Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005321.1

Orthogroup ID

OG0008555

Physical Location & Seq

Genomic Coordinates Forward (+)

19722 .. 21828

Gene Structure 2107 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005321.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

atggcgaaattggtgtctgtacagagacacccttctttctctctcctccctccttcttctctctccgacttcaatggcaccaggctactccactctcatgtccagtataagagaagggtttcacagccaaaaggtgcattgcaagtttcggcttcgagtgccaagaagattctcataatgggtgggactagattcattggtatcttcttgtcaaggctccttgtcaaggagggtcatcaggtgactttgttcaccagaggaaaagcacccatcactcagcagttgccaggtgaatcggatagcgactacacggagtttgcttccaagattttgcatctgaaaggagacagaaaggactttgattttgtgaagtccagtctttcagctgaaggctttgatgttgtttatgacataaatgtctacatctatggaccgttgaactacaatcctgttgaagagtggttcttccaccggttgaaagctggccgcccaattccagttccaaactcgggaatacagataacacaactcggtcatgttaaggatttagcaaccgcatttattaaggttcttggtaatgaaaaggccagtaaggaagtgttcaacatctctggagaaaaatatgtcacctttgatggattagcaaaggcatgtgcaaaggctgctggatttccggagcctgagattgttcactataaccctaaggagtttgactttgggaagaagaaggcatttccatttcgtgaccagcatttctttgcatcaattgacaaagcgaagagcgtgcttgggtggaaacctgaatatggcctggtcgaaggtcttgcagactcctacaacctagactttggcagagggacattcaggaaagcagcagatttttcaacagatgacatcattcttggcaagagtcttgttctccaaagctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000427 GO:0000428 GO:0001101 GO:0001871 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005777 GO:0005840 GO:0005911 GO:0005975 GO:0005996 GO:0006139 GO:0006355 GO:0006364 GO:0006396 GO:0006412 GO:0006417 GO:0006518 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0007154 GO:0007623 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009628 GO:0009657 GO:0009658 GO:0009889 GO:0009891 GO:0009893 GO:0009941 GO:0009987 GO:0009991 GO:0010035 GO:0010287 GO:0010297 GO:0010319 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0016020 GO:0016043 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0019538 GO:0022613 GO:0030054 GO:0030246 GO:0030247 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031668 GO:0031967 GO:0031975 GO:0032268 GO:0032270 GO:0032544 GO:0032991 GO:0033554 GO:0034248 GO:0034250 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0042254 GO:0042579 GO:0042631 GO:0042742 GO:0043043 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045727 GO:0045893 GO:0045935 GO:0046483 GO:0048046 GO:0048511 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0060255 GO:0061695 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0098542 GO:0104004 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901700 GO:1901701 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:1990904 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase

Protein Analysis

309

Amino Acids

34.38

Weight (kDa)

9.37

Isoelectric Point (pI)

32.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008555)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09340 AT1G09340
fragaria_vesca	FvH4_6g07910 FvH4_6g07910 FvH4_6g07910
malus_domestica	MD04G1191000.v1.1 MD12G1203600.v1.1
prunus_persica	Prupe.6G309500_v2.0.a1
pyrus_communis	pycom12g19030
rosa_chinensis	RchiOBHm_Chr3g0457611
rosa_laevigata	RLG00000025204 RLG00000025205
rosa_multiflora	Rmu_sc0005321.1_g000007 Rmu_sc0005321.1_g000009 Rmu_sc0007395.1_g000009 Rmu_sc0007395.1_g000012
rosa_roxburghii	Rroxscaffold_6G00421680
rosa_rugosa	Rorug03G0022100.1
rosa_samantha	Rh3BG084800 Rh3CG085000 Rh3DG086200 Rh3DG086300
rosa_wichuraiana	Rw3G007090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	416
AccB1I	GGYRCC	1 cut(s)	77
AccI	GTMKAC	1 cut(s)	420
AccIII	TCCGGA	1 cut(s)	673
AciI	CCGC	2 cut(s)	487, 555
AcoI	YGGCCR	1 cut(s)	484
AcuI	CTGAAG	1 cut(s)	408
AfaI	GTAC	1 cut(s)	21
AfiI	CCNNNNNNNGG	3 cut(s)	226, 509, 806
AgeI	ACCGGT	1 cut(s)	471
AgsI	TTSAA	6 cut(s)	73, 439, 455, 478, 604, 885
AjnI	CCWGG	3 cut(s)	80, 286, 810
AluBI	AGCT	3 cut(s)	386, 482, 927
AluI	AGCT	3 cut(s)	386, 482, 927
Alw26I	GTCTC	2 cut(s)	19, 339
Ama87I	CYCGRG	1 cut(s)	508
Aor13HI	TCCGGA	1 cut(s)	673
AoxI	GGCC	3 cut(s)	484, 585, 808
ApeKI	GCWGC	2 cut(s)	662, 872
ArsI	GACNNNNNNTTYG	3 cut(s)	31, 347, 379
AsiGI	ACCGGT	1 cut(s)	471
Asp700I	GAANNNNTTC	1 cut(s)	118
AspS9I	GGNCC	1 cut(s)	431
AsuHPI	GGTGA	4 cut(s)	244, 253, 302, 619
AvaI	CYCGRG	1 cut(s)	508
AvaII	GGWCC	1 cut(s)	431
AxyI	CCTNAGG	1 cut(s)	702
BanI	GGYRCC	1 cut(s)	77
BbvI	GCAGC	2 cut(s)	649, 884
BccI	CCATC	2 cut(s)	278, 629
BcgI	CGANNNNNNTGC	4 cut(s)	766, 800, 806, 840
BciT130I	CCWGG	3 cut(s)	82, 288, 812
BcoDI	GTCTC	2 cut(s)	19, 339
BfaI	CTAG	3 cut(s)	189, 842, 928
BisI	GCNGC	3 cut(s)	487, 663, 873
BlsI	GCNGC	3 cut(s)	488, 664, 874
Bme1390I	CCNGG	3 cut(s)	82, 288, 812
Bme18I	GGWCC	1 cut(s)	431
BmeT110I	CYCGRG	1 cut(s)	508
BmgT120I	GGNCC	1 cut(s)	431
BmiI	GGNNCC	3 cut(s)	79, 218, 678
BmrFI	CCNGG	3 cut(s)	82, 288, 812
BmsI	GCATC	2 cut(s)	343, 770
BpmI	CTGGAG	1 cut(s)	633
BsaWI	WCCGGW	2 cut(s)	471, 673
Bsc4I	CCNNNNNNNGG	3 cut(s)	226, 509, 806
Bse118I	RCCGGY	1 cut(s)	471
Bse1I	ACTGG	4 cut(s)	103, 375, 497, 588
Bse21I	CCTNAGG	1 cut(s)	702
Bse3DI	GCAATG	1 cut(s)	137
BseAI	TCCGGA	1 cut(s)	673
BseBI	CCWGG	3 cut(s)	82, 288, 812
BseLI	CCNNNNNNNGG	3 cut(s)	226, 509, 806
BseMI	GCAATG	1 cut(s)	137
BseMII	CTCAG	2 cut(s)	290, 672
BseNI	ACTGG	4 cut(s)	103, 375, 497, 588
BseRI	GAGGAG	1 cut(s)	35
BseXI	GCAGC	2 cut(s)	649, 884
BshFI	GGCC	3 cut(s)	486, 587, 810
BshNI	GGYRCC	1 cut(s)	77
BshTI	ACCGGT	1 cut(s)	471
BsiHKCI	CYCGRG	1 cut(s)	508
BsiSI	CCGG	2 cut(s)	472, 674
BslFI	GGGAC	2 cut(s)	199, 871
BslI	CCNNNNNNNGG	3 cut(s)	226, 509, 806
BsmAI	GTCTC	2 cut(s)	19, 339
BsmFI	GGGAC	2 cut(s)	199, 871
BsnI	GGCC	3 cut(s)	486, 587, 810
BsoBI	CYCGRG	1 cut(s)	508
Bsp13I	TCCGGA	1 cut(s)	673
Bsp1407I	TGTACA	1 cut(s)	19
BspACI	CCGC	2 cut(s)	487, 555
BspANI	GGCC	3 cut(s)	486, 587, 810
BspCNI	CTCAG	2 cut(s)	289, 673
BspEI	TCCGGA	1 cut(s)	673
BspLI	GGNNCC	3 cut(s)	79, 218, 678
BspQI	GCTCTTC	1 cut(s)	773
BspT107I	GGYRCC	1 cut(s)	77
BsrDI	GCAATG	1 cut(s)	137
BsrFI	RCCGGY	1 cut(s)	471
BsrGI	TGTACA	1 cut(s)	19
BsrI	ACTGG	4 cut(s)	103, 375, 497, 588
BssAI	RCCGGY	1 cut(s)	471
Bst2UI	CCWGG	3 cut(s)	82, 288, 812
Bst4CI	ACNGT	1 cut(s)	435
Bst6I	CTCTTC	2 cut(s)	450, 773
BstAPI	GCANNNNNTGC	1 cut(s)	662
BstAUI	TGTACA	1 cut(s)	19
BstC8I	GCNNGC	2 cut(s)	484, 785
BstDEI	CTNAG	3 cut(s)	276, 681, 702
BstENI	CCTNNNNNAGG	1 cut(s)	224
BstMAI	GTCTC	2 cut(s)	19, 339
BstMWI	GCNNNNNNNGC	2 cut(s)	158, 662
BstNI	CCWGG	3 cut(s)	82, 288, 812
BstNSI	RCATGY	1 cut(s)	654
BstSCI	CCNGG	3 cut(s)	80, 286, 810
BstV1I	GCAGC	2 cut(s)	649, 884
Bsu36I	CCTNAGG	1 cut(s)	702
BsuRI	GGCC	3 cut(s)	486, 587, 810
Cac8I	GCNNGC	2 cut(s)	484, 785
Cfr10I	RCCGGY	1 cut(s)	471
Cfr13I	GGNCC	1 cut(s)	431
Csp6I	GTAC	1 cut(s)	20
CspAI	ACCGGT	1 cut(s)	471
CviAII	CATG	3 cut(s)	98, 536, 651
CviQI	GTAC	1 cut(s)	20
DdeI	CTNAG	3 cut(s)	276, 681, 702
DrdI	GACNNNNNNGTC	1 cut(s)	416
DseDI	GACNNNNNNGTC	1 cut(s)	416
EaeI	YGGCCR	1 cut(s)	484
Eam1104I	CTCTTC	2 cut(s)	450, 773
EarI	CTCTTC	2 cut(s)	450, 773
Eco47I	GGWCC	1 cut(s)	431
Eco57I	CTGAAG	1 cut(s)	408
Eco81I	CCTNAGG	1 cut(s)	702
Eco88I	CYCGRG	1 cut(s)	508
EcoNI	CCTNNNNNAGG	1 cut(s)	224
EcoRII	CCWGG	3 cut(s)	80, 286, 810
FaeI	CATG	3 cut(s)	101, 539, 654
FaqI	GGGAC	2 cut(s)	199, 871
FatI	CATG	3 cut(s)	97, 535, 650
FblI	GTMKAC	1 cut(s)	420
Fnu4HI	GCNGC	3 cut(s)	487, 663, 873
Fsp4HI	GCNGC	3 cut(s)	487, 663, 873
FspBI	CTAG	3 cut(s)	189, 842, 928
GluI	GCNGC	3 cut(s)	487, 663, 873
GsuI	CTGGAG	1 cut(s)	633
HaeIII	GGCC	3 cut(s)	486, 587, 810
HapII	CCGG	2 cut(s)	472, 674
Hin1II	CATG	3 cut(s)	101, 539, 654
HinfI	GANTC	5 cut(s)	169, 192, 293, 830, 910
HpaII	CCGG	2 cut(s)	472, 674
HphI	GGTGA	4 cut(s)	244, 253, 302, 619
Hpy166II	GTNNAC	3 cut(s)	252, 421, 691
Hpy188I	TCNGA	3 cut(s)	67, 298, 339
Hpy188III	TCNNGA	5 cut(s)	510, 612, 674, 743, 865
Hpy8I	GTNNAC	3 cut(s)	252, 421, 691
HpyAV	CCTTC	6 cut(s)	42, 63, 108, 383, 721, 812
HpyCH4III	ACNGT	1 cut(s)	435
HpyCH4V	TGCA	6 cut(s)	137, 142, 334, 656, 761, 827
HpyF10VI	GCNNNNNNNGC	2 cut(s)	158, 662
HpyF3I	CTNAG	3 cut(s)	276, 681, 702
Hsp92II	CATG	3 cut(s)	101, 539, 654
Kpn2I	TCCGGA	1 cut(s)	673
LguI	GCTCTTC	1 cut(s)	773
LmnI	GCTCC	2 cut(s)	222, 676
Lsp1109I	GCAGC	2 cut(s)	649, 884
LweI	GCATC	2 cut(s)	343, 770
MaeI	CTAG	3 cut(s)	189, 842, 928
MaeIII	GTNAC	3 cut(s)	241, 625, 743
MboII	GAAGA	8 cut(s)	48, 178, 196, 457, 467, 733, 736, 790
MfeI	CAATTG	1 cut(s)	765
MluCI	AATT	3 cut(s)	8, 492, 765
MlyI	GAGTC	2 cut(s)	824, 919
MmeI	TCCRAC	1 cut(s)	90
MnlI	CCTC	5 cut(s)	56, 60, 223, 251, 848
MroI	TCCGGA	1 cut(s)	673
MroXI	GAANNNNTTC	1 cut(s)	118
MseI	TTAA	2 cut(s)	540, 564
MslI	CAYNNNNRTG	1 cut(s)	96
MspA1I	CMGCKG	1 cut(s)	386
MspI	CCGG	2 cut(s)	472, 674
MspR9I	CCNGG	3 cut(s)	82, 288, 812
MunI	CAATTG	1 cut(s)	765
MvaI	CCWGG	3 cut(s)	82, 288, 812
MwoI	GCNNNNNNNGC	2 cut(s)	158, 662
NlaIII	CATG	3 cut(s)	101, 539, 654
NlaIV	GGNNCC	3 cut(s)	79, 218, 678
NmuCI	GTSAC	3 cut(s)	241, 625, 743
NspI	RCATGY	1 cut(s)	654
PciSI	GCTCTTC	1 cut(s)	773
PdmI	GAANNNNTTC	1 cut(s)	118
PfeI	GAWTC	3 cut(s)	169, 192, 293
PinAI	ACCGGT	1 cut(s)	471
PkrI	GCNGC	3 cut(s)	488, 664, 874
PleI	GAGTC	2 cut(s)	824, 918
PpsI	GAGTC	2 cut(s)	824, 918
Psp6I	CCWGG	3 cut(s)	80, 286, 810
PspGI	CCWGG	3 cut(s)	80, 286, 810
PspN4I	GGNNCC	3 cut(s)	79, 218, 678
PspPI	GGNCC	1 cut(s)	431
PvuII	CAGCTG	1 cut(s)	386
RsaI	GTAC	1 cut(s)	21
RsaNI	GTAC	1 cut(s)	20
RseI	CAYNNNNRTG	1 cut(s)	96
SapI	GCTCTTC	1 cut(s)	773
SaqAI	TTAA	2 cut(s)	540, 564
SatI	GCNGC	3 cut(s)	487, 663, 873
Sau96I	GGNCC	1 cut(s)	431
SchI	GAGTC	2 cut(s)	824, 919
ScrFI	CCNGG	3 cut(s)	82, 288, 812
SfaNI	GCATC	2 cut(s)	343, 770
SinI	GGWCC	1 cut(s)	431
SmiMI	CAYNNNNRTG	1 cut(s)	96
Sse9I	AATT	3 cut(s)	8, 492, 765
SsiI	CCGC	2 cut(s)	487, 555
SspMI	CTAG	3 cut(s)	189, 842, 928
StyD4I	CCNGG	3 cut(s)	80, 286, 810
TaaI	ACNGT	1 cut(s)	435
TaqI	TCGA	2 cut(s)	155, 816
TaqII	GACCGA	1 cut(s)	521
TasI	AATT	3 cut(s)	8, 492, 765
TatI	WGTACW	1 cut(s)	19
TauI	GCSGC	1 cut(s)	489
TfiI	GAWTC	3 cut(s)	169, 192, 293
Tru1I	TTAA	2 cut(s)	540, 564
Tru9I	TTAA	2 cut(s)	540, 564
TseFI	GTSAC	3 cut(s)	241, 625, 743
TseI	GCWGC	2 cut(s)	662, 872
Tsp45I	GTSAC	3 cut(s)	241, 625, 743
TspDTI	ATGAA	2 cut(s)	184, 594
TspGWI	ACGGA	1 cut(s)	326
VpaK11BI	GGWCC	1 cut(s)	431
XagI	CCTNNNNNAGG	1 cut(s)	224
XceI	RCATGY	1 cut(s)	654
XmiI	GTMKAC	1 cut(s)	420
XmnI	GAANNNNTTC	1 cut(s)	118
XspI	CTAG	3 cut(s)	189, 842, 928

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.