Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0014103

Physical Location & Seq

Genomic Coordinates Reverse (-)

66311707 .. 66312693

Gene Structure 987 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0533100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGATGAAAATCTTTCGAAAGACGGTGTTCCAATTTCTATCATTCATTGAGGGGAAATTCAATGAACTGAAGAAGATGAAGAACAAGTTGTTGCGTACATGTGATGTTTGCAATAAATCAAGTAATGAATTGCAAAGCAAAAGTTTTGGGGGCCAAAGAATTTGTTCGGGACATGTATCTGATGGGACTCCTAGATGTACTAGTTGTGGTAGATTTAAGCACGTAAAAACAAAATATGTGAACCTTGATGGTGGGCAACTTTGCTCGGATTGCTATTCTATTGCTATTTTGGATCCACAACAATTAGAACCCATCATTGGAAACGTGCATGAATTCTACAAAAGTTTAAATCTTGAAGTGAATAAAGACATTCGAATTATGTTGGTCGACCAGGAAGAGATGTGCAAACGTTGCAGAGAAAAACTCAGTACAGAAGATCAACACGGTTATAGAGGACTTCTTACTGGTGTTACATTTTTCCCAAGACGGCGTGCTCGTGTTCTCACGAGCATTACAAAATGTTCAAAAATTGGGGAAGATATCCAAGTGGAGAAAAAAAGGGGCTCATCCCCGCGTAACAAACTTACAATTCTAGTTTTGTTCGGAGTACCAGACCTGTTGGTCGGTGATACTTTGGCAGACGCGATGATGTATGCATGGTTGCACCTTCAAGATCAAGATTGTAGGAAAAAAATCGAAGAAAAGGTTGAAGAAGGGATTTGTGAAGTGATGGGCCACAAGTGGATGGAAAGGTTCTGTTCCAGTGATGATCTTGATCACTCCTCATACAAAACTTATAAGCAGGGCCAGTTTAAGAGAAATTTGAAACAATATGTGGTAGAATCAACGGAAACCCATCCAGACATTTATGGCCAAGGATACAGAGAGGCTACTAGGGCAGTTGAAAAGTTTGGCTTCCAAACTACTCTAAACCATATTGTTCAAAAAGGAAGTTTCCCTCACCGCGAAAAAAATCGTAGGACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000325 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009705 GO:0009987 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0031090 GO:0032501 GO:0032502 GO:0032504 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0051704 GO:0055046 GO:0071840 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF679

Protein Analysis

328

Amino Acids

37.94

Weight (kDa)

9.16

Isoelectric Point (pI)

44.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DA1-like	PF12315	116 - 314	1.8e-32	Protein DA1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09157 AT5G39650
fragaria_vesca	FvH4_6g48440
malus_domestica	MD00G1130800.v1.1 MD09G1051900.v1.1
prunus_persica	Prupe.3G266800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0168351
rosa_laevigata	RLG00000021769
rosa_multiflora	Rmu_sc0003354.1_g000017
rosa_roxburghii	Rroxscaffold_2G00083120
rosa_rugosa	Rorug02G0533100
rosa_samantha	Rh2AG602200 Rh2BG615500 Rh2CG583200 Rh2DG625700
rosa_wichuraiana	Rw0G019820 Rw2G049990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	798
AasI	GACNNNNNNGTC	1 cut(s)	620
AccI	GTMKAC	1 cut(s)	387
AccII	CGCG	3 cut(s)	574, 644, 966
AciI	CCGC	2 cut(s)	572, 964
AclI	AACGTT	1 cut(s)	409
AclWI	GGATC	2 cut(s)	287, 300
AcoI	YGGCCR	1 cut(s)	871
AcsI	RAATTY	4 cut(s)	56, 159, 332, 820
AcuI	CTGAAG	1 cut(s)	89
AfaI	GTAC	4 cut(s)	97, 199, 430, 609
AfiI	CCNNNNNNNGG	1 cut(s)	317
AflIII	ACRYGT	2 cut(s)	98, 172
AgsI	TTSAA	8 cut(s)	61, 356, 525, 671, 710, 826, 905, 944
AhlI	ACTAGT	1 cut(s)	200
AjnI	CCWGG	1 cut(s)	390
AjuI	GAANNNNNNNTTGG	2 cut(s)	300, 332
Alw21I	GWGCWC	1 cut(s)	496
AlwI	GGATC	2 cut(s)	287, 300
AoxI	GGCC	4 cut(s)	151, 733, 805, 871
ApoI	RAATTY	4 cut(s)	56, 159, 332, 820
Asp700I	GAANNNNTTC	1 cut(s)	163
AspS9I	GGNCC	3 cut(s)	151, 733, 805
AsuHPI	GGTGA	2 cut(s)	638, 953
AsuII	TTCGAA	2 cut(s)	16, 373
BalI	TGGCCA	1 cut(s)	873
BamHI	GGATCC	1 cut(s)	292
BanII	GRGCYC	1 cut(s)	566
BauI	CACGAG	2 cut(s)	495, 505
Bbv12I	GWGCWC	1 cut(s)	496
BccI	CCATC	6 cut(s)	176, 242, 320, 724, 739, 864
BceAI	ACGGC	1 cut(s)	503
BciT130I	CCWGG	1 cut(s)	392
BciVI	GTATCC	1 cut(s)	872
BclI	TGATCA	1 cut(s)	775
BcuI	ACTAGT	1 cut(s)	200
BfaI	CTAG	4 cut(s)	192, 201, 593, 894
BfuI	GTATCC	1 cut(s)	872
Bme1390I	CCNGG	1 cut(s)	392
BmgT120I	GGNCC	3 cut(s)	151, 733, 805
BmiI	GGNNCC	2 cut(s)	152, 294
BmrFI	CCNGG	1 cut(s)	392
BplI	GAGNNNNNCTC	2 cut(s)	408, 440
Bpu14I	TTCGAA	2 cut(s)	16, 373
BsaAI	YACGTR	1 cut(s)	223
BsaBI	GATNNNNATC	2 cut(s)	8, 774
BsaJI	CCNNGG	1 cut(s)	874
Bsc4I	CCNNNNNNNGG	1 cut(s)	317
Bse1I	ACTGG	3 cut(s)	469, 762, 808
Bse8I	GATNNNNATC	2 cut(s)	8, 774
BseBI	CCWGG	1 cut(s)	392
BseDI	CCNNGG	1 cut(s)	874
BseGI	GGATG	3 cut(s)	566, 750, 856
BseJI	GATNNNNATC	2 cut(s)	8, 774
BseLI	CCNNNNNNNGG	1 cut(s)	317
BseMII	CTCAG	1 cut(s)	439
BseNI	ACTGG	3 cut(s)	469, 762, 808
BseRI	GAGGAG	1 cut(s)	772
Bsh1236I	CGCG	3 cut(s)	574, 644, 966
BshFI	GGCC	4 cut(s)	153, 735, 807, 873
BsiHKAI	GWGCWC	1 cut(s)	496
BslFI	GGGAC	2 cut(s)	183, 199
BslI	CCNNNNNNNGG	1 cut(s)	317
BsmFI	GGGAC	2 cut(s)	183, 199
BsnI	GGCC	4 cut(s)	153, 735, 807, 873
Bsp119I	TTCGAA	2 cut(s)	16, 373
Bsp1286I	GDGCHC	2 cut(s)	496, 566
Bsp143I	GATC	5 cut(s)	292, 436, 673, 769, 775
BspACI	CCGC	2 cut(s)	572, 964
BspANI	GGCC	4 cut(s)	153, 735, 807, 873
BspCNI	CTCAG	1 cut(s)	438
BspFNI	CGCG	3 cut(s)	574, 644, 966
BspLI	GGNNCC	2 cut(s)	152, 294
BspPI	GGATC	2 cut(s)	287, 300
BspT104I	TTCGAA	2 cut(s)	16, 373
BsrI	ACTGG	3 cut(s)	469, 762, 808
BssECI	CCNNGG	1 cut(s)	874
BssMI	GATC	5 cut(s)	292, 436, 673, 769, 775
BssSI	CACGAG	2 cut(s)	495, 505
BssT1I	CCWWGG	1 cut(s)	874
Bst2BI	CACGAG	2 cut(s)	495, 505
Bst2UI	CCWGG	1 cut(s)	392
Bst4CI	ACNGT	2 cut(s)	25, 446
Bst6I	CTCTTC	1 cut(s)	390
BstAPI	GCANNNNNTGC	1 cut(s)	411
BstBAI	YACGTR	1 cut(s)	223
BstBI	TTCGAA	2 cut(s)	16, 373
BstC8I	GCNNGC	1 cut(s)	492
BstDEI	CTNAG	1 cut(s)	425
BstF5I	GGATG	3 cut(s)	566, 750, 856
BstFNI	CGCG	3 cut(s)	574, 644, 966
BstKTI	GATC	5 cut(s)	295, 439, 676, 772, 778
BstMBI	GATC	5 cut(s)	292, 436, 673, 769, 775
BstMWI	GCNNNNNNNGC	3 cut(s)	270, 411, 896
BstNI	CCWGG	1 cut(s)	392
BstNSI	RCATGY	2 cut(s)	102, 176
BstSCI	CCNGG	1 cut(s)	390
BstUI	CGCG	3 cut(s)	574, 644, 966
BstX2I	RGATCY	1 cut(s)	292
BstYI	RGATCY	1 cut(s)	292
BsuI	GTATCC	1 cut(s)	872
BsuRI	GGCC	4 cut(s)	153, 735, 807, 873
BtgZI	GCGATG	1 cut(s)	659
BtsCI	GGATG	3 cut(s)	566, 750, 856
BtsIMutI	CAGTG	1 cut(s)	769
Cac8I	GCNNGC	1 cut(s)	492
Cfr13I	GGNCC	3 cut(s)	151, 733, 805
CseI	GACGC	1 cut(s)	650
Csp6I	GTAC	4 cut(s)	96, 198, 429, 608
CviAII	CATG	4 cut(s)	99, 173, 329, 657
CviJI	RGCY	7 cut(s)	153, 564, 735, 807, 873, 890, 915
CviKI_1	RGCY	7 cut(s)	153, 564, 735, 807, 873, 890, 915
CviQI	GTAC	4 cut(s)	96, 198, 429, 608
DdeI	CTNAG	1 cut(s)	425
DpnI	GATC	5 cut(s)	294, 438, 675, 771, 777
DpnII	GATC	5 cut(s)	292, 436, 673, 769, 775
DraI	TTTAAA	1 cut(s)	348
DrdI	GACNNNNNNGTC	1 cut(s)	620
DseDI	GACNNNNNNGTC	1 cut(s)	620
EaeI	YGGCCR	1 cut(s)	871
Eam1104I	CTCTTC	1 cut(s)	390
EarI	CTCTTC	1 cut(s)	390
Eco130I	CCWWGG	1 cut(s)	874
Eco24I	GRGCYC	1 cut(s)	566
Eco32I	GATATC	1 cut(s)	541
Eco57I	CTGAAG	1 cut(s)	89
EcoRI	GAATTC	1 cut(s)	332
EcoRII	CCWGG	1 cut(s)	390
EcoRV	GATATC	1 cut(s)	541
EcoT14I	CCWWGG	1 cut(s)	874
EcoT22I	ATGCAT	1 cut(s)	658
EcoT38I	GRGCYC	1 cut(s)	566
ErhI	CCWWGG	1 cut(s)	874
FaeI	CATG	4 cut(s)	102, 176, 332, 660
FalI	AAGNNNNNCTT	2 cut(s)	899, 931
FaqI	GGGAC	2 cut(s)	183, 199
FatI	CATG	4 cut(s)	98, 172, 328, 656
FauI	CCCGC	1 cut(s)	579
FbaI	TGATCA	1 cut(s)	775
FblI	GTMKAC	1 cut(s)	387
FokI	GGATG	3 cut(s)	553, 757, 843
FriOI	GRGCYC	1 cut(s)	566
FspBI	CTAG	4 cut(s)	192, 201, 593, 894
HaeIII	GGCC	4 cut(s)	153, 735, 807, 873
HgaI	GACGC	1 cut(s)	650
Hin1II	CATG	4 cut(s)	102, 176, 332, 660
HincII	GTYRAC	1 cut(s)	388
HindII	GTYRAC	1 cut(s)	388
HinfI	GANTC	2 cut(s)	187, 842
HphI	GGTGA	2 cut(s)	638, 953
Hpy166II	GTNNAC	2 cut(s)	241, 388
Hpy188I	TCNGA	3 cut(s)	181, 268, 605
Hpy188III	TCNNGA	7 cut(s)	168, 353, 505, 671, 677, 773, 860
Hpy8I	GTNNAC	2 cut(s)	241, 388
HpyAV	CCTTC	2 cut(s)	677, 707
HpyCH4III	ACNGT	2 cut(s)	25, 446
HpyCH4IV	ACGT	4 cut(s)	222, 324, 409, 983
HpyCH4V	TGCA	7 cut(s)	111, 133, 328, 405, 414, 656, 664
HpyF10VI	GCNNNNNNNGC	3 cut(s)	270, 411, 896
HpyF3I	CTNAG	1 cut(s)	425
HpySE526I	ACGT	4 cut(s)	222, 324, 409, 983
Hsp92II	CATG	4 cut(s)	102, 176, 332, 660
Ksp22I	TGATCA	1 cut(s)	775
Kzo9I	GATC	5 cut(s)	292, 436, 673, 769, 775
LpnPI	CCDG	9 cut(s)	377, 404, 450, 624, 629, 775, 788, 821, 873
MaeI	CTAG	4 cut(s)	192, 201, 593, 894
MaeII	ACGT	4 cut(s)	222, 324, 409, 983
MaeIII	GTNAC	2 cut(s)	469, 575
MalI	GATC	5 cut(s)	294, 438, 675, 771, 777
MboI	GATC	5 cut(s)	292, 436, 673, 769, 775
MboII	GAAGA	8 cut(s)	82, 85, 91, 407, 446, 548, 710, 722
MflI	RGATCY	1 cut(s)	292
MhlI	GDGCHC	2 cut(s)	496, 566
MlsI	TGGCCA	1 cut(s)	873
MluNI	TGGCCA	1 cut(s)	873
MlyI	GAGTC	1 cut(s)	181
MnlI	CCTC	5 cut(s)	43, 446, 793, 880, 969
Mox20I	TGGCCA	1 cut(s)	873
Mph1103I	ATGCAT	1 cut(s)	658
MroXI	GAANNNNTTC	1 cut(s)	163
MscI	TGGCCA	1 cut(s)	873
MseI	TTAA	3 cut(s)	216, 347, 813
Msp20I	TGGCCA	1 cut(s)	873
MspR9I	CCNGG	1 cut(s)	392
MvaI	CCWGG	1 cut(s)	392
MvnI	CGCG	3 cut(s)	574, 644, 966
MwoI	GCNNNNNNNGC	3 cut(s)	270, 411, 896
NdeII	GATC	5 cut(s)	292, 436, 673, 769, 775
NlaIII	CATG	4 cut(s)	102, 176, 332, 660
NlaIV	GGNNCC	2 cut(s)	152, 294
NsiI	ATGCAT	1 cut(s)	658
NspI	RCATGY	2 cut(s)	102, 176
NspV	TTCGAA	2 cut(s)	16, 373
PciI	ACATGT	2 cut(s)	98, 172
PcsI	WCGNNNNNNNCGW	1 cut(s)	493
PdmI	GAANNNNTTC	1 cut(s)	163
PfeI	GAWTC	1 cut(s)	842
PleI	GAGTC	1 cut(s)	181
PpsI	GAGTC	1 cut(s)	181
Ppu21I	YACGTR	1 cut(s)	223
PscI	ACATGT	2 cut(s)	98, 172
PsiI	TTATAA	1 cut(s)	798
Psp1406I	AACGTT	1 cut(s)	409
Psp6I	CCWGG	1 cut(s)	390
PspGI	CCWGG	1 cut(s)	390
PspN4I	GGNNCC	2 cut(s)	152, 294
PspPI	GGNCC	3 cut(s)	151, 733, 805
PsuI	RGATCY	1 cut(s)	292
RsaI	GTAC	4 cut(s)	97, 199, 430, 609
RsaNI	GTAC	4 cut(s)	96, 198, 429, 608
SalI	GTCGAC	1 cut(s)	386
SaqAI	TTAA	3 cut(s)	216, 347, 813
Sau3AI	GATC	5 cut(s)	292, 436, 673, 769, 775
Sau96I	GGNCC	3 cut(s)	151, 733, 805
SchI	GAGTC	1 cut(s)	181
ScrFI	CCNGG	1 cut(s)	392
SduI	GDGCHC	2 cut(s)	496, 566
SetI	ASST	9 cut(s)	225, 246, 327, 412, 618, 669, 708, 755, 986
SfuI	TTCGAA	2 cut(s)	16, 373
SpeI	ACTAGT	1 cut(s)	200
SsiI	CCGC	2 cut(s)	572, 964
SspMI	CTAG	4 cut(s)	192, 201, 593, 894
StyD4I	CCNGG	1 cut(s)	390
StyI	CCWWGG	1 cut(s)	874
TaaI	ACNGT	2 cut(s)	25, 446
TaiI	ACGT	4 cut(s)	225, 327, 412, 986
TaqI	TCGA	4 cut(s)	16, 373, 387, 696
TatI	WGTACW	2 cut(s)	197, 428
TfiI	GAWTC	1 cut(s)	842
Tru1I	TTAA	3 cut(s)	216, 347, 813
Tru9I	TTAA	3 cut(s)	216, 347, 813
TscAI	CASTG	1 cut(s)	769
TspDTI	ATGAA	6 cut(s)	20, 34, 78, 92, 141, 345
TspGWI	ACGGA	1 cut(s)	863
TspRI	CASTG	1 cut(s)	769
XapI	RAATTY	4 cut(s)	56, 159, 332, 820
XceI	RCATGY	2 cut(s)	102, 176
XmiI	GTMKAC	1 cut(s)	387
XmnI	GAANNNNTTC	1 cut(s)	163
XspI	CTAG	4 cut(s)	192, 201, 593, 894
Zsp2I	ATGCAT	1 cut(s)	658

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.