Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008555

Physical Location & Seq

Genomic Coordinates Forward (+)

3015237 .. 3018542

Gene Structure 3306 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G09340.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGGCGAAGATGATGATGTTGCAACAGCATCAGCCTTCTTTCTCTCTCCTTACTTCTTCTCTGTCTGACTTCAATGGCGCTAAGCTCCATTTACAAGTCCAGTACAAGAGGAAGGTTCATCAGCCAAAAGGAGCACTCTATGTTTCAGCGTCGAGCGAAAAGAAGATTCTGATAATGGGTGGTACTCGATTCATTGGTCTGTTCTTGTCCAGGATCCTTGTCAAAGAGGGACATCAGGTTACATTGTTCACAAGGGGTAAATCTCCTATTGCCAAACAATTGCCCGGTGAATCTGACCAAGACTTTGCTGATTTCTCTTCTAAGATTCTTCACTTGAAAGGAGACAGAAAGGACTATGACTTTGTGAAGTCAAGTCTTTCAGCAGAAGGCTTCGATGTTGTTTATGATATCAACGGGAGGGAGGCCGAAGAAGTTGAGCCCATACTAGAAGCACTACCCAAACTAGAGCAGTACATCTACTGTTCTTCAGCTGGTGTTTATCTGAAATCTGATATCTTGCCACATTGTGAGGAGGATGCAGTTGATCCGAAGAGCAGGCACAAGGGGAAGCTGGAGACTGAGAGCTTACTGCAATCAAAAGGTGTAAACTGGACTTCTATACGTCCTGTCTACATCTACGGTCCATTGAATTACAACCCCGTCGAAGAATGGTTTTTCCACCGTCTAAAGGCAGGTCGCCCAATCCCGGTTCCAAACTCTGGGATACAGATCTCACAACTCGGTCACGTTAAGGACTTGGCAACAGCCTTTCTCAACGTGCTTGGTAACGAGAAAGCCAGCAGAGAGATATTCAACATCTCGGGGGAGAAATATGTTACCTTTGATGGGTTAGCAAAAGCTTGCGCAAAGGCCGGTGGGTTTCCGGAGCCAGAGATTGTTCATTACAACCCGAAAGAGTTCGACTTTGGGAAGAAGAAGGCATTCCCTTTCCGTGATCAGCATTTCTTTGCATCGGTGGAGAAAGCAAAGCATGTCCTCGGATGGAAACCGGAGTTCGACTTAGTGGAGGGTCTCACTGACTCATACAACCTTGATTTCGGTCGCGGAACATTCCGGAAAGAAGCGGATTTCACCACTGACGACATGATTCTGAGCAAGAAACTTGTTCTTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000427 GO:0000428 GO:0001101 GO:0001871 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005777 GO:0005840 GO:0005911 GO:0005975 GO:0005996 GO:0006139 GO:0006355 GO:0006364 GO:0006396 GO:0006412 GO:0006417 GO:0006518 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0007154 GO:0007623 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009628 GO:0009657 GO:0009658 GO:0009889 GO:0009891 GO:0009893 GO:0009941 GO:0009987 GO:0009991 GO:0010035 GO:0010287 GO:0010297 GO:0010319 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0016020 GO:0016043 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0019538 GO:0022613 GO:0030054 GO:0030246 GO:0030247 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031668 GO:0031967 GO:0031975 GO:0032268 GO:0032270 GO:0032544 GO:0032991 GO:0033554 GO:0034248 GO:0034250 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0042254 GO:0042579 GO:0042631 GO:0042742 GO:0043043 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045727 GO:0045893 GO:0045935 GO:0046483 GO:0048046 GO:0048511 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0060255 GO:0061695 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0098542 GO:0104004 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901700 GO:1901701 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:1990904 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase

Protein Analysis

378

Amino Acids

42.62

Weight (kDa)

8.19

Isoelectric Point (pI)

39.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Epimerase	PF01370	57 - 274	9.2e-16	NAD dependent epimerase/dehydratase family
NAD_binding_10	PF13460	61 - 213	1.6e-06	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008555)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09340 AT1G09340
fragaria_vesca	FvH4_6g07910 FvH4_6g07910 FvH4_6g07910
malus_domestica	MD04G1191000.v1.1 MD12G1203600.v1.1
prunus_persica	Prupe.6G309500_v2.0.a1
pyrus_communis	pycom12g19030
rosa_chinensis	RchiOBHm_Chr3g0457611
rosa_laevigata	RLG00000025204 RLG00000025205
rosa_multiflora	Rmu_sc0005321.1_g000007 Rmu_sc0005321.1_g000009 Rmu_sc0007395.1_g000009 Rmu_sc0007395.1_g000012
rosa_roxburghii	Rroxscaffold_6G00421680
rosa_rugosa	Rorug03G0022100.1
rosa_samantha	Rh3BG084800 Rh3CG085000 Rh3DG086200 Rh3DG086300
rosa_wichuraiana	Rw3G007090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	865
Acc36I	ACCTGC	1 cut(s)	683
AccB7I	CCANNNNNTGG	1 cut(s)	719
AccI	GTMKAC	1 cut(s)	630
AccII	CGCG	1 cut(s)	1065
AccIII	TCCGGA	2 cut(s)	883, 1074
AciI	CCGC	2 cut(s)	1065, 1085
AclWI	GGATC	3 cut(s)	208, 221, 539
AcuI	CTGAAG	1 cut(s)	471
AdeI	CACNNNGTG	1 cut(s)	527
AfaI	GTAC	3 cut(s)	104, 184, 473
AfiI	CCNNNNNNNGG	4 cut(s)	688, 706, 719, 846
AgsI	TTSAA	5 cut(s)	73, 337, 649, 814, 1133
AjnI	CCWGG	1 cut(s)	209
AluBI	AGCT	5 cut(s)	85, 491, 571, 585, 860
AluI	AGCT	5 cut(s)	85, 491, 571, 585, 860
Alw21I	GWGCWC	1 cut(s)	136
Alw26I	GTCTC	3 cut(s)	336, 569, 1037
AlwI	GGATC	3 cut(s)	208, 221, 539
Ama87I	CYCGRG	1 cut(s)	820
Aor13HI	TCCGGA	2 cut(s)	883, 1074
AoxI	GGCC	2 cut(s)	423, 870
ArsI	GACNNNNNNTTYG	4 cut(s)	287, 319, 344, 376
Asp700I	GAANNNNTTC	2 cut(s)	917, 941
AspLEI	GCGC	2 cut(s)	80, 866
AspS9I	GGNCC	1 cut(s)	641
AsuC2I	CCSGG	2 cut(s)	285, 707
AsuHPI	GGTGA	2 cut(s)	299, 1084
AvaI	CYCGRG	1 cut(s)	820
AvaII	GGWCC	1 cut(s)	641
BamHI	GGATCC	1 cut(s)	213
BanII	GRGCYC	1 cut(s)	441
Bbv12I	GWGCWC	1 cut(s)	136
BccI	CCATC	2 cut(s)	839, 996
BciT130I	CCWGG	1 cut(s)	211
BciVI	GTATCC	1 cut(s)	717
BclI	TGATCA	1 cut(s)	955
BcnI	CCSGG	2 cut(s)	285, 707
BcoDI	GTCTC	3 cut(s)	336, 569, 1037
BfaI	CTAG	2 cut(s)	446, 464
BfoI	RGCGCY	1 cut(s)	81
BfuAI	ACCTGC	1 cut(s)	683
BfuI	GTATCC	1 cut(s)	717
BglII	AGATCT	1 cut(s)	729
BlpI	GCTNAGC	1 cut(s)	81
Bme1390I	CCNGG	3 cut(s)	211, 285, 707
Bme18I	GGWCC	1 cut(s)	641
BmeT110I	CYCGRG	1 cut(s)	820
BmgT120I	GGNCC	1 cut(s)	641
BmiI	GGNNCC	3 cut(s)	215, 711, 888
BmrFI	CCNGG	3 cut(s)	211, 285, 707
BmsI	GCATC	3 cut(s)	37, 526, 980
BpmI	CTGGAG	1 cut(s)	593
Bpu1102I	GCTNAGC	1 cut(s)	81
BpuMI	CCSGG	2 cut(s)	285, 707
BsaBI	GATNNNNATC	1 cut(s)	728
BsaI	GGTCTC	1 cut(s)	1037
BsaJI	CCNNGG	1 cut(s)	997
BsaWI	WCCGGW	3 cut(s)	883, 1009, 1074
Bsc4I	CCNNNNNNNGG	4 cut(s)	688, 706, 719, 846
Bse118I	RCCGGY	1 cut(s)	872
Bse1I	ACTGG	2 cut(s)	100, 614
Bse8I	GATNNNNATC	1 cut(s)	728
BseAI	TCCGGA	2 cut(s)	883, 1074
BseBI	CCWGG	1 cut(s)	211
BseDI	CCNNGG	1 cut(s)	997
BseGI	GGATG	2 cut(s)	541, 1007
BseJI	GATNNNNATC	1 cut(s)	728
BseLI	CCNNNNNNNGG	4 cut(s)	688, 706, 719, 846
BseMII	CTCAG	2 cut(s)	570, 1103
BseNI	ACTGG	2 cut(s)	100, 614
BseRI	GAGGAG	1 cut(s)	545
Bsh1236I	CGCG	1 cut(s)	1065
Bsh1285I	CGRYCG	1 cut(s)	1063
BshFI	GGCC	2 cut(s)	425, 872
BsiEI	CGRYCG	1 cut(s)	1063
BsiHKAI	GWGCWC	1 cut(s)	136
BsiHKCI	CYCGRG	1 cut(s)	820
BsiSI	CCGG	6 cut(s)	285, 707, 873, 884, 1010, 1075
BslFI	GGGAC	1 cut(s)	243
BslI	CCNNNNNNNGG	4 cut(s)	688, 706, 719, 846
BsmAI	GTCTC	3 cut(s)	336, 569, 1037
BsmFI	GGGAC	1 cut(s)	243
BsmI	GAATGC	1 cut(s)	941
BsnI	GGCC	2 cut(s)	425, 872
Bso31I	GGTCTC	1 cut(s)	1037
BsoBI	CYCGRG	1 cut(s)	820
Bsp1286I	GDGCHC	2 cut(s)	136, 441
Bsp13I	TCCGGA	2 cut(s)	883, 1074
Bsp143I	GATC	4 cut(s)	213, 544, 729, 955
Bsp1720I	GCTNAGC	1 cut(s)	81
BspACI	CCGC	2 cut(s)	1065, 1085
BspANI	GGCC	2 cut(s)	425, 872
BspCNI	CTCAG	2 cut(s)	571, 1104
BspEI	TCCGGA	2 cut(s)	883, 1074
BspFNI	CGCG	1 cut(s)	1065
BspLI	GGNNCC	3 cut(s)	215, 711, 888
BspMI	ACCTGC	1 cut(s)	683
BspPI	GGATC	3 cut(s)	208, 221, 539
BspQI	GCTCTTC	1 cut(s)	545
BspTNI	GGTCTC	1 cut(s)	1037
BsrFI	RCCGGY	1 cut(s)	872
BsrI	ACTGG	2 cut(s)	100, 614
BssAI	RCCGGY	1 cut(s)	872
BssECI	CCNNGG	1 cut(s)	997
BssMI	GATC	4 cut(s)	213, 544, 729, 955
Bst2UI	CCWGG	1 cut(s)	211
Bst4CI	ACNGT	3 cut(s)	482, 641, 683
Bst6I	CTCTTC	2 cut(s)	322, 545
BstC8I	GCNNGC	3 cut(s)	557, 799, 862
BstDEI	CTNAG	5 cut(s)	81, 321, 579, 1021, 1112
BstF5I	GGATG	2 cut(s)	541, 1007
BstFNI	CGCG	1 cut(s)	1065
BstH2I	RGCGCY	1 cut(s)	81
BstHHI	GCGC	2 cut(s)	80, 866
BstKTI	GATC	4 cut(s)	216, 547, 732, 958
BstMAI	GTCTC	3 cut(s)	336, 569, 1037
BstMBI	GATC	4 cut(s)	213, 544, 729, 955
BstMCI	CGRYCG	1 cut(s)	1063
BstNI	CCWGG	1 cut(s)	211
BstNSI	RCATGY	1 cut(s)	995
BstSCI	CCNGG	3 cut(s)	209, 283, 705
BstUI	CGCG	1 cut(s)	1065
BstX2I	RGATCY	2 cut(s)	213, 729
BstYI	RGATCY	2 cut(s)	213, 729
BsuI	GTATCC	1 cut(s)	717
BsuRI	GGCC	2 cut(s)	425, 872
BtsCI	GGATG	2 cut(s)	541, 1007
BtsIMutI	CAGTG	2 cut(s)	1035, 1095
BveI	ACCTGC	1 cut(s)	683
Cac8I	GCNNGC	3 cut(s)	557, 799, 862
CfoI	GCGC	2 cut(s)	80, 866
Cfr10I	RCCGGY	1 cut(s)	872
Cfr13I	GGNCC	1 cut(s)	641
CseI	GACGC	1 cut(s)	138
Csp6I	GTAC	3 cut(s)	103, 183, 472
CviAII	CATG	2 cut(s)	992, 1105
CviQI	GTAC	3 cut(s)	103, 183, 472
DdeI	CTNAG	5 cut(s)	81, 321, 579, 1021, 1112
DpnI	GATC	4 cut(s)	215, 546, 731, 957
DpnII	GATC	4 cut(s)	213, 544, 729, 955
DraIII	CACNNNGTG	1 cut(s)	527
Eam1104I	CTCTTC	2 cut(s)	322, 545
EarI	CTCTTC	2 cut(s)	322, 545
Eco24I	GRGCYC	1 cut(s)	441
Eco31I	GGTCTC	1 cut(s)	1037
Eco32I	GATATC	2 cut(s)	409, 514
Eco47I	GGWCC	1 cut(s)	641
Eco57I	CTGAAG	1 cut(s)	471
Eco88I	CYCGRG	1 cut(s)	820
EcoRII	CCWGG	1 cut(s)	209
EcoRV	GATATC	2 cut(s)	409, 514
EcoT38I	GRGCYC	1 cut(s)	441
FaeI	CATG	2 cut(s)	995, 1108
FaiI	YATR	9 cut(s)	141, 357, 405, 443, 620, 834, 993, 1045, 1106
FaqI	GGGAC	1 cut(s)	243
FatI	CATG	2 cut(s)	991, 1104
FbaI	TGATCA	1 cut(s)	955
FblI	GTMKAC	1 cut(s)	630
FokI	GGATG	2 cut(s)	548, 1014
FriOI	GRGCYC	1 cut(s)	441
FspBI	CTAG	2 cut(s)	446, 464
FspI	TGCGCA	1 cut(s)	865
GlaI	GCGC	2 cut(s)	79, 865
GsuI	CTGGAG	1 cut(s)	593
HaeII	RGCGCY	1 cut(s)	81
HaeIII	GGCC	2 cut(s)	425, 872
HapII	CCGG	6 cut(s)	285, 707, 873, 884, 1010, 1075
HgaI	GACGC	1 cut(s)	138
HhaI	GCGC	2 cut(s)	80, 866
Hin1II	CATG	2 cut(s)	995, 1108
Hin6I	GCGC	2 cut(s)	78, 864
HinP1I	GCGC	2 cut(s)	78, 864
HindIII	AAGCTT	1 cut(s)	858
HinfI	GANTC	6 cut(s)	166, 189, 290, 325, 1040, 1108
HpaII	CCGG	6 cut(s)	285, 707, 873, 884, 1010, 1075
HphI	GGTGA	2 cut(s)	299, 1084
Hpy166II	GTNNAC	3 cut(s)	249, 607, 631
Hpy188I	TCNGA	8 cut(s)	67, 171, 295, 504, 511, 549, 1001, 1113
Hpy188III	TCNNGA	2 cut(s)	884, 1075
Hpy8I	GTNNAC	3 cut(s)	249, 607, 631
Hpy99I	CGWCG	2 cut(s)	154, 665
HpyAV	CCTTC	4 cut(s)	45, 106, 380, 931
HpyCH4III	ACNGT	3 cut(s)	482, 641, 683
HpyCH4IV	ACGT	3 cut(s)	622, 747, 777
HpyCH4V	TGCA	4 cut(s)	22, 539, 592, 971
HpyF3I	CTNAG	5 cut(s)	81, 321, 579, 1021, 1112
HpySE526I	ACGT	3 cut(s)	622, 747, 777
Hsp92II	CATG	2 cut(s)	995, 1108
HspAI	GCGC	2 cut(s)	78, 864
Kpn2I	TCCGGA	2 cut(s)	883, 1074
Ksp22I	TGATCA	1 cut(s)	955
Kzo9I	GATC	4 cut(s)	213, 544, 729, 955
LguI	GCTCTTC	1 cut(s)	545
LmnI	GCTCC	3 cut(s)	90, 131, 886
LweI	GCATC	3 cut(s)	37, 526, 980
MaeI	CTAG	2 cut(s)	446, 464
MaeII	ACGT	3 cut(s)	622, 747, 777
MaeIII	GTNAC	4 cut(s)	238, 743, 785, 835
MalI	GATC	4 cut(s)	215, 546, 731, 957
MboI	GATC	4 cut(s)	213, 544, 729, 955
MfeI	CAATTG	1 cut(s)	278
MflI	RGATCY	2 cut(s)	213, 729
MhlI	GDGCHC	2 cut(s)	136, 441
MluCI	AATT	2 cut(s)	278, 649
MlyI	GAGTC	1 cut(s)	1034
MnlI	CCTC	8 cut(s)	102, 220, 411, 415, 523, 526, 1007, 1021
MroI	TCCGGA	2 cut(s)	883, 1074
MroXI	GAANNNNTTC	2 cut(s)	917, 941
MseI	TTAA	1 cut(s)	750
MspA1I	CMGCKG	1 cut(s)	491
MspI	CCGG	6 cut(s)	285, 707, 873, 884, 1010, 1075
MspR9I	CCNGG	3 cut(s)	211, 285, 707
MunI	CAATTG	1 cut(s)	278
Mva1269I	GAATGC	1 cut(s)	941
MvaI	CCWGG	1 cut(s)	211
MvnI	CGCG	1 cut(s)	1065
NciI	CCSGG	2 cut(s)	285, 707
NdeII	GATC	4 cut(s)	213, 544, 729, 955
NlaIII	CATG	2 cut(s)	995, 1108
NlaIV	GGNNCC	3 cut(s)	215, 711, 888
NmuCI	GTSAC	1 cut(s)	743
NsbI	TGCGCA	1 cut(s)	865
NspI	RCATGY	1 cut(s)	995
PciSI	GCTCTTC	1 cut(s)	545
PctI	GAATGC	1 cut(s)	941
PdmI	GAANNNNTTC	2 cut(s)	917, 941
PfeI	GAWTC	5 cut(s)	166, 189, 290, 325, 1108
PflMI	CCANNNNNTGG	1 cut(s)	719
PfoI	TCCNGGA	1 cut(s)	209
PleI	GAGTC	1 cut(s)	1034
PpsI	GAGTC	1 cut(s)	1034
Psp6I	CCWGG	1 cut(s)	209
PspGI	CCWGG	1 cut(s)	209
PspN4I	GGNNCC	3 cut(s)	215, 711, 888
PspPI	GGNCC	1 cut(s)	641
PsuI	RGATCY	2 cut(s)	213, 729
PvuII	CAGCTG	1 cut(s)	491
RsaI	GTAC	3 cut(s)	104, 184, 473
RsaNI	GTAC	3 cut(s)	103, 183, 472
SapI	GCTCTTC	1 cut(s)	545
SaqAI	TTAA	1 cut(s)	750
Sau3AI	GATC	4 cut(s)	213, 544, 729, 955
Sau96I	GGNCC	1 cut(s)	641
SchI	GAGTC	1 cut(s)	1034
ScrFI	CCNGG	3 cut(s)	211, 285, 707
SduI	GDGCHC	2 cut(s)	136, 441
SfaNI	GCATC	3 cut(s)	37, 526, 980
SinI	GGWCC	1 cut(s)	641
Sse9I	AATT	2 cut(s)	278, 649
SsiI	CCGC	2 cut(s)	1065, 1085
SspMI	CTAG	2 cut(s)	446, 464
StyD4I	CCNGG	3 cut(s)	209, 283, 705
TaaI	ACNGT	3 cut(s)	482, 641, 683
TaiI	ACGT	3 cut(s)	625, 750, 780
TaqI	TCGA	6 cut(s)	152, 187, 393, 663, 921, 1017
TaqII	GACCGA	2 cut(s)	731, 1049
TasI	AATT	2 cut(s)	278, 649
TatI	WGTACW	2 cut(s)	102, 471
TfiI	GAWTC	5 cut(s)	166, 189, 290, 325, 1108
Tru1I	TTAA	1 cut(s)	750
Tru9I	TTAA	1 cut(s)	750
TscAI	CASTG	2 cut(s)	1042, 1102
TseFI	GTSAC	1 cut(s)	743
Tsp45I	GTSAC	1 cut(s)	743
TspDTI	ATGAA	3 cut(s)	107, 181, 890
TspGWI	ACGGA	1 cut(s)	941
TspRI	CASTG	2 cut(s)	1042, 1102
Van91I	CCANNNNNTGG	1 cut(s)	719
VpaK11BI	GGWCC	1 cut(s)	641
XceI	RCATGY	1 cut(s)	995
XmiI	GTMKAC	1 cut(s)	630
XmnI	GAANNNNTTC	2 cut(s)	917, 941
XspI	CTAG	2 cut(s)	446, 464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.