Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0014103

Physical Location & Seq

Genomic Coordinates Forward (+)

28206421 .. 28207140

Gene Structure 720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1130800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGACCAAAAGACTGACGGCGTCGGAATCAAAATCTACAATAATGTAGTCTACGGGGATCCACACGACGACGAGGCCACCAAATCTCCACCAAAGCCACCGCAACCTTCTTCTTCATCTCAGCCTCTGCCCCTGCTCCGACTGAACCCGGACCACTTGCACGGCCGTAAACGGCGTGCCGTTGCGAAAGGGGTCCAGAAAACCCTATCCAAGACTTCAATGCTGGCCAACTTTCTTCCCACGGGCACTCTCCTAACCTTTGAAATGGTTCTCCCCGCTATCTACACAACCGGGGAGTGCACGCGTGTCACCACCATGATGACGTACGGGATCTTGGGCATGTGCGCCCTCTCATGCTTTTTCTTCCACTTCACGGACAGTTTCCGTGGTCCGGACGGGAAGTTGTACTATGGGTTCGTGACGCAGAAAGGGCTAGCGGTGTTTAAACCGGGCCTGATGGTGGAGGTGCCGAAGGAGGAGAGGTACAAGTTGGGGCTGTCGGACTTCGTTCATGCCATTATGTCCGTCATGGTGTTTGTGGCGATCGCATTTTCGGACCGCCGCGTGACGGACTGTTTGTTTCCGGGGCACGAGAAGGACATGGATGAAGTGATGGAGAGTTTCCCGTTGATGGTGGGAATCGTGTGCAGCGGCTTGTTTCTTGTGTTTCCGAGTACTCGCTACGGGATTGGCTGCATGGCTGCATGGCTGCGTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000325 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009705 GO:0009987 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0031090 GO:0032501 GO:0032502 GO:0032504 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0051704 GO:0055046 GO:0071840 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF679

Protein Analysis

240

Amino Acids

26.57

Weight (kDa)

8.17

Isoelectric Point (pI)

34.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF679	PF05078	71 - 232	1.1e-63	Protein of unknown function (DUF679)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09157 AT5G39650
fragaria_vesca	FvH4_6g48440
malus_domestica	MD00G1130800.v1.1 MD09G1051900.v1.1
prunus_persica	Prupe.3G266800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0168351
rosa_laevigata	RLG00000021769
rosa_multiflora	Rmu_sc0003354.1_g000017
rosa_roxburghii	Rroxscaffold_2G00083120
rosa_rugosa	Rorug02G0533100
rosa_samantha	Rh2AG602200 Rh2BG615500 Rh2CG583200 Rh2DG625700
rosa_wichuraiana	Rw0G019820 Rw2G049990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	466
AccI	GTMKAC	1 cut(s)	51
AccII	CGCG	2 cut(s)	304, 564
AccIII	TCCGGA	1 cut(s)	391
AciI	CCGC	6 cut(s)	101, 276, 437, 559, 562, 651
AclWI	GGATC	3 cut(s)	53, 66, 338
AcoI	YGGCCR	2 cut(s)	163, 225
AcyI	GRCGYC	1 cut(s)	21
AfaI	GTAC	4 cut(s)	326, 407, 485, 676
AfiI	CCNNNNNNNGG	5 cut(s)	373, 391, 460, 568, 631
AflIII	ACRYGT	1 cut(s)	302
AgsI	TTSAA	2 cut(s)	219, 263
Alw21I	GWGCWC	1 cut(s)	302
Alw44I	GTGCAC	1 cut(s)	298
AlwI	GGATC	3 cut(s)	53, 66, 338
AlwNI	CAGNNNCTG	1 cut(s)	127
Aor13HI	TCCGGA	1 cut(s)	391
AoxI	GGCC	4 cut(s)	75, 163, 225, 451
ApaLI	GTGCAC	1 cut(s)	298
ApeKI	GCWGC	4 cut(s)	648, 693, 701, 709
ArsI	GACNNNNNNTTYG	2 cut(s)	559, 591
AsiSI	GCGATCGC	1 cut(s)	546
Asp700I	GAANNNNTTC	1 cut(s)	267
AspLEI	GCGC	1 cut(s)	347
AspS9I	GGNCC	6 cut(s)	4, 151, 193, 389, 451, 556
AsuC2I	CCSGG	4 cut(s)	149, 292, 450, 585
AsuHPI	GGTGA	1 cut(s)	301
AsuNHI	GCTAGC	1 cut(s)	433
AvaII	GGWCC	5 cut(s)	4, 151, 193, 389, 556
BaeGI	GKGCMC	3 cut(s)	248, 302, 591
BalI	TGGCCA	1 cut(s)	227
BamHI	GGATCC	1 cut(s)	58
BanI	GGYRCC	1 cut(s)	466
BauI	CACGAG	1 cut(s)	590
Bbv12I	GWGCWC	1 cut(s)	302
BbvI	GCAGC	4 cut(s)	660, 680, 688, 696
BccI	CCATC	3 cut(s)	451, 607, 625
BceAI	ACGGC	5 cut(s)	34, 150, 164, 178, 188
BcnI	CCSGG	4 cut(s)	149, 292, 450, 585
BfaI	CTAG	1 cut(s)	434
BisI	GCNGC	6 cut(s)	562, 649, 652, 694, 702, 710
BlsI	GCNGC	6 cut(s)	563, 650, 653, 695, 703, 711
BmcAI	AGTACT	1 cut(s)	676
Bme1390I	CCNGG	4 cut(s)	149, 292, 450, 585
Bme18I	GGWCC	5 cut(s)	4, 151, 193, 389, 556
BmgT120I	GGNCC	6 cut(s)	4, 151, 193, 389, 451, 556
BmiI	GGNNCC	3 cut(s)	60, 194, 468
BmrFI	CCNGG	4 cut(s)	149, 292, 450, 585
BmtI	GCTAGC	1 cut(s)	437
BpuMI	CCSGG	4 cut(s)	149, 292, 450, 585
BsaHI	GRCGYC	1 cut(s)	21
BsaJI	CCNNGG	4 cut(s)	240, 291, 385, 584
BsaWI	WCCGGW	1 cut(s)	391
BsaXI	ACNNNNNCTCC	4 cut(s)	70, 100, 467, 497
Bsc4I	CCNNNNNNNGG	5 cut(s)	373, 391, 460, 568, 631
BseAI	TCCGGA	1 cut(s)	391
BseDI	CCNNGG	4 cut(s)	240, 291, 385, 584
BseGI	GGATG	1 cut(s)	610
BseLI	CCNNNNNNNGG	5 cut(s)	373, 391, 460, 568, 631
BseMII	CTCAG	1 cut(s)	134
BseRI	GAGGAG	1 cut(s)	491
BseSI	GKGCMC	3 cut(s)	248, 302, 591
BseX3I	CGGCCG	1 cut(s)	163
BseXI	GCAGC	4 cut(s)	660, 680, 688, 696
BsgI	GTGCAG	1 cut(s)	667
Bsh1236I	CGCG	2 cut(s)	304, 564
Bsh1285I	CGRYCG	2 cut(s)	166, 546
BshFI	GGCC	4 cut(s)	77, 165, 227, 453
BshNI	GGYRCC	1 cut(s)	466
BsiEI	CGRYCG	2 cut(s)	166, 546
BsiHKAI	GWGCWC	1 cut(s)	302
BsiSI	CCGG	5 cut(s)	149, 291, 392, 449, 584
BsiWI	CGTACG	1 cut(s)	324
BslI	CCNNNNNNNGG	5 cut(s)	373, 391, 460, 568, 631
BsnI	GGCC	4 cut(s)	77, 165, 227, 453
Bsp1286I	GDGCHC	3 cut(s)	248, 302, 591
Bsp13I	TCCGGA	1 cut(s)	391
Bsp143I	GATC	3 cut(s)	58, 330, 543
BspACI	CCGC	6 cut(s)	101, 276, 437, 559, 562, 651
BspANI	GGCC	4 cut(s)	77, 165, 227, 453
BspCNI	CTCAG	1 cut(s)	133
BspEI	TCCGGA	1 cut(s)	391
BspFNI	CGCG	2 cut(s)	304, 564
BspLI	GGNNCC	3 cut(s)	60, 194, 468
BspOI	GCTAGC	1 cut(s)	437
BspPI	GGATC	3 cut(s)	53, 66, 338
BspT107I	GGYRCC	1 cut(s)	466
BssECI	CCNNGG	4 cut(s)	240, 291, 385, 584
BssMI	GATC	3 cut(s)	58, 330, 543
BssNI	GRCGYC	1 cut(s)	21
BssSI	CACGAG	1 cut(s)	590
Bst2BI	CACGAG	1 cut(s)	590
Bst4CI	ACNGT	2 cut(s)	380, 575
BstACI	GRCGYC	1 cut(s)	21
BstC8I	GCNNGC	4 cut(s)	177, 225, 302, 435
BstDEI	CTNAG	1 cut(s)	120
BstDSI	CCRYGG	2 cut(s)	240, 385
BstF5I	GGATG	1 cut(s)	610
BstFNI	CGCG	2 cut(s)	304, 564
BstHHI	GCGC	1 cut(s)	347
BstKTI	GATC	3 cut(s)	61, 333, 546
BstMBI	GATC	3 cut(s)	58, 330, 543
BstMCI	CGRYCG	2 cut(s)	166, 546
BstMWI	GCNNNNNNNGC	1 cut(s)	430
BstNSI	RCATGY	1 cut(s)	343
BstSCI	CCNGG	4 cut(s)	147, 290, 448, 583
BstSLI	GKGCMC	3 cut(s)	248, 302, 591
BstUI	CGCG	2 cut(s)	304, 564
BstV1I	GCAGC	4 cut(s)	660, 680, 688, 696
BstX2I	RGATCY	2 cut(s)	58, 330
BstYI	RGATCY	2 cut(s)	58, 330
BstZI	CGGCCG	1 cut(s)	163
BsuRI	GGCC	4 cut(s)	77, 165, 227, 453
BtgI	CCRYGG	2 cut(s)	240, 385
BtsCI	GGATG	1 cut(s)	610
Cac8I	GCNNGC	4 cut(s)	177, 225, 302, 435
CaiI	CAGNNNCTG	1 cut(s)	127
CfoI	GCGC	1 cut(s)	347
Cfr13I	GGNCC	6 cut(s)	4, 151, 193, 389, 451, 556
CpoI	CGGWCCG	1 cut(s)	556
CseI	GACGC	2 cut(s)	10, 430
Csp6I	GTAC	4 cut(s)	325, 406, 484, 675
CspI	CGGWCCG	1 cut(s)	556
CviAII	CATG	8 cut(s)	316, 340, 354, 512, 529, 601, 697, 705
CviQI	GTAC	4 cut(s)	325, 406, 484, 675
DdeI	CTNAG	1 cut(s)	120
DpnI	GATC	3 cut(s)	60, 332, 545
DpnII	GATC	3 cut(s)	58, 330, 543
DraI	TTTAAA	1 cut(s)	445
EaeI	YGGCCR	2 cut(s)	163, 225
EagI	CGGCCG	1 cut(s)	163
EclXI	CGGCCG	1 cut(s)	163
Eco47I	GGWCC	5 cut(s)	4, 151, 193, 389, 556
Eco52I	CGGCCG	1 cut(s)	163
FaeI	CATG	8 cut(s)	319, 343, 357, 515, 532, 604, 700, 708
FatI	CATG	8 cut(s)	315, 339, 353, 511, 528, 600, 696, 704
FauI	CCCGC	1 cut(s)	283
FblI	GTMKAC	1 cut(s)	51
Fnu4HI	GCNGC	6 cut(s)	562, 649, 652, 694, 702, 710
FokI	GGATG	1 cut(s)	617
Fsp4HI	GCNGC	6 cut(s)	562, 649, 652, 694, 702, 710
FspBI	CTAG	1 cut(s)	434
GlaI	GCGC	1 cut(s)	346
GluI	GCNGC	6 cut(s)	562, 649, 652, 694, 702, 710
HaeIII	GGCC	4 cut(s)	77, 165, 227, 453
HapII	CCGG	5 cut(s)	149, 291, 392, 449, 584
HgaI	GACGC	2 cut(s)	10, 430
HhaI	GCGC	1 cut(s)	347
Hin1I	GRCGYC	1 cut(s)	21
Hin1II	CATG	8 cut(s)	319, 343, 357, 515, 532, 604, 700, 708
Hin6I	GCGC	1 cut(s)	345
HinP1I	GCGC	1 cut(s)	345
HinfI	GANTC	2 cut(s)	27, 639
HpaII	CCGG	5 cut(s)	149, 291, 392, 449, 584
HphI	GGTGA	1 cut(s)	301
Hpy166II	GTNNAC	3 cut(s)	52, 170, 300
Hpy188I	TCNGA	5 cut(s)	26, 140, 502, 556, 672
Hpy188III	TCNNGA	3 cut(s)	196, 392, 418
Hpy8I	GTNNAC	3 cut(s)	52, 170, 300
Hpy99I	CGWCG	3 cut(s)	26, 71, 74
HpyAV	CCTTC	3 cut(s)	117, 466, 589
HpyCH4III	ACNGT	2 cut(s)	380, 575
HpyCH4IV	ACGT	1 cut(s)	323
HpyCH4V	TGCA	5 cut(s)	160, 300, 648, 696, 704
HpyF10VI	GCNNNNNNNGC	1 cut(s)	430
HpyF3I	CTNAG	1 cut(s)	120
HpySE526I	ACGT	1 cut(s)	323
Hsp92I	GRCGYC	1 cut(s)	21
Hsp92II	CATG	8 cut(s)	319, 343, 357, 515, 532, 604, 700, 708
HspAI	GCGC	1 cut(s)	345
Kpn2I	TCCGGA	1 cut(s)	391
Kzo9I	GATC	3 cut(s)	58, 330, 543
LmnI	GCTCC	1 cut(s)	141
LpnPI	CCDG	9 cut(s)	146, 162, 209, 209, 304, 405, 462, 467, 597
Lsp1109I	GCAGC	4 cut(s)	660, 680, 688, 696
MaeI	CTAG	1 cut(s)	434
MaeII	ACGT	1 cut(s)	323
MaeIII	GTNAC	3 cut(s)	307, 418, 565
MalI	GATC	3 cut(s)	60, 332, 545
MboI	GATC	3 cut(s)	58, 330, 543
MboII	GAAGA	4 cut(s)	102, 105, 227, 355
MflI	RGATCY	2 cut(s)	58, 330
MhlI	GDGCHC	3 cut(s)	248, 302, 591
MlsI	TGGCCA	1 cut(s)	227
MluI	ACGCGT	1 cut(s)	302
MluNI	TGGCCA	1 cut(s)	227
MmeI	TCCRAC	3 cut(s)	4, 163, 480
MnlI	CCTC	6 cut(s)	67, 135, 359, 457, 469, 474
Mox20I	TGGCCA	1 cut(s)	227
MroI	TCCGGA	1 cut(s)	391
MroXI	GAANNNNTTC	1 cut(s)	267
MscI	TGGCCA	1 cut(s)	227
MseI	TTAA	1 cut(s)	444
MslI	CAYNNNNRTG	2 cut(s)	314, 317
Msp20I	TGGCCA	1 cut(s)	227
MspA1I	CMGCKG	1 cut(s)	651
MspI	CCGG	5 cut(s)	149, 291, 392, 449, 584
MspR9I	CCNGG	4 cut(s)	149, 292, 450, 585
MssI	GTTTAAAC	1 cut(s)	445
MvnI	CGCG	2 cut(s)	304, 564
MwoI	GCNNNNNNNGC	1 cut(s)	430
NciI	CCSGG	4 cut(s)	149, 292, 450, 585
NdeII	GATC	3 cut(s)	58, 330, 543
NheI	GCTAGC	1 cut(s)	433
NlaIII	CATG	8 cut(s)	319, 343, 357, 515, 532, 604, 700, 708
NlaIV	GGNNCC	3 cut(s)	60, 194, 468
NmuCI	GTSAC	3 cut(s)	307, 418, 565
NspI	RCATGY	1 cut(s)	343
PdmI	GAANNNNTTC	1 cut(s)	267
PfeI	GAWTC	2 cut(s)	27, 639
Pfl23II	CGTACG	1 cut(s)	324
PflFI	GACNNNGTC	1 cut(s)	20
PkrI	GCNGC	6 cut(s)	563, 650, 653, 695, 703, 711
Ple19I	CGATCG	1 cut(s)	546
PmeI	GTTTAAAC	1 cut(s)	445
PspLI	CGTACG	1 cut(s)	324
PspN4I	GGNNCC	3 cut(s)	60, 194, 468
PspPI	GGNCC	6 cut(s)	4, 151, 193, 389, 451, 556
PsrI	GAACNNNNNNTAC	2 cut(s)	398, 430
PstNI	CAGNNNCTG	1 cut(s)	127
PsuI	RGATCY	2 cut(s)	58, 330
PsyI	GACNNNGTC	1 cut(s)	20
PvuI	CGATCG	1 cut(s)	546
RgaI	GCGATCGC	1 cut(s)	546
RsaI	GTAC	4 cut(s)	326, 407, 485, 676
RsaNI	GTAC	4 cut(s)	325, 406, 484, 675
RseI	CAYNNNNRTG	2 cut(s)	314, 317
Rsr2I	CGGWCCG	1 cut(s)	556
RsrII	CGGWCCG	1 cut(s)	556
SaqAI	TTAA	1 cut(s)	444
SatI	GCNGC	6 cut(s)	562, 649, 652, 694, 702, 710
Sau3AI	GATC	3 cut(s)	58, 330, 543
Sau96I	GGNCC	6 cut(s)	4, 151, 193, 389, 451, 556
ScaI	AGTACT	1 cut(s)	676
ScrFI	CCNGG	4 cut(s)	149, 292, 450, 585
SduI	GDGCHC	3 cut(s)	248, 302, 591
SetI	ASST	5 cut(s)	109, 260, 326, 468, 485
SfaAI	GCGATCGC	1 cut(s)	546
SgfI	GCGATCGC	1 cut(s)	546
SinI	GGWCC	5 cut(s)	4, 151, 193, 389, 556
SmiMI	CAYNNNNRTG	2 cut(s)	314, 317
SsiI	CCGC	6 cut(s)	101, 276, 437, 559, 562, 651
SspMI	CTAG	1 cut(s)	434
StyD4I	CCNGG	4 cut(s)	147, 290, 448, 583
TaaI	ACNGT	2 cut(s)	380, 575
TaiI	ACGT	1 cut(s)	326
TatI	WGTACW	2 cut(s)	405, 674
TauI	GCSGC	2 cut(s)	564, 654
TfiI	GAWTC	2 cut(s)	27, 639
Tru1I	TTAA	1 cut(s)	444
Tru9I	TTAA	1 cut(s)	444
TseFI	GTSAC	3 cut(s)	307, 418, 565
TseI	GCWGC	4 cut(s)	648, 693, 701, 709
Tsp45I	GTSAC	3 cut(s)	307, 418, 565
TspDTI	ATGAA	3 cut(s)	105, 500, 621
TspGWI	ACGGA	4 cut(s)	374, 389, 514, 584
Tth111I	GACNNNGTC	1 cut(s)	20
VneI	GTGCAC	1 cut(s)	298
VpaK11BI	GGWCC	5 cut(s)	4, 151, 193, 389, 556
XceI	RCATGY	1 cut(s)	343
XmiI	GTMKAC	1 cut(s)	51
XmnI	GAANNNNTTC	1 cut(s)	267
XspI	CTAG	1 cut(s)	434
ZrmI	AGTACT	1 cut(s)	676

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.