Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0008555

Physical Location & Seq

Genomic Coordinates Forward (+)

4708406 .. 4711889

Gene Structure 3484 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g07910.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGGCGAAATTGGTGTCTGTTCAGAGACACCCTTCTGTCTCTCTCCTCCCTCCTTCTTCTCTCTCCGACTTCAATGGCACCAGGCTACTCCACTCTCATCTCCAGTTTAAGAGAAGGGTTTCGCAGCCAAGAGGTGCATTGCAAGTTTCGGCATCGAGTGCGAAGAAGATTCTGATAATGGGGGGAACTAGATTCATTGGTATCTTCTTGTCAAGGCTGCTTGTCAAGGAGGGTCATCAGGTTACATTGTTTACCAGAGGAAAAGCACCCATTACTCAGCAGTTGCCTGGTGAATCCGATAGTGACTACACAGATTTTGCTTCCAAGATTTTGCATTTGAAAGGAGACAGAAAGGACTTTGATTTTGTGAAGTCCAGTCTTTCAGCTGAAGGCTTTGATGTTGTTTACGACATAAACGGACGAGAGGCAGAGGAGATTGTGCCCATATTGGATGGACTTCCGAAGTTAGAACAGTACATATACTGCTCTTCAGCTGGTGTTTATCTGAAATCTGATCAATTACCTCACTTTGAGATCGATGCAGTTGATCCAAAGAGCAGGCACAAGGGAAAGCTTGAGACAGAGAGCTTGCTTGAATCAAGGGGTGTCAATTGGACTTCTATAAGGCCAGTCTACATCTATGGACCACTGAACTACAATCCTGTTGAAGAGTGGTTCTTCCACCGGTTGAAAGCTGGCCGCCCAATTCCAGTTCCAAACTCGGGAATACAAATAACACAACTTGGTCATGTTAAGGATTTAGCGACTGCATTTGTTAAGGTTCTTTGTAATGAAAAGGCCAGCAAGGAAGTATTCAACATCTCTGGAGAAAAATATGTCACCTTTGATGGATTAGCAAAAGCATGTGCAAAGGCTGCTGGGTTTCCTGAGCCTGAGATCGTTCACTATAACCCTAAGGAGTTTGATTTTGGCAAGAAGAAGGCATTTCCATTTCGCGACCAGCATTTCTTTGCATCGATTGACAAAGCAAAGAGCGTGCTTGGGTGGAAACCCGAATATGACTTGGTCGAAGGTCTTGCAGACTCCTACAACCTAGACTTTGGCAGAGGAACATTCAGGAAAGAAGCTGATTTTTCAACAGATGACATGATTCTTGGCAAGAGTCTGGTTCTCCAAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000427 GO:0000428 GO:0001101 GO:0001871 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005777 GO:0005840 GO:0005911 GO:0005975 GO:0005996 GO:0006139 GO:0006355 GO:0006364 GO:0006396 GO:0006412 GO:0006417 GO:0006518 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0007154 GO:0007623 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009628 GO:0009657 GO:0009658 GO:0009889 GO:0009891 GO:0009893 GO:0009941 GO:0009987 GO:0009991 GO:0010035 GO:0010287 GO:0010297 GO:0010319 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0016020 GO:0016043 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0019538 GO:0022613 GO:0030054 GO:0030246 GO:0030247 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031668 GO:0031967 GO:0031975 GO:0032268 GO:0032270 GO:0032544 GO:0032991 GO:0033554 GO:0034248 GO:0034250 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0042254 GO:0042579 GO:0042631 GO:0042742 GO:0043043 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045727 GO:0045893 GO:0045935 GO:0046483 GO:0048046 GO:0048511 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0060255 GO:0061695 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0098542 GO:0104004 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901700 GO:1901701 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:1990904 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase

Protein Analysis

381

Amino Acids

42.51

Weight (kDa)

8.69

Isoelectric Point (pI)

34.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Epimerase	PF01370	57 - 274	4.9e-15	NAD dependent epimerase/dehydratase family
NAD_binding_10	PF13460	61 - 213	2.1e-06	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008555)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09340 AT1G09340
fragaria_vesca	FvH4_6g07910 FvH4_6g07910 FvH4_6g07910
malus_domestica	MD04G1191000.v1.1 MD12G1203600.v1.1
prunus_persica	Prupe.6G309500_v2.0.a1
pyrus_communis	pycom12g19030
rosa_chinensis	RchiOBHm_Chr3g0457611
rosa_laevigata	RLG00000025204 RLG00000025205
rosa_multiflora	Rmu_sc0005321.1_g000007 Rmu_sc0005321.1_g000009 Rmu_sc0007395.1_g000009 Rmu_sc0007395.1_g000012
rosa_roxburghii	Rroxscaffold_6G00421680
rosa_rugosa	Rorug03G0022100.1
rosa_samantha	Rh3BG084800 Rh3CG085000 Rh3DG086200 Rh3DG086300
rosa_wichuraiana	Rw3G007090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	77
AccI	GTMKAC	1 cut(s)	633
AccII	CGCG	1 cut(s)	957
AciI	CCGC	1 cut(s)	700
AclWI	GGATC	1 cut(s)	542
AcoI	YGGCCR	1 cut(s)	697
AcuI	CTGAAG	2 cut(s)	408, 474
AfaI	GTAC	1 cut(s)	476
AfiI	CCNNNNNNNGG	1 cut(s)	722
AgeI	ACCGGT	1 cut(s)	684
AgsI	TTSAA	7 cut(s)	73, 340, 596, 668, 691, 817, 1098
AjnI	CCWGG	2 cut(s)	80, 286
AluBI	AGCT	7 cut(s)	386, 494, 574, 588, 695, 1088, 1140
AluI	AGCT	7 cut(s)	386, 494, 574, 588, 695, 1088, 1140
Alw26I	GTCTC	4 cut(s)	19, 43, 339, 572
AlwI	GGATC	1 cut(s)	542
Ama87I	CYCGRG	1 cut(s)	721
AoxI	GGCC	3 cut(s)	626, 697, 798
ApeKI	GCWGC	3 cut(s)	124, 217, 875
ArsI	GACNNNNNNTTYG	3 cut(s)	31, 347, 379
AsiGI	ACCGGT	1 cut(s)	684
Asp700I	GAANNNNTTC	1 cut(s)	118
AspS9I	GGNCC	1 cut(s)	644
AsuHPI	GGTGA	2 cut(s)	302, 832
AvaI	CYCGRG	1 cut(s)	721
AvaII	GGWCC	1 cut(s)	644
AxyI	CCTNAGG	1 cut(s)	915
BaeGI	GKGCMC	1 cut(s)	444
BanI	GGYRCC	1 cut(s)	77
BbvI	GCAGC	3 cut(s)	136, 204, 862
BccI	CCATC	2 cut(s)	446, 842
BcgI	CGANNNNNNTGC	2 cut(s)	1019, 1053
BciT130I	CCWGG	2 cut(s)	82, 288
BclI	TGATCA	1 cut(s)	514
BcoDI	GTCTC	4 cut(s)	19, 43, 339, 572
BfaI	CTAG	3 cut(s)	189, 1055, 1141
BisI	GCNGC	4 cut(s)	125, 218, 700, 876
BlsI	GCNGC	4 cut(s)	126, 219, 701, 877
Bme1390I	CCNGG	2 cut(s)	82, 288
Bme18I	GGWCC	1 cut(s)	644
BmeT110I	CYCGRG	1 cut(s)	721
BmgT120I	GGNCC	1 cut(s)	644
BmiI	GGNNCC	1 cut(s)	79
BmrFI	CCNGG	2 cut(s)	82, 288
BmsI	GCATC	3 cut(s)	161, 529, 983
BpmI	CTGGAG	2 cut(s)	86, 846
Bpu10I	CCTNAGC	1 cut(s)	888
BpuEI	CTTGAG	1 cut(s)	596
Bsa29I	ATCGAT	2 cut(s)	537, 977
BsaWI	WCCGGW	1 cut(s)	684
Bsc4I	CCNNNNNNNGG	1 cut(s)	722
Bse118I	RCCGGY	1 cut(s)	684
Bse1I	ACTGG	4 cut(s)	103, 375, 629, 710
Bse21I	CCTNAGG	1 cut(s)	915
Bse3DI	GCAATG	1 cut(s)	137
BseBI	CCWGG	2 cut(s)	82, 288
BseCI	ATCGAT	2 cut(s)	537, 977
BseGI	GGATG	1 cut(s)	457
BseLI	CCNNNNNNNGG	1 cut(s)	722
BseMI	GCAATG	1 cut(s)	137
BseMII	CTCAG	3 cut(s)	290, 879, 885
BseNI	ACTGG	4 cut(s)	103, 375, 629, 710
BseRI	GAGGAG	2 cut(s)	35, 446
BseSI	GKGCMC	1 cut(s)	444
BseXI	GCAGC	3 cut(s)	136, 204, 862
BseYI	CCCAGC	1 cut(s)	878
Bsh1236I	CGCG	1 cut(s)	957
BshFI	GGCC	3 cut(s)	628, 699, 800
BshNI	GGYRCC	1 cut(s)	77
BshTI	ACCGGT	1 cut(s)	684
BshVI	ATCGAT	2 cut(s)	537, 977
BsiHKCI	CYCGRG	1 cut(s)	721
BsiSI	CCGG	1 cut(s)	685
BslI	CCNNNNNNNGG	1 cut(s)	722
BsmAI	GTCTC	4 cut(s)	19, 43, 339, 572
BsnI	GGCC	3 cut(s)	628, 699, 800
BsoBI	CYCGRG	1 cut(s)	721
Bsp1286I	GDGCHC	1 cut(s)	444
Bsp143I	GATC	4 cut(s)	514, 534, 547, 897
Bsp68I	TCGCGA	1 cut(s)	957
BspACI	CCGC	1 cut(s)	700
BspANI	GGCC	3 cut(s)	628, 699, 800
BspCNI	CTCAG	3 cut(s)	289, 880, 886
BspDI	ATCGAT	2 cut(s)	537, 977
BspFNI	CGCG	1 cut(s)	957
BspLI	GGNNCC	1 cut(s)	79
BspPI	GGATC	1 cut(s)	542
BspQI	GCTCTTC	1 cut(s)	493
BspT107I	GGYRCC	1 cut(s)	77
BsrDI	GCAATG	1 cut(s)	137
BsrFI	RCCGGY	1 cut(s)	684
BsrI	ACTGG	4 cut(s)	103, 375, 629, 710
BssAI	RCCGGY	1 cut(s)	684
BssMI	GATC	4 cut(s)	514, 534, 547, 897
Bst2UI	CCWGG	2 cut(s)	82, 288
Bst4CI	ACNGT	1 cut(s)	474
Bst6I	CTCTTC	2 cut(s)	493, 663
BstAPI	GCANNNNNTGC	2 cut(s)	158, 875
BstC8I	GCNNGC	5 cut(s)	560, 590, 697, 802, 998
BstDEI	CTNAG	4 cut(s)	276, 888, 894, 915
BstF5I	GGATG	1 cut(s)	457
BstFNI	CGCG	1 cut(s)	957
BstKTI	GATC	4 cut(s)	517, 537, 550, 900
BstMAI	GTCTC	4 cut(s)	19, 43, 339, 572
BstMBI	GATC	4 cut(s)	514, 534, 547, 897
BstMWI	GCNNNNNNNGC	2 cut(s)	158, 875
BstNI	CCWGG	2 cut(s)	82, 288
BstNSI	RCATGY	1 cut(s)	867
BstSCI	CCNGG	2 cut(s)	80, 286
BstSLI	GKGCMC	1 cut(s)	444
BstUI	CGCG	1 cut(s)	957
BstV1I	GCAGC	3 cut(s)	136, 204, 862
Bsu15I	ATCGAT	2 cut(s)	537, 977
Bsu36I	CCTNAGG	1 cut(s)	915
BsuRI	GGCC	3 cut(s)	628, 699, 800
BsuTUI	ATCGAT	2 cut(s)	537, 977
BtsCI	GGATG	1 cut(s)	457
BtsIMutI	CAGTG	1 cut(s)	647
BtuMI	TCGCGA	1 cut(s)	957
Cac8I	GCNNGC	5 cut(s)	560, 590, 697, 802, 998
Cfr10I	RCCGGY	1 cut(s)	684
Cfr13I	GGNCC	1 cut(s)	644
ClaI	ATCGAT	2 cut(s)	537, 977
Csp6I	GTAC	1 cut(s)	475
CspAI	ACCGGT	1 cut(s)	684
CviAII	CATG	3 cut(s)	749, 864, 1108
CviQI	GTAC	1 cut(s)	475
DdeI	CTNAG	4 cut(s)	276, 888, 894, 915
DpnI	GATC	4 cut(s)	516, 536, 549, 899
DpnII	GATC	4 cut(s)	514, 534, 547, 897
EaeI	YGGCCR	1 cut(s)	697
Eam1104I	CTCTTC	2 cut(s)	493, 663
EarI	CTCTTC	2 cut(s)	493, 663
Eco47I	GGWCC	1 cut(s)	644
Eco57I	CTGAAG	2 cut(s)	408, 474
Eco81I	CCTNAGG	1 cut(s)	915
Eco88I	CYCGRG	1 cut(s)	721
EcoRII	CCWGG	2 cut(s)	80, 286
FaeI	CATG	3 cut(s)	752, 867, 1111
FatI	CATG	3 cut(s)	748, 863, 1107
FbaI	TGATCA	1 cut(s)	514
FblI	GTMKAC	1 cut(s)	633
Fnu4HI	GCNGC	4 cut(s)	125, 218, 700, 876
FokI	GGATG	1 cut(s)	464
Fsp4HI	GCNGC	4 cut(s)	125, 218, 700, 876
FspBI	CTAG	3 cut(s)	189, 1055, 1141
GluI	GCNGC	4 cut(s)	125, 218, 700, 876
GsaI	CCCAGC	1 cut(s)	882
GsuI	CTGGAG	2 cut(s)	86, 846
HaeIII	GGCC	3 cut(s)	628, 699, 800
HapII	CCGG	1 cut(s)	685
Hin1II	CATG	3 cut(s)	752, 867, 1111
HindIII	AAGCTT	1 cut(s)	572
HinfI	GANTC	7 cut(s)	169, 192, 293, 596, 1043, 1111, 1123
HpaII	CCGG	1 cut(s)	685
HphI	GGTGA	2 cut(s)	302, 832
Hpy166II	GTNNAC	4 cut(s)	252, 406, 634, 904
Hpy188I	TCNGA	7 cut(s)	24, 67, 174, 298, 462, 507, 514
Hpy188III	TCNNGA	5 cut(s)	723, 825, 887, 956, 1078
Hpy8I	GTNNAC	4 cut(s)	252, 406, 634, 904
HpyAV	CCTTC	6 cut(s)	42, 63, 108, 383, 934, 1025
HpyCH4III	ACNGT	1 cut(s)	474
HpyCH4V	TGCA	8 cut(s)	137, 142, 334, 542, 770, 869, 974, 1040
HpyF10VI	GCNNNNNNNGC	2 cut(s)	158, 875
HpyF3I	CTNAG	4 cut(s)	276, 888, 894, 915
Hsp92II	CATG	3 cut(s)	752, 867, 1111
Ksp22I	TGATCA	1 cut(s)	514
Kzo9I	GATC	4 cut(s)	514, 534, 547, 897
LguI	GCTCTTC	1 cut(s)	493
Lsp1109I	GCAGC	3 cut(s)	136, 204, 862
LweI	GCATC	3 cut(s)	161, 529, 983
MaeI	CTAG	3 cut(s)	189, 1055, 1141
MaeIII	GTNAC	3 cut(s)	241, 302, 838
MalI	GATC	4 cut(s)	516, 536, 549, 899
MboI	GATC	4 cut(s)	514, 534, 547, 897
MboII	GAAGA	8 cut(s)	48, 175, 178, 196, 480, 670, 680, 949
MfeI	CAATTG	1 cut(s)	610
MhlI	GDGCHC	1 cut(s)	444
MluCI	AATT	4 cut(s)	8, 518, 610, 705
MlyI	GAGTC	2 cut(s)	1037, 1132
MmeI	TCCRAC	1 cut(s)	90
MnlI	CCTC	9 cut(s)	56, 60, 125, 223, 251, 418, 424, 534, 1061
MroXI	GAANNNNTTC	1 cut(s)	118
MseI	TTAA	3 cut(s)	108, 753, 777
MspA1I	CMGCKG	2 cut(s)	386, 494
MspI	CCGG	1 cut(s)	685
MspR9I	CCNGG	2 cut(s)	82, 288
MunI	CAATTG	1 cut(s)	610
MvaI	CCWGG	2 cut(s)	82, 288
MvnI	CGCG	1 cut(s)	957
MwoI	GCNNNNNNNGC	2 cut(s)	158, 875
NdeII	GATC	4 cut(s)	514, 534, 547, 897
NlaIII	CATG	3 cut(s)	752, 867, 1111
NlaIV	GGNNCC	1 cut(s)	79
NmuCI	GTSAC	2 cut(s)	302, 838
NruI	TCGCGA	1 cut(s)	957
NspI	RCATGY	1 cut(s)	867
PciSI	GCTCTTC	1 cut(s)	493
PdmI	GAANNNNTTC	1 cut(s)	118
PfeI	GAWTC	5 cut(s)	169, 192, 293, 596, 1111
PflFI	GACNNNGTC	1 cut(s)	1025
PinAI	ACCGGT	1 cut(s)	684
PkrI	GCNGC	4 cut(s)	126, 219, 701, 877
PleI	GAGTC	2 cut(s)	1037, 1131
PpsI	GAGTC	2 cut(s)	1037, 1131
Psp6I	CCWGG	2 cut(s)	80, 286
PspFI	CCCAGC	1 cut(s)	878
PspGI	CCWGG	2 cut(s)	80, 286
PspN4I	GGNNCC	1 cut(s)	79
PspPI	GGNCC	1 cut(s)	644
PsyI	GACNNNGTC	1 cut(s)	1025
PvuII	CAGCTG	2 cut(s)	386, 494
RruI	TCGCGA	1 cut(s)	957
RsaI	GTAC	1 cut(s)	476
RsaNI	GTAC	1 cut(s)	475
SapI	GCTCTTC	1 cut(s)	493
SaqAI	TTAA	3 cut(s)	108, 753, 777
SatI	GCNGC	4 cut(s)	125, 218, 700, 876
Sau3AI	GATC	4 cut(s)	514, 534, 547, 897
Sau96I	GGNCC	1 cut(s)	644
SchI	GAGTC	2 cut(s)	1037, 1132
ScrFI	CCNGG	2 cut(s)	82, 288
SduI	GDGCHC	1 cut(s)	444
SfaNI	GCATC	3 cut(s)	161, 529, 983
SinI	GGWCC	1 cut(s)	644
SmlI	CTYRAG	1 cut(s)	575
SmoI	CTYRAG	1 cut(s)	575
Sse9I	AATT	4 cut(s)	8, 518, 610, 705
SsiI	CCGC	1 cut(s)	700
SspMI	CTAG	3 cut(s)	189, 1055, 1141
StyD4I	CCNGG	2 cut(s)	80, 286
TaaI	ACNGT	1 cut(s)	474
TaqI	TCGA	4 cut(s)	155, 537, 977, 1029
TasI	AATT	4 cut(s)	8, 518, 610, 705
TatI	WGTACW	1 cut(s)	474
TauI	GCSGC	1 cut(s)	702
TfiI	GAWTC	5 cut(s)	169, 192, 293, 596, 1111
Tru1I	TTAA	3 cut(s)	108, 753, 777
Tru9I	TTAA	3 cut(s)	108, 753, 777
TscAI	CASTG	1 cut(s)	654
TseFI	GTSAC	2 cut(s)	302, 838
TseI	GCWGC	3 cut(s)	124, 217, 875
Tsp45I	GTSAC	2 cut(s)	302, 838
TspDTI	ATGAA	2 cut(s)	184, 807
TspGWI	ACGGA	1 cut(s)	432
TspRI	CASTG	1 cut(s)	654
Tth111I	GACNNNGTC	1 cut(s)	1025
VpaK11BI	GGWCC	1 cut(s)	644
XceI	RCATGY	1 cut(s)	867
XmiI	GTMKAC	1 cut(s)	633
XmnI	GAANNNNTTC	1 cut(s)	118
XspI	CTAG	3 cut(s)	189, 1055, 1141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.