Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007395.1

Orthogroup ID

OG0008555

Physical Location & Seq

Genomic Coordinates Reverse (-)

33823 .. 34601

Gene Structure 779 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007395.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

atgcaactagaagccaccatcgacgctggaacgtcgctggacaagccaaagcaacaaaactctgctgctggatttcctgagcctgagattgttcactataaccctaaggagtttgactttgggaagaagaaggcatttccatttcgtgaccggcatttctttgcatcgattgataaagcgaacagcgtgattgggtggaaacccgaatatggcctggtcgaaggtcttgcagactcctacaacctagactttggcagagggacattcaggaaagcagctgatttttcaacagatgacatcattcttggcaagagtcttgttctccaaagctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000427 GO:0000428 GO:0001101 GO:0001871 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005777 GO:0005840 GO:0005911 GO:0005975 GO:0005996 GO:0006139 GO:0006355 GO:0006364 GO:0006396 GO:0006412 GO:0006417 GO:0006518 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0007154 GO:0007623 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009628 GO:0009657 GO:0009658 GO:0009889 GO:0009891 GO:0009893 GO:0009941 GO:0009987 GO:0009991 GO:0010035 GO:0010287 GO:0010297 GO:0010319 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0016020 GO:0016043 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0019538 GO:0022613 GO:0030054 GO:0030246 GO:0030247 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031668 GO:0031967 GO:0031975 GO:0032268 GO:0032270 GO:0032544 GO:0032991 GO:0033554 GO:0034248 GO:0034250 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0042254 GO:0042579 GO:0042631 GO:0042742 GO:0043043 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045727 GO:0045893 GO:0045935 GO:0046483 GO:0048046 GO:0048511 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0060255 GO:0061695 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0098542 GO:0104004 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901700 GO:1901701 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:1990904 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase

Protein Analysis

110

Amino Acids

12.26

Weight (kDa)

5.62

Isoelectric Point (pI)

32.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008555)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09340 AT1G09340
fragaria_vesca	FvH4_6g07910 FvH4_6g07910 FvH4_6g07910
malus_domestica	MD04G1191000.v1.1 MD12G1203600.v1.1
prunus_persica	Prupe.6G309500_v2.0.a1
pyrus_communis	pycom12g19030
rosa_chinensis	RchiOBHm_Chr3g0457611
rosa_laevigata	RLG00000025204 RLG00000025205
rosa_multiflora	Rmu_sc0005321.1_g000007 Rmu_sc0005321.1_g000009 Rmu_sc0007395.1_g000009 Rmu_sc0007395.1_g000012
rosa_roxburghii	Rroxscaffold_6G00421680
rosa_rugosa	Rorug03G0022100.1
rosa_samantha	Rh3BG084800 Rh3CG085000 Rh3DG086200 Rh3DG086300
rosa_wichuraiana	Rw3G007090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	1 cut(s)	209
AgsI	TTSAA	1 cut(s)	288
AjnI	CCWGG	1 cut(s)	213
AluBI	AGCT	2 cut(s)	278, 330
AluI	AGCT	2 cut(s)	278, 330
AoxI	GGCC	1 cut(s)	211
ApeKI	GCWGC	2 cut(s)	65, 275
AxyI	CCTNAGG	1 cut(s)	105
BbvI	GCAGC	2 cut(s)	52, 287
BccI	CCATC	1 cut(s)	26
BcgI	CGANNNNNNTGC	2 cut(s)	209, 243
BciT130I	CCWGG	1 cut(s)	215
BfaI	CTAG	3 cut(s)	8, 245, 331
BisI	GCNGC	2 cut(s)	66, 276
BlsI	GCNGC	2 cut(s)	67, 277
Bme1390I	CCNGG	1 cut(s)	215
BmrFI	CCNGG	1 cut(s)	215
BmsI	GCATC	1 cut(s)	173
Bpu10I	CCTNAGC	1 cut(s)	78
Bsa29I	ATCGAT	1 cut(s)	167
Bsc4I	CCNNNNNNNGG	1 cut(s)	209
Bse118I	RCCGGY	1 cut(s)	150
Bse21I	CCTNAGG	1 cut(s)	105
BseBI	CCWGG	1 cut(s)	215
BseCI	ATCGAT	1 cut(s)	167
BseLI	CCNNNNNNNGG	1 cut(s)	209
BseMII	CTCAG	2 cut(s)	69, 75
BseXI	GCAGC	2 cut(s)	52, 287
BshFI	GGCC	1 cut(s)	213
BshVI	ATCGAT	1 cut(s)	167
BsiSI	CCGG	1 cut(s)	151
BslFI	GGGAC	1 cut(s)	274
BslI	CCNNNNNNNGG	1 cut(s)	209
BsmFI	GGGAC	1 cut(s)	274
BsnI	GGCC	1 cut(s)	213
BspANI	GGCC	1 cut(s)	213
BspCNI	CTCAG	2 cut(s)	70, 76
BspDI	ATCGAT	1 cut(s)	167
BsrFI	RCCGGY	1 cut(s)	150
BssAI	RCCGGY	1 cut(s)	150
Bst2UI	CCWGG	1 cut(s)	215
BstDEI	CTNAG	3 cut(s)	78, 84, 105
BstMWI	GCNNNNNNNGC	1 cut(s)	43
BstNI	CCWGG	1 cut(s)	215
BstSCI	CCNGG	1 cut(s)	213
BstV1I	GCAGC	2 cut(s)	52, 287
Bsu15I	ATCGAT	1 cut(s)	167
Bsu36I	CCTNAGG	1 cut(s)	105
BsuRI	GGCC	1 cut(s)	213
BsuTUI	ATCGAT	1 cut(s)	167
Cfr10I	RCCGGY	1 cut(s)	150
ClaI	ATCGAT	1 cut(s)	167
CseI	GACGC	1 cut(s)	32
CviJI	RGCY	6 cut(s)	14, 46, 82, 213, 278, 330
CviKI_1	RGCY	6 cut(s)	14, 46, 82, 213, 278, 330
DdeI	CTNAG	3 cut(s)	78, 84, 105
Eco81I	CCTNAGG	1 cut(s)	105
EcoRII	CCWGG	1 cut(s)	213
FaiI	YATR	2 cut(s)	99, 210
FaqI	GGGAC	1 cut(s)	274
Fnu4HI	GCNGC	2 cut(s)	66, 276
Fsp4HI	GCNGC	2 cut(s)	66, 276
FspBI	CTAG	3 cut(s)	8, 245, 331
GluI	GCNGC	2 cut(s)	66, 276
HaeIII	GGCC	1 cut(s)	213
HapII	CCGG	1 cut(s)	151
HgaI	GACGC	1 cut(s)	32
HinfI	GANTC	2 cut(s)	233, 313
HpaII	CCGG	1 cut(s)	151
Hpy166II	GTNNAC	1 cut(s)	94
Hpy188III	TCNNGA	3 cut(s)	77, 146, 268
Hpy8I	GTNNAC	1 cut(s)	94
Hpy99I	CGWCG	2 cut(s)	26, 37
HpyAV	CCTTC	2 cut(s)	124, 215
HpyCH4IV	ACGT	1 cut(s)	32
HpyCH4V	TGCA	3 cut(s)	4, 164, 230
HpyF10VI	GCNNNNNNNGC	1 cut(s)	43
HpyF3I	CTNAG	3 cut(s)	78, 84, 105
HpySE526I	ACGT	1 cut(s)	32
LpnPI	CCDG	9 cut(s)	12, 23, 54, 90, 96, 164, 200, 227, 253
Lsp1109I	GCAGC	2 cut(s)	52, 287
LweI	GCATC	1 cut(s)	173
MaeI	CTAG	3 cut(s)	8, 245, 331
MaeII	ACGT	1 cut(s)	32
MaeIII	GTNAC	1 cut(s)	146
MboII	GAAGA	2 cut(s)	136, 139
MlyI	GAGTC	2 cut(s)	227, 322
MnlI	CCTC	1 cut(s)	251
MspA1I	CMGCKG	1 cut(s)	278
MspI	CCGG	1 cut(s)	151
MspR9I	CCNGG	1 cut(s)	215
MvaI	CCWGG	1 cut(s)	215
MwoI	GCNNNNNNNGC	1 cut(s)	43
NmuCI	GTSAC	1 cut(s)	146
PkrI	GCNGC	2 cut(s)	67, 277
PleI	GAGTC	2 cut(s)	227, 321
PpsI	GAGTC	2 cut(s)	227, 321
Psp6I	CCWGG	1 cut(s)	213
PspGI	CCWGG	1 cut(s)	213
PvuII	CAGCTG	1 cut(s)	278
SatI	GCNGC	2 cut(s)	66, 276
SchI	GAGTC	2 cut(s)	227, 322
ScrFI	CCNGG	1 cut(s)	215
SetI	ASST	5 cut(s)	35, 226, 246, 280, 332
SfaNI	GCATC	1 cut(s)	173
SspMI	CTAG	3 cut(s)	8, 245, 331
StyD4I	CCNGG	1 cut(s)	213
TaiI	ACGT	1 cut(s)	35
TaqI	TCGA	3 cut(s)	21, 167, 219
TseFI	GTSAC	1 cut(s)	146
TseI	GCWGC	2 cut(s)	65, 275
Tsp45I	GTSAC	1 cut(s)	146
XspI	CTAG	3 cut(s)	8, 245, 331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.