Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0014103

Physical Location & Seq

Genomic Coordinates Reverse (-)

36455539 .. 36456628

Gene Structure 1090 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g48440.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGACCAACCGCAAGACTCCGGGATCAAGATCTACAACAACGCCGTGTACGGCGACCCTCCGGACCCCGAGGACCACCCTAAACCCAACTCTGCAGCCTCCTCCTCCTGCATGGGATCCTCCAACCCTAAACCACCTTCTTCATCCCTCCCTCTCGTCCGCCTCAACCACGACCAAATCCACGGCCGCAAACGACGCGCCGTCGCCAAAGGAGTCCAGAAAACCATTTCGAAAACCTCCATGCTCGTCAACTTCCTCCCCACCGGAACCCTGCTCACTTTCGAGATGGTCCTCCCCGCCATCTACCGCAACGGAGAGTGCACCACTGTCACTACCTTAATGACTCACGTCCTCCTAGGGATCTGCGCCCTCTCCTGCTTCTTCTTCCACTTCACCGACAGCTTCAAAGGCCCTGATGACAAGGTGTACTACGGCTTCGTGACGCCGAGAGGGCTGGCGGTTTTCAAGCCGGGGCTGACGGTGGAGGTGCCTAAGGATGAGAGGTATAGGGTAGGGCTGACGGACTTTGTTCATGCTATAATGTCAGTGATGGTGTTCATGGCGATTGCGTTTTCGGATCGGCGCGTGACGGAGTGTATGTTTCCCGGGCATGAGAAGGAGATGGATGAAGTGATGGAGAGTTTCCCGTTGATGGTGGGAATTGTTTGCAGTGGCTTGTTTCTTGTGTTTCCGACTTCCCGCCATGGGATTGGCTGCATGTCTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000325 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009705 GO:0009987 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0031090 GO:0032501 GO:0032502 GO:0032504 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0051704 GO:0055046 GO:0071840 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF679

Protein Analysis

243

Amino Acids

26.66

Weight (kDa)

7.07

Isoelectric Point (pI)

38.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF679	PF05078	78 - 239	4.7e-66	Protein of unknown function (DUF679)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09157 AT5G39650
fragaria_vesca	FvH4_6g48440
malus_domestica	MD00G1130800.v1.1 MD09G1051900.v1.1
prunus_persica	Prupe.3G266800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0168351
rosa_laevigata	RLG00000021769
rosa_multiflora	Rmu_sc0003354.1_g000017
rosa_roxburghii	Rroxscaffold_2G00083120
rosa_rugosa	Rorug02G0533100
rosa_samantha	Rh2AG602200 Rh2BG615500 Rh2CG583200 Rh2DG625700
rosa_wichuraiana	Rw0G019820 Rw2G049990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	487
AccII	CGCG	2 cut(s)	198, 585
AccIII	TCCGGA	1 cut(s)	61
AciI	CCGC	7 cut(s)	11, 160, 187, 297, 307, 458, 700
AclWI	GGATC	5 cut(s)	32, 111, 124, 368, 585
AcoI	YGGCCR	1 cut(s)	184
AcyI	GRCGYC	1 cut(s)	443
AfaI	GTAC	2 cut(s)	50, 428
AfiI	CCNNNNNNNGG	2 cut(s)	652, 705
AgsI	TTSAA	2 cut(s)	406, 466
AhdI	GACNNNNNGTC	1 cut(s)	200
AjiI	CACGTC	1 cut(s)	349
AluBI	AGCT	1 cut(s)	402
AluI	AGCT	1 cut(s)	402
Alw21I	GWGCWC	1 cut(s)	323
Alw44I	GTGCAC	1 cut(s)	319
AlwI	GGATC	5 cut(s)	32, 111, 124, 368, 585
Ama87I	CYCGRG	2 cut(s)	68, 605
Aor13HI	TCCGGA	1 cut(s)	61
AoxI	GGCC	2 cut(s)	184, 409
ApaLI	GTGCAC	1 cut(s)	319
ApeKI	GCWGC	2 cut(s)	95, 714
AspA2I	CCTAGG	1 cut(s)	355
AspLEI	GCGC	3 cut(s)	200, 368, 585
AspS9I	GGNCC	5 cut(s)	4, 64, 73, 289, 410
AsuC2I	CCSGG	4 cut(s)	22, 471, 606, 607
AsuHPI	GGTGA	1 cut(s)	385
AsuII	TTCGAA	1 cut(s)	230
AvaI	CYCGRG	2 cut(s)	68, 605
AvaII	GGWCC	4 cut(s)	4, 64, 73, 289
AvrII	CCTAGG	1 cut(s)	355
AxyI	CCTNAGG	1 cut(s)	492
BaeGI	GKGCMC	1 cut(s)	323
BamHI	GGATCC	1 cut(s)	116
BanI	GGYRCC	1 cut(s)	487
BarI	GAAGNNNNNNTAC	2 cut(s)	419, 451
Bbv12I	GWGCWC	1 cut(s)	323
BbvI	GCAGC	2 cut(s)	107, 701
BccI	CCATC	6 cut(s)	280, 308, 544, 616, 628, 646
BceAI	ACGGC	5 cut(s)	29, 67, 185, 199, 448
BcnI	CCSGG	4 cut(s)	22, 471, 606, 607
BfaI	CTAG	1 cut(s)	356
BfmI	CTRYAG	1 cut(s)	93
BglI	GCCNNNNNGGC	1 cut(s)	451
BglII	AGATCT	1 cut(s)	30
BisI	GCNGC	3 cut(s)	96, 187, 715
BlnI	CCTAGG	1 cut(s)	355
BlsI	GCNGC	3 cut(s)	97, 188, 716
Bme1390I	CCNGG	4 cut(s)	22, 471, 606, 607
Bme18I	GGWCC	4 cut(s)	4, 64, 73, 289
BmeRI	GACNNNNNGTC	1 cut(s)	200
BmeT110I	CYCGRG	2 cut(s)	68, 605
BmgBI	CACGTC	1 cut(s)	349
BmgT120I	GGNCC	5 cut(s)	4, 64, 73, 289, 410
BmiI	GGNNCC	4 cut(s)	66, 118, 268, 489
BmrFI	CCNGG	4 cut(s)	22, 471, 606, 607
BoxI	GACNNNNGTC	1 cut(s)	347
Bpu14I	TTCGAA	1 cut(s)	230
BpuMI	CCSGG	4 cut(s)	22, 471, 606, 607
BsaBI	GATNNNNATC	1 cut(s)	29
BsaHI	GRCGYC	1 cut(s)	443
BsaJI	CCNNGG	6 cut(s)	69, 181, 355, 470, 605, 703
BsaWI	WCCGGW	2 cut(s)	61, 263
BsaXI	ACNNNNNCTCC	2 cut(s)	584, 614
Bsc4I	CCNNNNNNNGG	2 cut(s)	652, 705
Bse21I	CCTNAGG	1 cut(s)	492
Bse8I	GATNNNNATC	1 cut(s)	29
BseAI	TCCGGA	1 cut(s)	61
BseDI	CCNNGG	6 cut(s)	69, 181, 355, 470, 605, 703
BseGI	GGATG	3 cut(s)	143, 502, 631
BseJI	GATNNNNATC	1 cut(s)	29
BseLI	CCNNNNNNNGG	2 cut(s)	652, 705
BseRI	GAGGAG	2 cut(s)	91, 94
BseSI	GKGCMC	1 cut(s)	323
BseX3I	CGGCCG	1 cut(s)	184
BseXI	GCAGC	2 cut(s)	107, 701
Bsh1236I	CGCG	2 cut(s)	198, 585
Bsh1285I	CGRYCG	1 cut(s)	187
BshFI	GGCC	2 cut(s)	186, 411
BshNI	GGYRCC	1 cut(s)	487
BsiEI	CGRYCG	1 cut(s)	187
BsiHKAI	GWGCWC	1 cut(s)	323
BsiHKCI	CYCGRG	2 cut(s)	68, 605
BsiSI	CCGG	5 cut(s)	21, 62, 264, 470, 606
BslI	CCNNNNNNNGG	2 cut(s)	652, 705
BsnI	GGCC	2 cut(s)	186, 411
BsoBI	CYCGRG	2 cut(s)	68, 605
Bsp119I	TTCGAA	1 cut(s)	230
Bsp1286I	GDGCHC	1 cut(s)	323
Bsp13I	TCCGGA	1 cut(s)	61
Bsp143I	GATC	5 cut(s)	24, 30, 116, 360, 577
Bsp19I	CCATGG	1 cut(s)	703
BspACI	CCGC	7 cut(s)	11, 160, 187, 297, 307, 458, 700
BspANI	GGCC	2 cut(s)	186, 411
BspEI	TCCGGA	1 cut(s)	61
BspFNI	CGCG	2 cut(s)	198, 585
BspLI	GGNNCC	4 cut(s)	66, 118, 268, 489
BspMAI	CTGCAG	1 cut(s)	97
BspPI	GGATC	5 cut(s)	32, 111, 124, 368, 585
BspT104I	TTCGAA	1 cut(s)	230
BspT107I	GGYRCC	1 cut(s)	487
BssECI	CCNNGG	6 cut(s)	69, 181, 355, 470, 605, 703
BssMI	GATC	5 cut(s)	24, 30, 116, 360, 577
BssNI	GRCGYC	1 cut(s)	443
BssT1I	CCWWGG	2 cut(s)	355, 703
Bst4CI	ACNGT	2 cut(s)	328, 481
BstACI	GRCGYC	1 cut(s)	443
BstBI	TTCGAA	1 cut(s)	230
BstC8I	GCNNGC	1 cut(s)	456
BstDEI	CTNAG	1 cut(s)	492
BstDSI	CCRYGG	2 cut(s)	181, 703
BstF5I	GGATG	3 cut(s)	143, 502, 631
BstFNI	CGCG	2 cut(s)	198, 585
BstHHI	GCGC	3 cut(s)	200, 368, 585
BstKTI	GATC	5 cut(s)	27, 33, 119, 363, 580
BstMBI	GATC	5 cut(s)	24, 30, 116, 360, 577
BstMCI	CGRYCG	1 cut(s)	187
BstMWI	GCNNNNNNNGC	3 cut(s)	195, 408, 451
BstNSI	RCATGY	1 cut(s)	721
BstPAI	GACNNNNGTC	1 cut(s)	347
BstSCI	CCNGG	4 cut(s)	20, 469, 604, 605
BstSFI	CTRYAG	1 cut(s)	93
BstSLI	GKGCMC	1 cut(s)	323
BstUI	CGCG	2 cut(s)	198, 585
BstV1I	GCAGC	2 cut(s)	107, 701
BstX2I	RGATCY	3 cut(s)	30, 116, 360
BstXI	CCANNNNNNTGG	1 cut(s)	710
BstYI	RGATCY	3 cut(s)	30, 116, 360
BstZI	CGGCCG	1 cut(s)	184
Bsu36I	CCTNAGG	1 cut(s)	492
BsuRI	GGCC	2 cut(s)	186, 411
BtgI	CCRYGG	2 cut(s)	181, 703
BtrI	CACGTC	1 cut(s)	349
BtsCI	GGATG	3 cut(s)	143, 502, 631
BtsI	GCAGTG	1 cut(s)	676
BtsIMutI	CAGTG	3 cut(s)	324, 552, 676
Cac8I	GCNNGC	1 cut(s)	456
CfoI	GCGC	3 cut(s)	200, 368, 585
Cfr13I	GGNCC	5 cut(s)	4, 64, 73, 289, 410
Cfr9I	CCCGGG	1 cut(s)	605
CseI	GACGC	2 cut(s)	204, 451
Csp6I	GTAC	2 cut(s)	49, 427
CviAII	CATG	8 cut(s)	112, 241, 533, 559, 611, 704, 718, 726
CviQI	GTAC	2 cut(s)	49, 427
DdeI	CTNAG	1 cut(s)	492
DpnI	GATC	5 cut(s)	26, 32, 118, 362, 579
DpnII	GATC	5 cut(s)	24, 30, 116, 360, 577
DriI	GACNNNNNGTC	1 cut(s)	200
EaeI	YGGCCR	1 cut(s)	184
EagI	CGGCCG	1 cut(s)	184
Eam1105I	GACNNNNNGTC	1 cut(s)	200
EciI	GGCGGA	1 cut(s)	149
EclXI	CGGCCG	1 cut(s)	184
Eco130I	CCWWGG	2 cut(s)	355, 703
Eco47I	GGWCC	4 cut(s)	4, 64, 73, 289
Eco52I	CGGCCG	1 cut(s)	184
Eco81I	CCTNAGG	1 cut(s)	492
Eco88I	CYCGRG	2 cut(s)	68, 605
EcoO109I	RGGNCCY	1 cut(s)	410
EcoT14I	CCWWGG	2 cut(s)	355, 703
ErhI	CCWWGG	2 cut(s)	355, 703
FaeI	CATG	8 cut(s)	115, 244, 536, 562, 614, 707, 721, 729
FatI	CATG	8 cut(s)	111, 240, 532, 558, 610, 703, 717, 725
FauI	CCCGC	2 cut(s)	304, 707
Fnu4HI	GCNGC	3 cut(s)	96, 187, 715
FokI	GGATG	3 cut(s)	130, 509, 638
Fsp4HI	GCNGC	3 cut(s)	96, 187, 715
FspBI	CTAG	1 cut(s)	356
GlaI	GCGC	3 cut(s)	199, 367, 584
GluI	GCNGC	3 cut(s)	96, 187, 715
HaeIII	GGCC	2 cut(s)	186, 411
HapII	CCGG	5 cut(s)	21, 62, 264, 470, 606
HgaI	GACGC	2 cut(s)	204, 451
HhaI	GCGC	3 cut(s)	200, 368, 585
Hin1I	GRCGYC	1 cut(s)	443
Hin1II	CATG	8 cut(s)	115, 244, 536, 562, 614, 707, 721, 729
Hin6I	GCGC	3 cut(s)	198, 366, 583
HinP1I	GCGC	3 cut(s)	198, 366, 583
HincII	GTYRAC	1 cut(s)	250
HindII	GTYRAC	1 cut(s)	250
HinfI	GANTC	3 cut(s)	17, 213, 343
HpaII	CCGG	5 cut(s)	21, 62, 264, 470, 606
HphI	GGTGA	1 cut(s)	385
Hpy166II	GTNNAC	4 cut(s)	49, 250, 321, 427
Hpy188I	TCNGA	2 cut(s)	577, 693
Hpy188III	TCNNGA	5 cut(s)	28, 62, 217, 283, 439
Hpy8I	GTNNAC	4 cut(s)	49, 250, 321, 427
Hpy99I	CGWCG	2 cut(s)	198, 206
HpyAV	CCTTC	2 cut(s)	147, 610
HpyCH4III	ACNGT	2 cut(s)	328, 481
HpyCH4IV	ACGT	1 cut(s)	348
HpyCH4V	TGCA	6 cut(s)	95, 111, 321, 669, 717, 725
HpyF10VI	GCNNNNNNNGC	3 cut(s)	195, 408, 451
HpyF3I	CTNAG	1 cut(s)	492
HpySE526I	ACGT	1 cut(s)	348
Hsp92I	GRCGYC	1 cut(s)	443
Hsp92II	CATG	8 cut(s)	115, 244, 536, 562, 614, 707, 721, 729
HspAI	GCGC	3 cut(s)	198, 366, 583
Kpn2I	TCCGGA	1 cut(s)	61
Kzo9I	GATC	5 cut(s)	24, 30, 116, 360, 577
Lsp1109I	GCAGC	2 cut(s)	107, 701
MaeI	CTAG	1 cut(s)	356
MaeII	ACGT	1 cut(s)	348
MaeIII	GTNAC	3 cut(s)	328, 439, 586
MalI	GATC	5 cut(s)	26, 32, 118, 362, 579
MboI	GATC	5 cut(s)	24, 30, 116, 360, 577
MboII	GAAGA	3 cut(s)	132, 373, 376
MflI	RGATCY	3 cut(s)	30, 116, 360
MhlI	GDGCHC	1 cut(s)	323
MluCI	AATT	1 cut(s)	660
MlyI	GAGTC	3 cut(s)	11, 222, 337
MmeI	TCCRAC	2 cut(s)	147, 716
MroI	TCCGGA	1 cut(s)	61
MseI	TTAA	1 cut(s)	338
MspI	CCGG	5 cut(s)	21, 62, 264, 470, 606
MspR9I	CCNGG	4 cut(s)	22, 471, 606, 607
MvnI	CGCG	2 cut(s)	198, 585
MwoI	GCNNNNNNNGC	3 cut(s)	195, 408, 451
NciI	CCSGG	4 cut(s)	22, 471, 606, 607
NcoI	CCATGG	1 cut(s)	703
NdeII	GATC	5 cut(s)	24, 30, 116, 360, 577
NlaIII	CATG	8 cut(s)	115, 244, 536, 562, 614, 707, 721, 729
NlaIV	GGNNCC	4 cut(s)	66, 118, 268, 489
NmeAIII	GCCGAG	1 cut(s)	471
NmuCI	GTSAC	3 cut(s)	328, 439, 586
NspI	RCATGY	1 cut(s)	721
NspV	TTCGAA	1 cut(s)	230
PfoI	TCCNGGA	1 cut(s)	20
PkrI	GCNGC	3 cut(s)	97, 188, 716
PleI	GAGTC	3 cut(s)	11, 221, 337
PpsI	GAGTC	3 cut(s)	11, 221, 337
PshAI	GACNNNNGTC	1 cut(s)	347
PspN4I	GGNNCC	4 cut(s)	66, 118, 268, 489
PspPI	GGNCC	5 cut(s)	4, 64, 73, 289, 410
PstI	CTGCAG	1 cut(s)	97
PsuI	RGATCY	3 cut(s)	30, 116, 360
RsaI	GTAC	2 cut(s)	50, 428
RsaNI	GTAC	2 cut(s)	49, 427
SaqAI	TTAA	1 cut(s)	338
SatI	GCNGC	3 cut(s)	96, 187, 715
Sau3AI	GATC	5 cut(s)	24, 30, 116, 360, 577
Sau96I	GGNCC	5 cut(s)	4, 64, 73, 289, 410
SchI	GAGTC	3 cut(s)	11, 222, 337
ScrFI	CCNGG	4 cut(s)	22, 471, 606, 607
SduI	GDGCHC	1 cut(s)	323
SetI	ASST	8 cut(s)	139, 239, 338, 351, 404, 426, 489, 506
SfcI	CTRYAG	1 cut(s)	93
SfuI	TTCGAA	1 cut(s)	230
SinI	GGWCC	4 cut(s)	4, 64, 73, 289
SmaI	CCCGGG	1 cut(s)	607
Sse9I	AATT	1 cut(s)	660
SsiI	CCGC	7 cut(s)	11, 160, 187, 297, 307, 458, 700
SspMI	CTAG	1 cut(s)	356
StyD4I	CCNGG	4 cut(s)	20, 469, 604, 605
StyI	CCWWGG	2 cut(s)	355, 703
TaaI	ACNGT	2 cut(s)	328, 481
TaiI	ACGT	1 cut(s)	351
TaqI	TCGA	2 cut(s)	230, 282
TasI	AATT	1 cut(s)	660
TatI	WGTACW	1 cut(s)	426
TauI	GCSGC	1 cut(s)	189
Tru1I	TTAA	1 cut(s)	338
Tru9I	TTAA	1 cut(s)	338
TscAI	CASTG	3 cut(s)	331, 552, 676
TseFI	GTSAC	3 cut(s)	328, 439, 586
TseI	GCWGC	2 cut(s)	95, 714
Tsp45I	GTSAC	3 cut(s)	328, 439, 586
TspDTI	ATGAA	4 cut(s)	132, 521, 547, 642
TspGWI	ACGGA	3 cut(s)	327, 536, 605
TspMI	CCCGGG	1 cut(s)	605
TspRI	CASTG	3 cut(s)	331, 552, 676
VneI	GTGCAC	1 cut(s)	319
VpaK11BI	GGWCC	4 cut(s)	4, 64, 73, 289
XceI	RCATGY	1 cut(s)	721
XmaI	CCCGGG	1 cut(s)	605
XmaJI	CCTAGG	1 cut(s)	355
XspI	CTAG	1 cut(s)	356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.