Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0014103

Physical Location & Seq

Genomic Coordinates Forward (+)

3463787 .. 3464494

Gene Structure 708 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1051900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGACCAAAAAAGCGATGGAGTTGGAATCAAAATCTATAACAATGCAGTCTACGGGGACCCGCACGACGACGAGTCCGCCAAGTCACCACCAAAGCCGCCGCCAACTTCTTCTTCATCTCACCCTCTGCCTTTGCTCCGACTGAACCCGGACCACTTACACGGCCGCAAACGCCGTGCCGTTGCCAAAGGGGTCCAGAAAACCCTATCCAAGACCTCAATGCTGGCCAACTTTCTCCCCACAGGCACTCTCTTAACCTTTGAAATGGTGCTCCCCGCTATCTACAGAACCGGAGAGTGCACGGGCGTCACCACTATGATGACACTCGTGCTCCTTGGCATGTGCACCCTCTCATGCTTCTTCTTCCACTTCACGGACAGTTTCCGTGGGCCTGACGGGAAGTTGTACTACGGATTCGTGACGCCGAAAGGACTAGCGGTATTTAAACCGGGCCTGGGGGTGGAGGTGCCGAAGGAGGAGAGGTACAAATTGGGGCTGTCAGACTTCGTTCACGCCATTATGTCTGTCATGGTGTTTGTGGCGATCGCATTTTCGGACCGGCGCGTGACGGACTGTTTGTTTCCGGGGCACGAGAAGGATATGGATGAAGTTATGGAGAGTTTCCCGTTGATGGTGGGGATCGTGTGCAGTGGCTTGTTTCTTGTGTTTCCGAGTACTCGCTACGGGATTGGCTGCATGGCTGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000325 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009705 GO:0009987 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0031090 GO:0032501 GO:0032502 GO:0032504 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0051704 GO:0055046 GO:0071840 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF679

Protein Analysis

236

Amino Acids

25.78

Weight (kDa)

8.18

Isoelectric Point (pI)

31.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF679	PF05078	71 - 232	1.5e-64	Protein of unknown function (DUF679)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09157 AT5G39650
fragaria_vesca	FvH4_6g48440
malus_domestica	MD00G1130800.v1.1 MD09G1051900.v1.1
prunus_persica	Prupe.3G266800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0168351
rosa_laevigata	RLG00000021769
rosa_multiflora	Rmu_sc0003354.1_g000017
rosa_roxburghii	Rroxscaffold_2G00083120
rosa_rugosa	Rorug02G0533100
rosa_samantha	Rh2AG602200 Rh2BG615500 Rh2CG583200 Rh2DG625700
rosa_wichuraiana	Rw0G019820 Rw2G049990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	466
AccI	GTMKAC	1 cut(s)	51
AccII	CGCG	1 cut(s)	564
AciI	CCGC	7 cut(s)	62, 78, 98, 101, 166, 276, 437
AclWI	GGATC	1 cut(s)	647
AcoI	YGGCCR	2 cut(s)	163, 225
AcyI	GRCGYC	2 cut(s)	306, 422
AfaI	GTAC	3 cut(s)	407, 485, 676
AfiI	CCNNNNNNNGG	4 cut(s)	373, 455, 460, 631
AgsI	TTSAA	1 cut(s)	263
AhdI	GACNNNNNGTC	1 cut(s)	73
AjnI	CCWGG	1 cut(s)	453
AjuI	GAANNNNNNNTTGG	2 cut(s)	97, 129
Alw21I	GWGCWC	4 cut(s)	273, 302, 333, 347
Alw44I	GTGCAC	2 cut(s)	298, 343
AlwI	GGATC	1 cut(s)	647
AoxI	GGCC	4 cut(s)	163, 225, 389, 451
ApaLI	GTGCAC	2 cut(s)	298, 343
ApeKI	GCWGC	2 cut(s)	693, 701
ArsI	GACNNNNNNTTYG	2 cut(s)	559, 591
AsiSI	GCGATCGC	1 cut(s)	546
AspLEI	GCGC	1 cut(s)	564
AspS9I	GGNCC	7 cut(s)	4, 58, 151, 193, 389, 451, 556
AsuC2I	CCSGG	3 cut(s)	149, 450, 585
AsuHPI	GGTGA	3 cut(s)	78, 113, 301
AvaII	GGWCC	5 cut(s)	4, 58, 151, 193, 556
BaeGI	GKGCMC	3 cut(s)	302, 347, 591
BalI	TGGCCA	1 cut(s)	227
BanI	GGYRCC	1 cut(s)	466
BarI	GAAGNNNNNNTAC	2 cut(s)	392, 424
BauI	CACGAG	2 cut(s)	326, 590
Bbv12I	GWGCWC	4 cut(s)	273, 302, 333, 347
BbvI	GCAGC	2 cut(s)	680, 688
BccI	CCATC	2 cut(s)	11, 625
BceAI	ACGGC	3 cut(s)	159, 164, 178
BciT130I	CCWGG	1 cut(s)	455
BcnI	CCSGG	3 cut(s)	149, 450, 585
BfaI	CTAG	1 cut(s)	434
BfmI	CTRYAG	1 cut(s)	283
BisI	GCNGC	5 cut(s)	98, 101, 166, 694, 702
BlsI	GCNGC	5 cut(s)	99, 102, 167, 695, 703
BmcAI	AGTACT	1 cut(s)	676
Bme1390I	CCNGG	4 cut(s)	149, 450, 455, 585
Bme18I	GGWCC	5 cut(s)	4, 58, 151, 193, 556
BmeRI	GACNNNNNGTC	1 cut(s)	73
BmgT120I	GGNCC	7 cut(s)	4, 58, 151, 193, 389, 451, 556
BmiI	GGNNCC	4 cut(s)	59, 60, 194, 468
BmrFI	CCNGG	4 cut(s)	149, 450, 455, 585
BpuMI	CCSGG	3 cut(s)	149, 450, 585
BsaHI	GRCGYC	2 cut(s)	306, 422
BsaJI	CCNNGG	4 cut(s)	334, 385, 454, 584
BsaWI	WCCGGW	1 cut(s)	290
BsaXI	ACNNNNNCTCC	4 cut(s)	315, 345, 467, 497
Bsc4I	CCNNNNNNNGG	4 cut(s)	373, 455, 460, 631
Bse118I	RCCGGY	1 cut(s)	558
BseBI	CCWGG	1 cut(s)	455
BseDI	CCNNGG	4 cut(s)	334, 385, 454, 584
BseGI	GGATG	1 cut(s)	610
BseLI	CCNNNNNNNGG	4 cut(s)	373, 455, 460, 631
BseRI	GAGGAG	1 cut(s)	491
BseSI	GKGCMC	3 cut(s)	302, 347, 591
BseX3I	CGGCCG	1 cut(s)	163
BseXI	GCAGC	2 cut(s)	680, 688
BsgI	GTGCAG	1 cut(s)	667
Bsh1236I	CGCG	1 cut(s)	564
Bsh1285I	CGRYCG	2 cut(s)	166, 546
BshFI	GGCC	4 cut(s)	165, 227, 391, 453
BshNI	GGYRCC	1 cut(s)	466
BsiEI	CGRYCG	2 cut(s)	166, 546
BsiHKAI	GWGCWC	4 cut(s)	273, 302, 333, 347
BsiSI	CCGG	5 cut(s)	149, 291, 449, 559, 584
BslFI	GGGAC	1 cut(s)	71
BslI	CCNNNNNNNGG	4 cut(s)	373, 455, 460, 631
BsmFI	GGGAC	1 cut(s)	71
BsnI	GGCC	4 cut(s)	165, 227, 391, 453
Bsp1286I	GDGCHC	5 cut(s)	273, 302, 333, 347, 591
Bsp143I	GATC	2 cut(s)	543, 639
BspACI	CCGC	7 cut(s)	62, 78, 98, 101, 166, 276, 437
BspANI	GGCC	4 cut(s)	165, 227, 391, 453
BspFNI	CGCG	1 cut(s)	564
BspLI	GGNNCC	4 cut(s)	59, 60, 194, 468
BspPI	GGATC	1 cut(s)	647
BspT107I	GGYRCC	1 cut(s)	466
BsrFI	RCCGGY	1 cut(s)	558
BssAI	RCCGGY	1 cut(s)	558
BssECI	CCNNGG	4 cut(s)	334, 385, 454, 584
BssMI	GATC	2 cut(s)	543, 639
BssNI	GRCGYC	2 cut(s)	306, 422
BssSI	CACGAG	2 cut(s)	326, 590
BssT1I	CCWWGG	1 cut(s)	334
Bst2BI	CACGAG	2 cut(s)	326, 590
Bst2UI	CCWGG	1 cut(s)	455
Bst4CI	ACNGT	2 cut(s)	380, 575
BstACI	GRCGYC	2 cut(s)	306, 422
BstC8I	GCNNGC	1 cut(s)	225
BstDSI	CCRYGG	1 cut(s)	385
BstF5I	GGATG	1 cut(s)	610
BstFNI	CGCG	1 cut(s)	564
BstHHI	GCGC	1 cut(s)	564
BstKTI	GATC	2 cut(s)	546, 642
BstMBI	GATC	2 cut(s)	543, 639
BstMCI	CGRYCG	2 cut(s)	166, 546
BstMWI	GCNNNNNNNGC	1 cut(s)	171
BstNI	CCWGG	1 cut(s)	455
BstNSI	RCATGY	1 cut(s)	343
BstSCI	CCNGG	4 cut(s)	147, 448, 453, 583
BstSFI	CTRYAG	1 cut(s)	283
BstSLI	GKGCMC	3 cut(s)	302, 347, 591
BstUI	CGCG	1 cut(s)	564
BstV1I	GCAGC	2 cut(s)	680, 688
BstZI	CGGCCG	1 cut(s)	163
BsuRI	GGCC	4 cut(s)	165, 227, 391, 453
BtgI	CCRYGG	1 cut(s)	385
BtgZI	GCGATG	1 cut(s)	30
BtsCI	GGATG	1 cut(s)	610
BtsI	GCAGTG	1 cut(s)	655
BtsIMutI	CAGTG	1 cut(s)	655
Cac8I	GCNNGC	1 cut(s)	225
CfoI	GCGC	1 cut(s)	564
Cfr10I	RCCGGY	1 cut(s)	558
Cfr13I	GGNCC	7 cut(s)	4, 58, 151, 193, 389, 451, 556
CpoI	CGGWCCG	1 cut(s)	556
CseI	GACGC	2 cut(s)	295, 430
Csp6I	GTAC	3 cut(s)	406, 484, 675
CspI	CGGWCCG	1 cut(s)	556
CviAII	CATG	4 cut(s)	340, 354, 529, 697
CviJI	RGCY	9 cut(s)	97, 165, 227, 391, 453, 496, 654, 693, 701
CviKI_1	RGCY	9 cut(s)	97, 165, 227, 391, 453, 496, 654, 693, 701
CviQI	GTAC	3 cut(s)	406, 484, 675
DpnI	GATC	2 cut(s)	545, 641
DpnII	GATC	2 cut(s)	543, 639
DraI	TTTAAA	1 cut(s)	445
DriI	GACNNNNNGTC	1 cut(s)	73
EaeI	YGGCCR	2 cut(s)	163, 225
EagI	CGGCCG	1 cut(s)	163
Eam1105I	GACNNNNNGTC	1 cut(s)	73
EciI	GGCGGA	1 cut(s)	67
EclXI	CGGCCG	1 cut(s)	163
Eco130I	CCWWGG	1 cut(s)	334
Eco47I	GGWCC	5 cut(s)	4, 58, 151, 193, 556
Eco52I	CGGCCG	1 cut(s)	163
EcoO109I	RGGNCCY	1 cut(s)	58
EcoRII	CCWGG	1 cut(s)	453
EcoT14I	CCWWGG	1 cut(s)	334
ErhI	CCWWGG	1 cut(s)	334
FaeI	CATG	4 cut(s)	343, 357, 532, 700
FaiI	YATR	9 cut(s)	39, 317, 341, 355, 521, 530, 602, 614, 698
FaqI	GGGAC	1 cut(s)	71
FatI	CATG	4 cut(s)	339, 353, 528, 696
FauI	CCCGC	2 cut(s)	69, 283
FblI	GTMKAC	1 cut(s)	51
Fnu4HI	GCNGC	5 cut(s)	98, 101, 166, 694, 702
FokI	GGATG	1 cut(s)	617
Fsp4HI	GCNGC	5 cut(s)	98, 101, 166, 694, 702
FspBI	CTAG	1 cut(s)	434
GlaI	GCGC	1 cut(s)	563
GluI	GCNGC	5 cut(s)	98, 101, 166, 694, 702
HaeIII	GGCC	4 cut(s)	165, 227, 391, 453
HapII	CCGG	5 cut(s)	149, 291, 449, 559, 584
HgaI	GACGC	2 cut(s)	295, 430
HhaI	GCGC	1 cut(s)	564
Hin1I	GRCGYC	2 cut(s)	306, 422
Hin1II	CATG	4 cut(s)	343, 357, 532, 700
Hin6I	GCGC	1 cut(s)	562
HinP1I	GCGC	1 cut(s)	562
HinfI	GANTC	3 cut(s)	27, 74, 414
HpaII	CCGG	5 cut(s)	149, 291, 449, 559, 584
HphI	GGTGA	3 cut(s)	78, 113, 301
Hpy166II	GTNNAC	4 cut(s)	52, 300, 345, 511
Hpy188I	TCNGA	4 cut(s)	140, 502, 556, 672
Hpy188III	TCNNGA	2 cut(s)	196, 418
Hpy8I	GTNNAC	4 cut(s)	52, 300, 345, 511
Hpy99I	CGWCG	2 cut(s)	71, 74
HpyAV	CCTTC	2 cut(s)	466, 589
HpyCH4III	ACNGT	2 cut(s)	380, 575
HpyCH4V	TGCA	5 cut(s)	47, 300, 345, 648, 696
HpyF10VI	GCNNNNNNNGC	1 cut(s)	171
Hsp92I	GRCGYC	2 cut(s)	306, 422
Hsp92II	CATG	4 cut(s)	343, 357, 532, 700
HspAI	GCGC	1 cut(s)	562
KflI	GGGWCCC	1 cut(s)	58
Kzo9I	GATC	2 cut(s)	543, 639
LmnI	GCTCC	3 cut(s)	141, 276, 336
Lsp1109I	GCAGC	2 cut(s)	680, 688
MaeI	CTAG	1 cut(s)	434
MaeIII	GTNAC	4 cut(s)	84, 307, 418, 565
MalI	GATC	2 cut(s)	545, 641
MboI	GATC	2 cut(s)	543, 639
MboII	GAAGA	4 cut(s)	102, 105, 352, 355
MhlI	GDGCHC	5 cut(s)	273, 302, 333, 347, 591
MlsI	TGGCCA	1 cut(s)	227
MluCI	AATT	1 cut(s)	488
MluNI	TGGCCA	1 cut(s)	227
MlyI	GAGTC	1 cut(s)	83
MmeI	TCCRAC	2 cut(s)	4, 163
MnlI	CCTC	6 cut(s)	135, 226, 359, 457, 469, 474
Mox20I	TGGCCA	1 cut(s)	227
MscI	TGGCCA	1 cut(s)	227
MseI	TTAA	2 cut(s)	254, 444
MslI	CAYNNNNRTG	2 cut(s)	314, 317
Msp20I	TGGCCA	1 cut(s)	227
MspI	CCGG	5 cut(s)	149, 291, 449, 559, 584
MspR9I	CCNGG	4 cut(s)	149, 450, 455, 585
MvaI	CCWGG	1 cut(s)	455
MvnI	CGCG	1 cut(s)	564
MwoI	GCNNNNNNNGC	1 cut(s)	171
NciI	CCSGG	3 cut(s)	149, 450, 585
NdeII	GATC	2 cut(s)	543, 639
NlaIII	CATG	4 cut(s)	343, 357, 532, 700
NlaIV	GGNNCC	4 cut(s)	59, 60, 194, 468
NmuCI	GTSAC	4 cut(s)	84, 307, 418, 565
NspI	RCATGY	1 cut(s)	343
PfeI	GAWTC	2 cut(s)	27, 414
PkrI	GCNGC	5 cut(s)	99, 102, 167, 695, 703
Ple19I	CGATCG	1 cut(s)	546
PleI	GAGTC	1 cut(s)	82
PpsI	GAGTC	1 cut(s)	82
PpuMI	RGGWCCY	1 cut(s)	58
Psp5II	RGGWCCY	1 cut(s)	58
Psp6I	CCWGG	1 cut(s)	453
PspGI	CCWGG	1 cut(s)	453
PspN4I	GGNNCC	4 cut(s)	59, 60, 194, 468
PspPI	GGNCC	7 cut(s)	4, 58, 151, 193, 389, 451, 556
PspPPI	RGGWCCY	1 cut(s)	58
PvuI	CGATCG	1 cut(s)	546
RgaI	GCGATCGC	1 cut(s)	546
RsaI	GTAC	3 cut(s)	407, 485, 676
RsaNI	GTAC	3 cut(s)	406, 484, 675
RseI	CAYNNNNRTG	2 cut(s)	314, 317
Rsr2I	CGGWCCG	1 cut(s)	556
RsrII	CGGWCCG	1 cut(s)	556
SaqAI	TTAA	2 cut(s)	254, 444
SatI	GCNGC	5 cut(s)	98, 101, 166, 694, 702
Sau3AI	GATC	2 cut(s)	543, 639
Sau96I	GGNCC	7 cut(s)	4, 58, 151, 193, 389, 451, 556
ScaI	AGTACT	1 cut(s)	676
SchI	GAGTC	1 cut(s)	83
ScrFI	CCNGG	4 cut(s)	149, 450, 455, 585
SduI	GDGCHC	5 cut(s)	273, 302, 333, 347, 591
SetI	ASST	4 cut(s)	218, 260, 468, 485
SfaAI	GCGATCGC	1 cut(s)	546
SfcI	CTRYAG	1 cut(s)	283
SgfI	GCGATCGC	1 cut(s)	546
SinI	GGWCC	5 cut(s)	4, 58, 151, 193, 556
SmiMI	CAYNNNNRTG	2 cut(s)	314, 317
Sse9I	AATT	1 cut(s)	488
SsiI	CCGC	7 cut(s)	62, 78, 98, 101, 166, 276, 437
SspMI	CTAG	1 cut(s)	434
StyD4I	CCNGG	4 cut(s)	147, 448, 453, 583
StyI	CCWWGG	1 cut(s)	334
TaaI	ACNGT	2 cut(s)	380, 575
TasI	AATT	1 cut(s)	488
TatI	WGTACW	2 cut(s)	405, 674
TauI	GCSGC	3 cut(s)	100, 103, 168
TfiI	GAWTC	2 cut(s)	27, 414
Tru1I	TTAA	2 cut(s)	254, 444
Tru9I	TTAA	2 cut(s)	254, 444
TscAI	CASTG	1 cut(s)	655
TseFI	GTSAC	4 cut(s)	84, 307, 418, 565
TseI	GCWGC	2 cut(s)	693, 701
Tsp45I	GTSAC	4 cut(s)	84, 307, 418, 565
TspDTI	ATGAA	2 cut(s)	105, 621
TspGWI	ACGGA	4 cut(s)	374, 389, 426, 584
TspRI	CASTG	1 cut(s)	655
VneI	GTGCAC	2 cut(s)	298, 343
VpaK11BI	GGWCC	5 cut(s)	4, 58, 151, 193, 556
XceI	RCATGY	1 cut(s)	343
XcmI	CCANNNNNNNNNTGG	1 cut(s)	14
XmiI	GTMKAC	1 cut(s)	51
XspI	CTAG	1 cut(s)	434
ZrmI	AGTACT	1 cut(s)	676

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.