Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0008555

Physical Location & Seq

Genomic Coordinates Reverse (-)

42806887 .. 42810084

Gene Structure 3198 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00421680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGGCGAAATTGGTGTCTGTACAGACACACCCTTCTTTCTCTCTCCTCCCTCCTTCTTCTCTCTCCGACTTCAATGGCACCAGGCTACTCCACTCTCAAGTCCAGTATAAGAGAAGGGTTTCACAGCCAAAAGGTGCATTGCAAGTTTCGGCTTCGAGTGCCAAGAAGATTCTCGTAATGGGTGGGACTAGATTCATTGGTCTCTTCTTGTCAAGGCTCCTTGTCAAGGAGGGTCATCAGGTGACTTTGTTTACCAGAGGAAAAGCACCCATCACTCAGCAGTTGCCAGGTGAATCGGATAGCGACTACACAGAGTTTGCTTCCAAGATTTTGCATTTGAAAGGGGACAGAAAGGACTTCGATTTTGTGAAGTCCAGTCTTTCAGCTGAAGGCTTTGATGTTGTTTATGACATAAACGGACGAGAGGCAGAGGAGATTGTGCCCATATTGGATGGACTTCCGAAGTTGGAACAGTACATATACTGCTCTTCAGCTGGTGTTTATCTCAAATCTGATCAACTGCCTCACTTTGAGACCGATGCAGTTGATCCAAAGAGCAGGCACAAGGGAAAGCTTGAGACAGAAAGCTTGCTCGAATCAAGGGGTGTAAATTGGACTTCTATAAGGCCAGTCTACATCTATGGACCGTTGAACTACAATCCTGTTGAAGAGTGGTTCTTCCACCGGTTGAAAGCTGGCCGCCCAATTCCAGTTCCAAACTCGGGAATACAGATAACACAACTCGGTCATGTTAAGGATTTAGCAACCGCATTTATTAAGGTTCTTGGTAATGAAAAGGCCAGTAAGGAAGTGTTCAACATCTCTGGAGAAAAATATGTCACCTTTGATGGATTAGCAAAAGCATGTGCAAAGGCTGCTGGATTTCCTGAGCCTGAGATTGTTCACTATAACCCTAAGGAGTTTGACTTTGGGAAGAAGAAGGCATTTCCATTTCGTGACCAGCATTTCTTTGCATCGATTGACAAAGCAAAGAGCGTTCTTGGGTGGAAACCCGAATATGGCCTGGTCGAAGGTCTTGCAGACTCTTACAACCTAGACTTTGGCAGAGGAACATTCAGGAAAGCAGCTGATTTTTCAACAGATGACATCATTCTTGGCAAAAGTCTTGTTCTCCAAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000427 GO:0000428 GO:0001101 GO:0001871 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005777 GO:0005840 GO:0005911 GO:0005975 GO:0005996 GO:0006139 GO:0006355 GO:0006364 GO:0006396 GO:0006412 GO:0006417 GO:0006518 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0007154 GO:0007623 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009628 GO:0009657 GO:0009658 GO:0009889 GO:0009891 GO:0009893 GO:0009941 GO:0009987 GO:0009991 GO:0010035 GO:0010287 GO:0010297 GO:0010319 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0016020 GO:0016043 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0019538 GO:0022613 GO:0030054 GO:0030246 GO:0030247 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031668 GO:0031967 GO:0031975 GO:0032268 GO:0032270 GO:0032544 GO:0032991 GO:0033554 GO:0034248 GO:0034250 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0042254 GO:0042579 GO:0042631 GO:0042742 GO:0043043 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045727 GO:0045893 GO:0045935 GO:0046483 GO:0048046 GO:0048511 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0060255 GO:0061695 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0098542 GO:0104004 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901700 GO:1901701 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:1990904 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase

Protein Analysis

380

Amino Acids

42.29

Weight (kDa)

8.87

Isoelectric Point (pI)

33.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Epimerase	PF01370	57 - 274	1.1e-15	NAD dependent epimerase/dehydratase family
NAD_binding_10	PF13460	61 - 213	9.3e-07	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008555)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09340 AT1G09340
fragaria_vesca	FvH4_6g07910 FvH4_6g07910 FvH4_6g07910
malus_domestica	MD04G1191000.v1.1 MD12G1203600.v1.1
prunus_persica	Prupe.6G309500_v2.0.a1
pyrus_communis	pycom12g19030
rosa_chinensis	RchiOBHm_Chr3g0457611
rosa_laevigata	RLG00000025204 RLG00000025205
rosa_multiflora	Rmu_sc0005321.1_g000007 Rmu_sc0005321.1_g000009 Rmu_sc0007395.1_g000009 Rmu_sc0007395.1_g000012
rosa_roxburghii	Rroxscaffold_6G00421680
rosa_rugosa	Rorug03G0022100.1
rosa_samantha	Rh3BG084800 Rh3CG085000 Rh3DG086200 Rh3DG086300
rosa_wichuraiana	Rw3G007090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	77
AccI	GTMKAC	1 cut(s)	633
AciI	CCGC	2 cut(s)	700, 768
AclWI	GGATC	1 cut(s)	542
AcoI	YGGCCR	1 cut(s)	697
AcuI	CTGAAG	2 cut(s)	408, 474
AfaI	GTAC	2 cut(s)	21, 476
AfiI	CCNNNNNNNGG	3 cut(s)	226, 722, 1019
AgeI	ACCGGT	1 cut(s)	684
AgsI	TTSAA	7 cut(s)	73, 340, 652, 668, 691, 817, 1098
AjnI	CCWGG	3 cut(s)	80, 286, 1023
AluBI	AGCT	7 cut(s)	386, 494, 574, 588, 695, 1088, 1140
AluI	AGCT	7 cut(s)	386, 494, 574, 588, 695, 1088, 1140
Alw26I	GTCTC	3 cut(s)	206, 527, 572
AlwI	GGATC	1 cut(s)	542
Ama87I	CYCGRG	1 cut(s)	721
AoxI	GGCC	4 cut(s)	626, 697, 798, 1021
ApeKI	GCWGC	2 cut(s)	875, 1085
ArsI	GACNNNNNNTTYG	3 cut(s)	31, 347, 379
AsiGI	ACCGGT	1 cut(s)	684
Asp700I	GAANNNNTTC	1 cut(s)	118
AspS9I	GGNCC	1 cut(s)	644
AsuHPI	GGTGA	3 cut(s)	253, 302, 832
AvaI	CYCGRG	1 cut(s)	721
AvaII	GGWCC	1 cut(s)	644
AxyI	CCTNAGG	1 cut(s)	915
BaeGI	GKGCMC	1 cut(s)	444
BanI	GGYRCC	1 cut(s)	77
BbvI	GCAGC	2 cut(s)	862, 1097
BccI	CCATC	3 cut(s)	278, 446, 842
BcgI	CGANNNNNNTGC	2 cut(s)	1019, 1053
BciT130I	CCWGG	3 cut(s)	82, 288, 1025
BclI	TGATCA	1 cut(s)	514
BcoDI	GTCTC	3 cut(s)	206, 527, 572
BfaI	CTAG	3 cut(s)	189, 1055, 1141
BisI	GCNGC	3 cut(s)	700, 876, 1086
BlsI	GCNGC	3 cut(s)	701, 877, 1087
Bme1390I	CCNGG	3 cut(s)	82, 288, 1025
Bme18I	GGWCC	1 cut(s)	644
BmeT110I	CYCGRG	1 cut(s)	721
BmgT120I	GGNCC	1 cut(s)	644
BmiI	GGNNCC	2 cut(s)	79, 218
BmrFI	CCNGG	3 cut(s)	82, 288, 1025
BmsI	GCATC	2 cut(s)	529, 983
BpmI	CTGGAG	1 cut(s)	846
Bpu10I	CCTNAGC	1 cut(s)	888
BpuEI	CTTGAG	2 cut(s)	81, 596
Bsa29I	ATCGAT	1 cut(s)	977
BsaI	GGTCTC	2 cut(s)	206, 527
BsaWI	WCCGGW	1 cut(s)	684
Bsc4I	CCNNNNNNNGG	3 cut(s)	226, 722, 1019
Bse118I	RCCGGY	1 cut(s)	684
Bse1I	ACTGG	5 cut(s)	103, 375, 629, 710, 801
Bse21I	CCTNAGG	1 cut(s)	915
Bse3DI	GCAATG	1 cut(s)	137
BseBI	CCWGG	3 cut(s)	82, 288, 1025
BseCI	ATCGAT	1 cut(s)	977
BseGI	GGATG	1 cut(s)	457
BseLI	CCNNNNNNNGG	3 cut(s)	226, 722, 1019
BseMI	GCAATG	1 cut(s)	137
BseMII	CTCAG	3 cut(s)	290, 879, 885
BseNI	ACTGG	5 cut(s)	103, 375, 629, 710, 801
BseRI	GAGGAG	2 cut(s)	35, 446
BseSI	GKGCMC	1 cut(s)	444
BseXI	GCAGC	2 cut(s)	862, 1097
BshFI	GGCC	4 cut(s)	628, 699, 800, 1023
BshNI	GGYRCC	1 cut(s)	77
BshTI	ACCGGT	1 cut(s)	684
BshVI	ATCGAT	1 cut(s)	977
BsiHKCI	CYCGRG	1 cut(s)	721
BsiSI	CCGG	1 cut(s)	685
BslFI	GGGAC	2 cut(s)	199, 359
BslI	CCNNNNNNNGG	3 cut(s)	226, 722, 1019
BsmAI	GTCTC	3 cut(s)	206, 527, 572
BsmFI	GGGAC	2 cut(s)	199, 359
BsnI	GGCC	4 cut(s)	628, 699, 800, 1023
Bso31I	GGTCTC	2 cut(s)	206, 527
BsoBI	CYCGRG	1 cut(s)	721
Bsp1286I	GDGCHC	1 cut(s)	444
Bsp1407I	TGTACA	1 cut(s)	19
Bsp143I	GATC	2 cut(s)	514, 547
BspACI	CCGC	2 cut(s)	700, 768
BspANI	GGCC	4 cut(s)	628, 699, 800, 1023
BspCNI	CTCAG	3 cut(s)	289, 880, 886
BspDI	ATCGAT	1 cut(s)	977
BspLI	GGNNCC	2 cut(s)	79, 218
BspPI	GGATC	1 cut(s)	542
BspQI	GCTCTTC	1 cut(s)	493
BspT107I	GGYRCC	1 cut(s)	77
BspTNI	GGTCTC	2 cut(s)	206, 527
BsrDI	GCAATG	1 cut(s)	137
BsrFI	RCCGGY	1 cut(s)	684
BsrGI	TGTACA	1 cut(s)	19
BsrI	ACTGG	5 cut(s)	103, 375, 629, 710, 801
BssAI	RCCGGY	1 cut(s)	684
BssMI	GATC	2 cut(s)	514, 547
Bst2UI	CCWGG	3 cut(s)	82, 288, 1025
Bst4CI	ACNGT	2 cut(s)	474, 648
Bst6I	CTCTTC	3 cut(s)	209, 493, 663
BstAPI	GCANNNNNTGC	1 cut(s)	875
BstAUI	TGTACA	1 cut(s)	19
BstC8I	GCNNGC	3 cut(s)	560, 590, 697
BstDEI	CTNAG	4 cut(s)	276, 888, 894, 915
BstENI	CCTNNNNNAGG	1 cut(s)	224
BstF5I	GGATG	1 cut(s)	457
BstKTI	GATC	2 cut(s)	517, 550
BstMAI	GTCTC	3 cut(s)	206, 527, 572
BstMBI	GATC	2 cut(s)	514, 547
BstMWI	GCNNNNNNNGC	2 cut(s)	158, 875
BstNI	CCWGG	3 cut(s)	82, 288, 1025
BstNSI	RCATGY	1 cut(s)	867
BstSCI	CCNGG	3 cut(s)	80, 286, 1023
BstSLI	GKGCMC	1 cut(s)	444
BstV1I	GCAGC	2 cut(s)	862, 1097
Bsu15I	ATCGAT	1 cut(s)	977
Bsu36I	CCTNAGG	1 cut(s)	915
BsuRI	GGCC	4 cut(s)	628, 699, 800, 1023
BsuTUI	ATCGAT	1 cut(s)	977
BtsCI	GGATG	1 cut(s)	457
Cac8I	GCNNGC	3 cut(s)	560, 590, 697
Cfr10I	RCCGGY	1 cut(s)	684
Cfr13I	GGNCC	1 cut(s)	644
ClaI	ATCGAT	1 cut(s)	977
Csp6I	GTAC	2 cut(s)	20, 475
CspAI	ACCGGT	1 cut(s)	684
CviAII	CATG	2 cut(s)	749, 864
CviQI	GTAC	2 cut(s)	20, 475
DdeI	CTNAG	4 cut(s)	276, 888, 894, 915
DpnI	GATC	2 cut(s)	516, 549
DpnII	GATC	2 cut(s)	514, 547
EaeI	YGGCCR	1 cut(s)	697
Eam1104I	CTCTTC	3 cut(s)	209, 493, 663
EarI	CTCTTC	3 cut(s)	209, 493, 663
Eco31I	GGTCTC	2 cut(s)	206, 527
Eco47I	GGWCC	1 cut(s)	644
Eco57I	CTGAAG	2 cut(s)	408, 474
Eco81I	CCTNAGG	1 cut(s)	915
Eco88I	CYCGRG	1 cut(s)	721
EcoNI	CCTNNNNNAGG	1 cut(s)	224
EcoRII	CCWGG	3 cut(s)	80, 286, 1023
FaeI	CATG	2 cut(s)	752, 867
FaqI	GGGAC	2 cut(s)	199, 359
FatI	CATG	2 cut(s)	748, 863
FbaI	TGATCA	1 cut(s)	514
FblI	GTMKAC	1 cut(s)	633
Fnu4HI	GCNGC	3 cut(s)	700, 876, 1086
FokI	GGATG	1 cut(s)	464
Fsp4HI	GCNGC	3 cut(s)	700, 876, 1086
FspBI	CTAG	3 cut(s)	189, 1055, 1141
GluI	GCNGC	3 cut(s)	700, 876, 1086
GsuI	CTGGAG	1 cut(s)	846
HaeIII	GGCC	4 cut(s)	628, 699, 800, 1023
HapII	CCGG	1 cut(s)	685
Hin1II	CATG	2 cut(s)	752, 867
HindIII	AAGCTT	2 cut(s)	572, 586
HinfI	GANTC	5 cut(s)	169, 192, 293, 596, 1043
HpaII	CCGG	1 cut(s)	685
HphI	GGTGA	3 cut(s)	253, 302, 832
Hpy166II	GTNNAC	3 cut(s)	252, 634, 904
Hpy188I	TCNGA	4 cut(s)	67, 298, 462, 514
Hpy188III	TCNNGA	5 cut(s)	723, 825, 887, 956, 1078
Hpy8I	GTNNAC	3 cut(s)	252, 634, 904
HpyAV	CCTTC	6 cut(s)	42, 63, 108, 383, 934, 1025
HpyCH4III	ACNGT	2 cut(s)	474, 648
HpyCH4V	TGCA	7 cut(s)	137, 142, 334, 542, 869, 974, 1040
HpyF10VI	GCNNNNNNNGC	2 cut(s)	158, 875
HpyF3I	CTNAG	4 cut(s)	276, 888, 894, 915
Hsp92II	CATG	2 cut(s)	752, 867
Ksp22I	TGATCA	1 cut(s)	514
Kzo9I	GATC	2 cut(s)	514, 547
LguI	GCTCTTC	1 cut(s)	493
LmnI	GCTCC	1 cut(s)	222
Lsp1109I	GCAGC	2 cut(s)	862, 1097
LweI	GCATC	2 cut(s)	529, 983
MaeI	CTAG	3 cut(s)	189, 1055, 1141
MaeIII	GTNAC	3 cut(s)	241, 838, 956
MalI	GATC	2 cut(s)	516, 549
MboI	GATC	2 cut(s)	514, 547
MboII	GAAGA	8 cut(s)	48, 178, 196, 480, 670, 680, 946, 949
MhlI	GDGCHC	1 cut(s)	444
MluCI	AATT	3 cut(s)	8, 610, 705
MlyI	GAGTC	1 cut(s)	1037
MmeI	TCCRAC	2 cut(s)	90, 447
MnlI	CCTC	8 cut(s)	56, 60, 223, 251, 418, 424, 534, 1061
MroXI	GAANNNNTTC	1 cut(s)	118
MseI	TTAA	2 cut(s)	753, 777
MspA1I	CMGCKG	3 cut(s)	386, 494, 1088
MspI	CCGG	1 cut(s)	685
MspR9I	CCNGG	3 cut(s)	82, 288, 1025
MvaI	CCWGG	3 cut(s)	82, 288, 1025
MwoI	GCNNNNNNNGC	2 cut(s)	158, 875
NdeII	GATC	2 cut(s)	514, 547
NlaIII	CATG	2 cut(s)	752, 867
NlaIV	GGNNCC	2 cut(s)	79, 218
NmuCI	GTSAC	3 cut(s)	241, 838, 956
NspI	RCATGY	1 cut(s)	867
PciSI	GCTCTTC	1 cut(s)	493
PdmI	GAANNNNTTC	1 cut(s)	118
PfeI	GAWTC	4 cut(s)	169, 192, 293, 596
PinAI	ACCGGT	1 cut(s)	684
PkrI	GCNGC	3 cut(s)	701, 877, 1087
PleI	GAGTC	1 cut(s)	1037
PpsI	GAGTC	1 cut(s)	1037
Psp6I	CCWGG	3 cut(s)	80, 286, 1023
PspGI	CCWGG	3 cut(s)	80, 286, 1023
PspN4I	GGNNCC	2 cut(s)	79, 218
PspPI	GGNCC	1 cut(s)	644
PvuII	CAGCTG	3 cut(s)	386, 494, 1088
RsaI	GTAC	2 cut(s)	21, 476
RsaNI	GTAC	2 cut(s)	20, 475
SapI	GCTCTTC	1 cut(s)	493
SaqAI	TTAA	2 cut(s)	753, 777
SatI	GCNGC	3 cut(s)	700, 876, 1086
Sau3AI	GATC	2 cut(s)	514, 547
Sau96I	GGNCC	1 cut(s)	644
SchI	GAGTC	1 cut(s)	1037
ScrFI	CCNGG	3 cut(s)	82, 288, 1025
SduI	GDGCHC	1 cut(s)	444
SfaNI	GCATC	2 cut(s)	529, 983
SinI	GGWCC	1 cut(s)	644
SmlI	CTYRAG	2 cut(s)	96, 575
SmoI	CTYRAG	2 cut(s)	96, 575
Sse9I	AATT	3 cut(s)	8, 610, 705
SsiI	CCGC	2 cut(s)	700, 768
SspMI	CTAG	3 cut(s)	189, 1055, 1141
StyD4I	CCNGG	3 cut(s)	80, 286, 1023
TaaI	ACNGT	2 cut(s)	474, 648
TaqI	TCGA	5 cut(s)	155, 360, 594, 977, 1029
TaqII	GACCGA	2 cut(s)	551, 734
TasI	AATT	3 cut(s)	8, 610, 705
TatI	WGTACW	2 cut(s)	19, 474
TauI	GCSGC	1 cut(s)	702
TfiI	GAWTC	4 cut(s)	169, 192, 293, 596
Tru1I	TTAA	2 cut(s)	753, 777
Tru9I	TTAA	2 cut(s)	753, 777
TseFI	GTSAC	3 cut(s)	241, 838, 956
TseI	GCWGC	2 cut(s)	875, 1085
Tsp45I	GTSAC	3 cut(s)	241, 838, 956
TspDTI	ATGAA	2 cut(s)	184, 807
TspGWI	ACGGA	1 cut(s)	432
VpaK11BI	GGWCC	1 cut(s)	644
XagI	CCTNNNNNAGG	1 cut(s)	224
XceI	RCATGY	1 cut(s)	867
XmiI	GTMKAC	1 cut(s)	633
XmnI	GAANNNNTTC	1 cut(s)	118
XspI	CTAG	3 cut(s)	189, 1055, 1141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.