII	CCWGG	1 cut(s)	610
FaeI	CATG	5 cut(s)	172, 313, 439, 542, 727
FatI	CATG	5 cut(s)	168, 309, 435, 538, 723
Fnu4HI	GCNGC	4 cut(s)	53, 135, 138, 446
FokI	GGATG	2 cut(s)	367, 612
Fsp4HI	GCNGC	4 cut(s)	53, 135, 138, 446
FspI	TGCGCA	1 cut(s)	337
GlaI	GCGC	2 cut(s)	177, 337
GluI	GCNGC	4 cut(s)	53, 135, 138, 446
GsuI	CTGGAG	2 cut(s)	162, 435
HapII	CCGG	1 cut(s)	494
HgaI	GACGC	2 cut(s)	10, 421
HhaI	GCGC	2 cut(s)	178, 338
Hin1I	GRCGYC	1 cut(s)	413
Hin1II	CATG	5 cut(s)	172, 313, 439, 542, 727
Hin6I	GCGC	2 cut(s)	176, 336
HinP1I	GCGC	2 cut(s)	176, 336
HincII	GTYRAC	2 cut(s)	220, 519
HindII	GTYRAC	2 cut(s)	220, 519
HinfI	GANTC	7 cut(s)	27, 46, 297, 313, 423, 490, 591
HpaII	CCGG	1 cut(s)	494
HphI	GGTGA	4 cut(s)	57, 63, 78, 508
Hpy166II	GTNNAC	5 cut(s)	37, 86, 220, 422, 519
Hpy188I	TCNGA	6 cut(s)	26, 32, 231, 385, 583, 699
Hpy188III	TCNNGA	6 cut(s)	129, 244, 310, 409, 436, 452
Hpy8I	GTNNAC	5 cut(s)	37, 86, 220, 422, 519
Hpy99I	CGWCG	2 cut(s)	26, 168
HpyAV	CCTTC	3 cut(s)	87, 126, 236
HpyCH4III	ACNGT	6 cut(s)	196, 278, 290, 371, 404, 523
HpyCH4IV	ACGT	2 cut(s)	163, 418
HpyCH4V	TGCA	2 cut(s)	542, 723
HpySE526I	ACGT	2 cut(s)	163, 418
Hsp92I	GRCGYC	1 cut(s)	413
Hsp92II	CATG	5 cut(s)	172, 313, 439, 542, 727
HspAI	GCGC	2 cut(s)	176, 336
Kzo9I	GATC	3 cut(s)	393, 583, 631
LmnI	GCTCC	1 cut(s)	131
LpnPI	CCDG	8 cut(s)	114, 126, 219, 465, 507, 597, 624, 714
LweI	GCATC	1 cut(s)	389
MaeII	ACGT	2 cut(s)	163, 418
MaeIII	GTNAC	5 cut(s)	278, 290, 409, 496, 592
MalI	GATC	3 cut(s)	395, 585, 633
MboI	GATC	3 cut(s)	393, 583, 631
MboII	GAAGA	8 cut(s)	99, 162, 214, 254, 343, 346, 403, 600
MflI	RGATCY	1 cut(s)	393
MluCI	AATT	1 cut(s)	666
MlyI	GAGTC	3 cut(s)	40, 417, 600
MmeI	TCCRAC	4 cut(s)	4, 254, 643, 722
MnlI	CCTC	8 cut(s)	7, 131, 137, 140, 146, 332, 459, 475
MroXI	GAANNNNTTC	1 cut(s)	258
MseI	TTAA	3 cut(s)	101, 525, 733
MslI	CAYNNNNRTG	1 cut(s)	308
MspA1I	CMGCKG	1 cut(s)	140
MspI	CCGG	1 cut(s)	494
MspR9I	CCNGG	1 cut(s)	612
MvaI	CCWGG	1 cut(s)	612
MvnI	CGCG	1 cut(s)	428
NdeII	GATC	3 cut(s)	393, 583, 631
NlaIII	CATG	5 cut(s)	172, 313, 439, 542, 727
NlaIV	GGNNCC	1 cut(s)	133
NmuCI	GTSAC	4 cut(s)	278, 409, 496, 592
NsbI	TGCGCA	1 cut(s)	337
NspV	TTCGAA	2 cut(s)	200, 252
PagI	TCATGA	2 cut(s)	309, 435
PdmI	GAANNNNTTC	1 cut(s)	258
PfeI	GAWTC	4 cut(s)	27, 297, 313, 490
PflMI	CCANNNNNTGG	1 cut(s)	458
PkrI	GCNGC	4 cut(s)	54, 136, 139, 447
PleI	GAGTC	3 cut(s)	40, 417, 599
PmaCI	CACGTG	1 cut(s)	419
PmlI	CACGTG	1 cut(s)	419
PpsI	GAGTC	3 cut(s)	40, 417, 599
Ppu21I	YACGTR	1 cut(s)	419
Psp6I	CCWGG	1 cut(s)	610
PspCI	CACGTG	1 cut(s)	419
PspGI	CCWGG	1 cut(s)	610
PspN4I	GGNNCC	1 cut(s)	133
PsuI	RGATCY	1 cut(s)	393
RseI	CAYNNNNRTG	1 cut(s)	308
SaqAI	TTAA	3 cut(s)	101, 525, 733
SatI	GCNGC	4 cut(s)	53, 135, 138, 446
Sau3AI	GATC	3 cut(s)	393, 583, 631
SchI	GAGTC	3 cut(s)	40, 417, 600
ScrFI	CCNGG	1 cut(s)	612
SetI	ASST	5 cut(s)	79, 157, 166, 421, 512
SfaNI	GCATC	1 cut(s)	389
SfuI	TTCGAA	2 cut(s)	200, 252
SmiMI	CAYNNNNRTG	1 cut(s)	308
Sse9I	AATT	1 cut(s)	666
SsiI	CCGC	9 cut(s)	50, 53, 135, 138, 428, 443, 446, 465, 479
StyD4I	CCNGG	1 cut(s)	610
TaaI	ACNGT	6 cut(s)	196, 278, 290, 371, 404, 523
TaiI	ACGT	2 cut(s)	166, 421
TaqI	TCGA	5 cut(s)	157, 200, 252, 586, 706
TasI	AATT	1 cut(s)	666
TauI	GCSGC	4 cut(s)	55, 137, 140, 448
TfiI	GAWTC	4 cut(s)	27, 297, 313, 490
Tru1I	TTAA	3 cut(s)	101, 525, 733
Tru9I	TTAA	3 cut(s)	101, 525, 733
TscAI	CASTG	1 cut(s)	549
TseFI	GTSAC	4 cut(s)	278, 409, 496, 592
Tsp45I	GTSAC	4 cut(s)	278, 409, 496, 592
TspDTI	ATGAA	5 cut(s)	99, 305, 424, 452, 527
TspGWI	ACGGA	2 cut(s)	297, 309
TspRI	CASTG	1 cut(s)	549
Van91I	CCANNNNNTGG	1 cut(s)	458
XmnI	GAANNNNTTC	1 cut(s)	258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.