Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00891

Orthogroup ID

OG0014103

Physical Location & Seq

Genomic Coordinates Forward (+)

21687 .. 22421

Gene Structure 735 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G019820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGATCCGGATCAACCCCAAGACTCTGGAATCAAAATCTACAACAACGCCGTGTACGGCGACCCACCCGACCCCGAGGACCAGGCCAAGCCCAAGTCCGCCTCCTCCTCCTCCTGCATTGGCTCCAACCCCAGTAGGCCACCTTCTTCATCTCTCCCTCTCGTCCGCCTCAACCACAACCAACTCCACGGCCGCAAACGACGTGCCGTCGCCAAAGGCGTCCAGAAAACCATCTCCAAAACCTCTATGCTCGTCAACTTCCTCCCCACCGGAACCCTCCTCACTTTCGAGATGGTCCTCCCCGCCATCTACCGCAACGGCGAATGCACCGCCGTCACTACCACCATGACTCACGTCCTCCTAGGGATCTGCTCCCTCTCCTGCTTCTTCTTCCACTTCACCGACAGTTTTAAAGGCGCCGATGGGAAGATGTACTACGGCTTCGTGACGCCGAAGGGGTTGGCGGTTTTCAAGCCGGGGCTGACGGTGGACGTGCCTAAGGATGAGAGGTATAGGGTGGGGCTGACGGACTTTGTTCATGCCATAATGTCAGTGATGGTGTTCACGGCGATTGCGTTTTCGGATCGGCGTGTGACGGACTGTATGTTTCCCGGGCACGAGAAGGAGATGGATGAGGTAATGGAGAGTTTCCCGCTGATGGTGGGTATTGTTTGCAGTGGTTTGTTTCTTGTGTTTCCGAATTCTCGCCATGGGATTGGCTGCATGGCCGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000325 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009705 GO:0009987 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0031090 GO:0032501 GO:0032502 GO:0032504 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0051704 GO:0055046 GO:0071840 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF679

Protein Analysis

244

Amino Acids

26.71

Weight (kDa)

8.14

Isoelectric Point (pI)

37.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF679	PF05078	80 - 241	2.9e-65	Protein of unknown function (DUF679)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09157 AT5G39650
fragaria_vesca	FvH4_6g48440
malus_domestica	MD00G1130800.v1.1 MD09G1051900.v1.1
prunus_persica	Prupe.3G266800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0168351
rosa_laevigata	RLG00000021769
rosa_multiflora	Rmu_sc0003354.1_g000017
rosa_roxburghii	Rroxscaffold_2G00083120
rosa_rugosa	Rorug02G0533100
rosa_samantha	Rh2AG602200 Rh2BG615500 Rh2CG583200 Rh2DG625700
rosa_wichuraiana	Rw0G019820 Rw2G049990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	416
AccIII	TCCGGA	1 cut(s)	7
AciI	CCGC	9 cut(s)	99, 166, 193, 303, 313, 330, 464, 653, 729
AclWI	GGATC	4 cut(s)	12, 18, 374, 591
AcoI	YGGCCR	2 cut(s)	190, 726
AcsI	RAATTY	1 cut(s)	700
AcyI	GRCGYC	3 cut(s)	219, 417, 449
AfaI	GTAC	2 cut(s)	56, 434
AfiI	CCNNNNNNNGG	1 cut(s)	658
AgsI	TTSAA	1 cut(s)	472
AhdI	GACNNNNNGTC	1 cut(s)	206
AjiI	CACGTC	3 cut(s)	203, 355, 493
AjnI	CCWGG	1 cut(s)	81
AlwI	GGATC	4 cut(s)	12, 18, 374, 591
Ama87I	CYCGRG	2 cut(s)	74, 611
Aor13HI	TCCGGA	1 cut(s)	7
AoxI	GGCC	4 cut(s)	84, 137, 190, 726
ApeKI	GCWGC	1 cut(s)	720
ApoI	RAATTY	1 cut(s)	700
AspA2I	CCTAGG	1 cut(s)	361
AspLEI	GCGC	1 cut(s)	419
AspS9I	GGNCC	2 cut(s)	79, 295
AsuC2I	CCSGG	3 cut(s)	477, 612, 613
AsuHPI	GGTGA	1 cut(s)	391
AvaI	CYCGRG	2 cut(s)	74, 611
AvaII	GGWCC	2 cut(s)	79, 295
AvrII	CCTAGG	1 cut(s)	361
AxyI	CCTNAGG	1 cut(s)	498
BaeGI	GKGCMC	1 cut(s)	618
BamHI	GGATCC	1 cut(s)	4
BanI	GGYRCC	1 cut(s)	416
BarI	GAAGNNNNNNTAC	6 cut(s)	127, 159, 419, 425, 451, 457
BauI	CACGAG	1 cut(s)	617
BbvI	GCAGC	1 cut(s)	707
BccI	CCATC	7 cut(s)	239, 286, 314, 416, 550, 622, 652
BceAI	ACGGC	8 cut(s)	35, 73, 191, 205, 317, 334, 454, 582
BciT130I	CCWGG	1 cut(s)	83
BcnI	CCSGG	3 cut(s)	477, 612, 613
BfaI	CTAG	1 cut(s)	362
BfoI	RGCGCY	1 cut(s)	420
BisI	GCNGC	3 cut(s)	193, 721, 729
BlnI	CCTAGG	1 cut(s)	361
BlsI	GCNGC	3 cut(s)	194, 722, 730
Bme1390I	CCNGG	4 cut(s)	83, 477, 612, 613
Bme18I	GGWCC	2 cut(s)	79, 295
BmeRI	GACNNNNNGTC	1 cut(s)	206
BmeT110I	CYCGRG	2 cut(s)	74, 611
BmgBI	CACGTC	3 cut(s)	203, 355, 493
BmgT120I	GGNCC	2 cut(s)	79, 295
BmiI	GGNNCC	4 cut(s)	6, 124, 274, 418
BmrFI	CCNGG	4 cut(s)	83, 477, 612, 613
BmrI	ACTGGG	1 cut(s)	126
BmuI	ACTGGG	1 cut(s)	126
BoxI	GACNNNNGTC	1 cut(s)	353
BpuMI	CCSGG	3 cut(s)	477, 612, 613
BsaBI	GATNNNNATC	1 cut(s)	9
BsaHI	GRCGYC	3 cut(s)	219, 417, 449
BsaJI	CCNNGG	6 cut(s)	75, 187, 361, 476, 611, 709
BsaWI	WCCGGW	2 cut(s)	7, 269
Bsc4I	CCNNNNNNNGG	1 cut(s)	658
Bse1I	ACTGG	1 cut(s)	132
Bse21I	CCTNAGG	1 cut(s)	498
Bse8I	GATNNNNATC	1 cut(s)	9
BseAI	TCCGGA	1 cut(s)	7
BseBI	CCWGG	1 cut(s)	83
BseDI	CCNNGG	6 cut(s)	75, 187, 361, 476, 611, 709
BseGI	GGATG	2 cut(s)	508, 637
BseJI	GATNNNNATC	1 cut(s)	9
BseLI	CCNNNNNNNGG	1 cut(s)	658
BseNI	ACTGG	1 cut(s)	132
BseRI	GAGGAG	4 cut(s)	94, 97, 100, 269
BseSI	GKGCMC	1 cut(s)	618
BseX3I	CGGCCG	1 cut(s)	190
BseXI	GCAGC	1 cut(s)	707
Bsh1285I	CGRYCG	1 cut(s)	193
BshFI	GGCC	4 cut(s)	86, 139, 192, 728
BshNI	GGYRCC	1 cut(s)	416
BsiEI	CGRYCG	1 cut(s)	193
BsiHKCI	CYCGRG	2 cut(s)	74, 611
BsiSI	CCGG	4 cut(s)	8, 270, 476, 612
BslI	CCNNNNNNNGG	1 cut(s)	658
BsmI	GAATGC	1 cut(s)	329
BsnI	GGCC	4 cut(s)	86, 139, 192, 728
BsoBI	CYCGRG	2 cut(s)	74, 611
Bsp1286I	GDGCHC	1 cut(s)	618
Bsp13I	TCCGGA	1 cut(s)	7
Bsp143I	GATC	4 cut(s)	4, 10, 366, 583
Bsp19I	CCATGG	1 cut(s)	709
BspACI	CCGC	9 cut(s)	99, 166, 193, 303, 313, 330, 464, 653, 729
BspANI	GGCC	4 cut(s)	86, 139, 192, 728
BspEI	TCCGGA	1 cut(s)	7
BspLI	GGNNCC	4 cut(s)	6, 124, 274, 418
BspPI	GGATC	4 cut(s)	12, 18, 374, 591
BspT107I	GGYRCC	1 cut(s)	416
BsrI	ACTGG	1 cut(s)	132
BssECI	CCNNGG	6 cut(s)	75, 187, 361, 476, 611, 709
BssMI	GATC	4 cut(s)	4, 10, 366, 583
BssNI	GRCGYC	3 cut(s)	219, 417, 449
BssSI	CACGAG	1 cut(s)	617
BssT1I	CCWWGG	2 cut(s)	361, 709
Bst2BI	CACGAG	1 cut(s)	617
Bst2UI	CCWGG	1 cut(s)	83
Bst4CI	ACNGT	3 cut(s)	407, 487, 602
BstACI	GRCGYC	3 cut(s)	219, 417, 449
BstDEI	CTNAG	1 cut(s)	498
BstDSI	CCRYGG	2 cut(s)	187, 709
BstF5I	GGATG	2 cut(s)	508, 637
BstH2I	RGCGCY	1 cut(s)	420
BstHHI	GCGC	1 cut(s)	419
BstKTI	GATC	4 cut(s)	7, 13, 369, 586
BstMBI	GATC	4 cut(s)	4, 10, 366, 583
BstMCI	CGRYCG	1 cut(s)	193
BstNI	CCWGG	1 cut(s)	83
BstPAI	GACNNNNGTC	1 cut(s)	353
BstSCI	CCNGG	4 cut(s)	81, 475, 610, 611
BstSLI	GKGCMC	1 cut(s)	618
BstV1I	GCAGC	1 cut(s)	707
BstX2I	RGATCY	2 cut(s)	4, 366
BstXI	CCANNNNNNTGG	2 cut(s)	26, 716
BstYI	RGATCY	2 cut(s)	4, 366
BstZI	CGGCCG	1 cut(s)	190
Bsu36I	CCTNAGG	1 cut(s)	498
BsuRI	GGCC	4 cut(s)	86, 139, 192, 728
BtgI	CCRYGG	2 cut(s)	187, 709
BtrI	CACGTC	3 cut(s)	203, 355, 493
BtsCI	GGATG	2 cut(s)	508, 637
BtsI	GCAGTG	1 cut(s)	682
BtsIMutI	CAGTG	2 cut(s)	558, 682
CfoI	GCGC	1 cut(s)	419
Cfr13I	GGNCC	2 cut(s)	79, 295
Cfr9I	CCCGGG	1 cut(s)	611
CseI	GACGC	2 cut(s)	208, 457
Csp6I	GTAC	2 cut(s)	55, 433
CviAII	CATG	5 cut(s)	346, 539, 710, 724, 732
CviQI	GTAC	2 cut(s)	55, 433
DdeI	CTNAG	1 cut(s)	498
DinI	GGCGCC	1 cut(s)	418
DpnI	GATC	4 cut(s)	6, 12, 368, 585
DpnII	GATC	4 cut(s)	4, 10, 366, 583
DraI	TTTAAA	1 cut(s)	412
DriI	GACNNNNNGTC	1 cut(s)	206
EaeI	YGGCCR	2 cut(s)	190, 726
EagI	CGGCCG	1 cut(s)	190
Eam1105I	GACNNNNNGTC	1 cut(s)	206
EciI	GGCGGA	2 cut(s)	88, 155
EclXI	CGGCCG	1 cut(s)	190
Eco130I	CCWWGG	2 cut(s)	361, 709
Eco47I	GGWCC	2 cut(s)	79, 295
Eco52I	CGGCCG	1 cut(s)	190
Eco81I	CCTNAGG	1 cut(s)	498
Eco88I	CYCGRG	2 cut(s)	74, 611
EcoRI	GAATTC	1 cut(s)	700
EcoRII	CCWGG	1 cut(s)	81
EcoT14I	CCWWGG	2 cut(s)	361, 709
EgeI	GGCGCC	1 cut(s)	418
EheI	GGCGCC	1 cut(s)	418
ErhI	CCWWGG	2 cut(s)	361, 709
FaeI	CATG	5 cut(s)	349, 542, 713, 727, 735
FaiI	YATR	9 cut(s)	248, 347, 513, 540, 545, 605, 711, 725, 733
FatI	CATG	5 cut(s)	345, 538, 709, 723, 731
FauI	CCCGC	2 cut(s)	310, 660
Fnu4HI	GCNGC	3 cut(s)	193, 721, 729
FokI	GGATG	2 cut(s)	515, 644
Fsp4HI	GCNGC	3 cut(s)	193, 721, 729
FspBI	CTAG	1 cut(s)	362
GlaI	GCGC	1 cut(s)	418
GluI	GCNGC	3 cut(s)	193, 721, 729
HaeII	RGCGCY	1 cut(s)	420
HaeIII	GGCC	4 cut(s)	86, 139, 192, 728
HapII	CCGG	4 cut(s)	8, 270, 476, 612
HgaI	GACGC	2 cut(s)	208, 457
HhaI	GCGC	1 cut(s)	419
Hin1I	GRCGYC	3 cut(s)	219, 417, 449
Hin1II	CATG	5 cut(s)	349, 542, 713, 727, 735
Hin6I	GCGC	1 cut(s)	417
HinP1I	GCGC	1 cut(s)	417
HincII	GTYRAC	1 cut(s)	256
HindII	GTYRAC	1 cut(s)	256
HinfI	GANTC	3 cut(s)	23, 30, 349
HpaII	CCGG	4 cut(s)	8, 270, 476, 612
HphI	GGTGA	1 cut(s)	391
Hpy166II	GTNNAC	4 cut(s)	55, 256, 490, 564
Hpy188I	TCNGA	2 cut(s)	583, 699
Hpy188III	TCNNGA	5 cut(s)	8, 27, 223, 289, 445
Hpy8I	GTNNAC	4 cut(s)	55, 256, 490, 564
Hpy99I	CGWCG	2 cut(s)	204, 212
HpyAV	CCTTC	3 cut(s)	153, 448, 616
HpyCH4III	ACNGT	3 cut(s)	407, 487, 602
HpyCH4IV	ACGT	3 cut(s)	202, 354, 492
HpyCH4V	TGCA	4 cut(s)	117, 327, 675, 723
HpyF3I	CTNAG	1 cut(s)	498
HpySE526I	ACGT	3 cut(s)	202, 354, 492
Hsp92I	GRCGYC	3 cut(s)	219, 417, 449
Hsp92II	CATG	5 cut(s)	349, 542, 713, 727, 735
HspAI	GCGC	1 cut(s)	417
KasI	GGCGCC	1 cut(s)	416
Kpn2I	TCCGGA	1 cut(s)	7
Kzo9I	GATC	4 cut(s)	4, 10, 366, 583
LmnI	GCTCC	2 cut(s)	128, 377
Lsp1109I	GCAGC	1 cut(s)	707
MaeI	CTAG	1 cut(s)	362
MaeII	ACGT	3 cut(s)	202, 354, 492
MaeIII	GTNAC	3 cut(s)	334, 445, 592
MalI	GATC	4 cut(s)	6, 12, 368, 585
MboI	GATC	4 cut(s)	4, 10, 366, 583
MboII	GAAGA	4 cut(s)	138, 379, 382, 439
MflI	RGATCY	2 cut(s)	4, 366
MhlI	GDGCHC	1 cut(s)	618
MluCI	AATT	1 cut(s)	700
Mly113I	GGCGCC	1 cut(s)	417
MlyI	GAGTC	2 cut(s)	17, 343
MmeI	TCCRAC	1 cut(s)	150
MroI	TCCGGA	1 cut(s)	7
MseI	TTAA	1 cut(s)	411
MspA1I	CMGCKG	1 cut(s)	655
MspI	CCGG	4 cut(s)	8, 270, 476, 612
MspR9I	CCNGG	4 cut(s)	83, 477, 612, 613
Mva1269I	GAATGC	1 cut(s)	329
MvaI	CCWGG	1 cut(s)	83
NarI	GGCGCC	1 cut(s)	417
NciI	CCSGG	3 cut(s)	477, 612, 613
NcoI	CCATGG	1 cut(s)	709
NdeII	GATC	4 cut(s)	4, 10, 366, 583
NlaIII	CATG	5 cut(s)	349, 542, 713, 727, 735
NlaIV	GGNNCC	4 cut(s)	6, 124, 274, 418
NmuCI	GTSAC	3 cut(s)	334, 445, 592
PcsI	WCGNNNNNNNCGW	2 cut(s)	216, 572
PctI	GAATGC	1 cut(s)	329
PfeI	GAWTC	1 cut(s)	30
PkrI	GCNGC	3 cut(s)	194, 722, 730
PleI	GAGTC	2 cut(s)	17, 343
PluTI	GGCGCC	1 cut(s)	420
PpsI	GAGTC	2 cut(s)	17, 343
PshAI	GACNNNNGTC	1 cut(s)	353
Psp6I	CCWGG	1 cut(s)	81
PspGI	CCWGG	1 cut(s)	81
PspN4I	GGNNCC	4 cut(s)	6, 124, 274, 418
PspPI	GGNCC	2 cut(s)	79, 295
PsuI	RGATCY	2 cut(s)	4, 366
RsaI	GTAC	2 cut(s)	56, 434
RsaNI	GTAC	2 cut(s)	55, 433
SaqAI	TTAA	1 cut(s)	411
SatI	GCNGC	3 cut(s)	193, 721, 729
Sau3AI	GATC	4 cut(s)	4, 10, 366, 583
Sau96I	GGNCC	2 cut(s)	79, 295
SchI	GAGTC	2 cut(s)	17, 343
ScrFI	CCNGG	4 cut(s)	83, 477, 612, 613
SduI	GDGCHC	1 cut(s)	618
SetI	ASST	7 cut(s)	145, 205, 245, 357, 495, 512, 639
SfoI	GGCGCC	1 cut(s)	418
SinI	GGWCC	2 cut(s)	79, 295
SmaI	CCCGGG	1 cut(s)	613
Sse9I	AATT	1 cut(s)	700
SsiI	CCGC	9 cut(s)	99, 166, 193, 303, 313, 330, 464, 653, 729
SspDI	GGCGCC	1 cut(s)	416
SspMI	CTAG	1 cut(s)	362
StyD4I	CCNGG	4 cut(s)	81, 475, 610, 611
StyI	CCWWGG	2 cut(s)	361, 709
TaaI	ACNGT	3 cut(s)	407, 487, 602
TaiI	ACGT	3 cut(s)	205, 357, 495
TaqI	TCGA	1 cut(s)	288
TasI	AATT	1 cut(s)	700
TatI	WGTACW	1 cut(s)	432
TauI	GCSGC	2 cut(s)	195, 731
TfiI	GAWTC	1 cut(s)	30
Tru1I	TTAA	1 cut(s)	411
Tru9I	TTAA	1 cut(s)	411
TscAI	CASTG	2 cut(s)	558, 682
TseFI	GTSAC	3 cut(s)	334, 445, 592
TseI	GCWGC	1 cut(s)	720
Tsp45I	GTSAC	3 cut(s)	334, 445, 592
TspDTI	ATGAA	2 cut(s)	138, 527
TspGWI	ACGGA	2 cut(s)	542, 611
TspMI	CCCGGG	1 cut(s)	611
TspRI	CASTG	2 cut(s)	558, 682
VpaK11BI	GGWCC	2 cut(s)	79, 295
XapI	RAATTY	1 cut(s)	700
XmaI	CCCGGG	1 cut(s)	611
XmaJI	CCTAGG	1 cut(s)	361
XspI	CTAG	1 cut(s)	362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.