Prupe.6G309500_v2.0.a1

Chloroplast stem-loop binding protein of 41 kDa b

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0008555
Physical Location & Seq
Reverse (-)
27805420 .. 27809030
3611 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G309500.1

Sequence Viewer

Length: 1152 bp
ATGGCACGGTTGGTGGCTGTGCAACCGCAGCAGAGACACCCTTCCTTCTCTCTCCTTCCTCCTTCCTCTCTCTCTGACTTCAATGGCACCAGACTACTTCACTCCCAACTCCAGTGTAAAAGAAGGGTGTCACAGCCAAAAGTAGCATTACAAGTTACAGCATCAAGTGCAAAGAAGATTCTTATAATGGGGGGCACCCGATTCATTGGTCTGTTCTTGTCAAGACTCCTTGTCAAAGAGGGTCATCAGGTGACTCTGTTTACCAGAGGAAAAGCACCAATCACTCAACAGTTGCCAGGTGAATCCGATAAGGACTACACAGATTTTGCTTCAAAGATTCTGCACTTGAAAGGAGACAGAAAAGACTATGAGTTTGTGAAATCCAGTCTTTCAGCTGAAGGCTTTGATGTTGTTTATGATATAAATGGACGAGAGGCAGAGGAAGTTGTGCCAATACTGGAGGGACTACCGAAGTTAGAACAGTATATATACTGCTCTTCAGCCGGTGTCTATCTCAAATCTGATCAATTACCTCACTTTGAGACCGATACAGTTGATCCAAAGAGCAGGCACAAGGGAAAGCTTGAGACAGAGAGCTTGCTAGAATCAAAGGGTGTCAATTGGACTTCTATAAGGCCAGTCTACATCTATGGACCATTGAACTACAACCCTGTTGAAGAGTGGTTCTTCCACCGGTTGAAAGCTGGCCGCCCAATCCCAGTTCCAAACTCAGGGATACAAATAACACAACTAGGTCATGTTAAGGATTTAGCGACAGCCTTCATTAAGGTTCTTGGGAATGAAAAGGCAAGCAAGGAAGTATTCAACATCTCTGGAGAAAAATACGTCACCTTTGATGGATTAGCAAAAGCATGTGCAAAGGCTGGTGGTTTTCCTGAACCTGAGATCGTTCACTACAACCCCAAAGAGTTTGATTTCGGCAAGAAGAAGGCATTTCCATTCCGTGACCAGCATTTCTTTGCATCGATTGACAAAGCAAAGAGCGTGCTTGGCTGGAAACCTGAGTTTGACCTGGTGGAAGGTCTTGCAGACTCCTACAACCTAGACTTTGGTAGAGGAACTTTCAGGAAAGAAGCTGATTTCTCAACAGATGACATCATTCTTGGAAAGAGTCTGGTTCTCCAAAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000427 GO:0000428 GO:0001101 GO:0001871 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005777 GO:0005840 GO:0005911 GO:0005975 GO:0005996 GO:0006139 GO:0006355 GO:0006364 GO:0006396 GO:0006412 GO:0006417 GO:0006518 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0007154 GO:0007623 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009628 GO:0009657 GO:0009658 GO:0009889 GO:0009891 GO:0009893 GO:0009941 GO:0009987 GO:0009991 GO:0010035 GO:0010287 GO:0010297 GO:0010319 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0016020 GO:0016043 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0019538 GO:0022613 GO:0030054 GO:0030246 GO:0030247 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031668 GO:0031967 GO:0031975 GO:0032268 GO:0032270 GO:0032544 GO:0032991 GO:0033554 GO:0034248 GO:0034250 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0042254 GO:0042579 GO:0042631 GO:0042742 GO:0043043 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045727 GO:0045893 GO:0045935 GO:0046483 GO:0048046 GO:0048511 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0060255 GO:0061695 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0098542 GO:0104004 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901700 GO:1901701 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:1990904 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Epimerase

Protein Analysis

384

Amino Acids

42.88

Weight (kDa)

8.82

Isoelectric Point (pI)

34.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 185
AccB1I GGYRCC 2 cut(s) 86, 194
AccI GTMKAC 1 cut(s) 642
AciI CCGC 2 cut(s) 26, 709
AclWI GGATC 1 cut(s) 551
AcoI YGGCCR 1 cut(s) 706
AcuI CTGAAG 2 cut(s) 417, 483
AfiI CCNNNNNNNGG 1 cut(s) 731
AgeI ACCGGT 1 cut(s) 693
AgsI TTSAA 7 cut(s) 82, 333, 349, 661, 677, 700, 826
AhdI GACNNNNNGTC 1 cut(s) 230
AjnI CCWGG 2 cut(s) 295, 1032
AluBI AGCT 6 cut(s) 395, 583, 597, 704, 1097, 1149
AluI AGCT 6 cut(s) 395, 583, 597, 704, 1097, 1149
Alw26I GTCTC 4 cut(s) 28, 348, 536, 581
AlwI GGATC 1 cut(s) 551
AoxI GGCC 2 cut(s) 635, 706
ApeKI GCWGC 1 cut(s) 28
ArsI GACNNNNNNTTYG 2 cut(s) 356, 388
AsiGI ACCGGT 1 cut(s) 693
AspS9I GGNCC 1 cut(s) 653
AsuHPI GGTGA 3 cut(s) 262, 311, 841
AvaII GGWCC 1 cut(s) 653
BaeGI GKGCMC 1 cut(s) 197
BanI GGYRCC 2 cut(s) 86, 194
BbvI GCAGC 1 cut(s) 40
BccI CCATC 1 cut(s) 851
BciT130I CCWGG 2 cut(s) 297, 1034
BciVI GTATCC 1 cut(s) 729
BclI TGATCA 1 cut(s) 523
BcoDI GTCTC 4 cut(s) 28, 348, 536, 581
BfaI CTAG 3 cut(s) 602, 752, 1064
BfuI GTATCC 1 cut(s) 729
BisI GCNGC 2 cut(s) 29, 709
BlsI GCNGC 2 cut(s) 30, 710
Bme1390I CCNGG 2 cut(s) 297, 1034
Bme18I GGWCC 1 cut(s) 653
BmeRI GACNNNNNGTC 1 cut(s) 230
BmgT120I GGNCC 1 cut(s) 653
BmiI GGNNCC 2 cut(s) 88, 196
BmrFI CCNGG 2 cut(s) 297, 1034
BmrI ACTGGG 1 cut(s) 713
BmsI GCATC 2 cut(s) 170, 992
BmuI ACTGGG 1 cut(s) 713
BpmI CTGGAG 3 cut(s) 95, 479, 855
BpuEI CTTGAG 1 cut(s) 605
Bsa29I ATCGAT 1 cut(s) 986
BsaI GGTCTC 1 cut(s) 536
BsaWI WCCGGW 1 cut(s) 693
Bsc4I CCNNNNNNNGG 1 cut(s) 731
Bse118I RCCGGY 2 cut(s) 503, 693
Bse1I ACTGG 5 cut(s) 112, 384, 462, 638, 719
BseBI CCWGG 2 cut(s) 297, 1034
BseCI ATCGAT 1 cut(s) 986
BseLI CCNNNNNNNGG 1 cut(s) 731
BseMII CTCAG 3 cut(s) 744, 894, 1014
BseNI ACTGG 5 cut(s) 112, 384, 462, 638, 719
BseSI GKGCMC 1 cut(s) 197
BseXI GCAGC 1 cut(s) 40
BsgI GTGCAG 1 cut(s) 326
BshFI GGCC 2 cut(s) 637, 708
BshNI GGYRCC 2 cut(s) 86, 194
BshTI ACCGGT 1 cut(s) 693
BshVI ATCGAT 1 cut(s) 986
BsiSI CCGG 2 cut(s) 504, 694
BslFI GGGAC 1 cut(s) 477
BslI CCNNNNNNNGG 1 cut(s) 731
BsmAI GTCTC 4 cut(s) 28, 348, 536, 581
BsmFI GGGAC 1 cut(s) 477
BsnI GGCC 2 cut(s) 637, 708
Bso31I GGTCTC 1 cut(s) 536
Bsp1286I GDGCHC 1 cut(s) 197
Bsp143I GATC 3 cut(s) 523, 556, 906
BspACI CCGC 2 cut(s) 26, 709
BspANI GGCC 2 cut(s) 637, 708
BspCNI CTCAG 3 cut(s) 743, 895, 1015
BspDI ATCGAT 1 cut(s) 986
BspLI GGNNCC 2 cut(s) 88, 196
BspPI GGATC 1 cut(s) 551
BspQI GCTCTTC 1 cut(s) 502
BspT107I GGYRCC 2 cut(s) 86, 194
BspTNI GGTCTC 1 cut(s) 536
BsrFI RCCGGY 2 cut(s) 503, 693
BsrI ACTGG 5 cut(s) 112, 384, 462, 638, 719
BssAI RCCGGY 2 cut(s) 503, 693
BssMI GATC 3 cut(s) 523, 556, 906
Bst2UI CCWGG 2 cut(s) 297, 1034
Bst4CI ACNGT 4 cut(s) 9, 291, 483, 553
Bst6I CTCTTC 2 cut(s) 502, 672
BstAPI GCANNNNNTGC 1 cut(s) 167
BstC8I GCNNGC 5 cut(s) 569, 599, 706, 811, 1007
BstDEI CTNAG 3 cut(s) 730, 903, 1023
BstKTI GATC 3 cut(s) 526, 559, 909
BstMAI GTCTC 4 cut(s) 28, 348, 536, 581
BstMBI GATC 3 cut(s) 523, 556, 906
BstMWI GCNNNNNNNGC 3 cut(s) 28, 167, 1011
BstNI CCWGG 2 cut(s) 297, 1034
BstNSI RCATGY 1 cut(s) 876
BstSCI CCNGG 2 cut(s) 295, 1032
BstSLI GKGCMC 1 cut(s) 197
BstV1I GCAGC 1 cut(s) 40
Bsu15I ATCGAT 1 cut(s) 986
BsuI GTATCC 1 cut(s) 729
BsuRI GGCC 2 cut(s) 637, 708
BsuTUI ATCGAT 1 cut(s) 986
BtsIMutI CAGTG 1 cut(s) 119
Cac8I GCNNGC 5 cut(s) 569, 599, 706, 811, 1007
Cfr10I RCCGGY 2 cut(s) 503, 693
Cfr13I GGNCC 1 cut(s) 653
ClaI ATCGAT 1 cut(s) 986
CsiI ACCWGGT 1 cut(s) 1032
CspAI ACCGGT 1 cut(s) 693
CviAII CATG 2 cut(s) 758, 873
DdeI CTNAG 3 cut(s) 730, 903, 1023
DpnI GATC 3 cut(s) 525, 558, 908
DpnII GATC 3 cut(s) 523, 556, 906
DriI GACNNNNNGTC 1 cut(s) 230
EaeI YGGCCR 1 cut(s) 706
Eam1104I CTCTTC 2 cut(s) 502, 672
Eam1105I GACNNNNNGTC 1 cut(s) 230
EarI CTCTTC 2 cut(s) 502, 672
Eco31I GGTCTC 1 cut(s) 536
Eco47I GGWCC 1 cut(s) 653
Eco57I CTGAAG 2 cut(s) 417, 483
EcoRII CCWGG 2 cut(s) 295, 1032
FaeI CATG 2 cut(s) 761, 876
FaqI GGGAC 1 cut(s) 477
FatI CATG 2 cut(s) 757, 872
FbaI TGATCA 1 cut(s) 523
FblI GTMKAC 1 cut(s) 642
Fnu4HI GCNGC 2 cut(s) 29, 709
Fsp4HI GCNGC 2 cut(s) 29, 709
FspBI CTAG 3 cut(s) 602, 752, 1064
GluI GCNGC 2 cut(s) 29, 709
GsuI CTGGAG 3 cut(s) 95, 479, 855
HaeIII GGCC 2 cut(s) 637, 708
HapII CCGG 2 cut(s) 504, 694
Hin1II CATG 2 cut(s) 761, 876
HindIII AAGCTT 1 cut(s) 581
HinfI GANTC 9 cut(s) 178, 201, 225, 253, 302, 337, 605, 1052, 1132
HpaII CCGG 2 cut(s) 504, 694
HphI GGTGA 3 cut(s) 262, 311, 841
Hpy166II GTNNAC 3 cut(s) 261, 643, 913
Hpy188I TCNGA 3 cut(s) 76, 307, 523
Hpy188III TCNNGA 4 cut(s) 222, 834, 896, 1087
Hpy8I GTNNAC 3 cut(s) 261, 643, 913
HpyAV CCTTC 9 cut(s) 51, 55, 65, 72, 117, 392, 790, 943, 1034
HpyCH4III ACNGT 4 cut(s) 9, 291, 483, 553
HpyCH4IV ACGT 1 cut(s) 846
HpyCH4V TGCA 6 cut(s) 22, 170, 343, 878, 983, 1049
HpyF10VI GCNNNNNNNGC 3 cut(s) 28, 167, 1011
HpyF3I CTNAG 3 cut(s) 730, 903, 1023
HpySE526I ACGT 1 cut(s) 846
Hsp92II CATG 2 cut(s) 761, 876
Ksp22I TGATCA 1 cut(s) 523
Kzo9I GATC 3 cut(s) 523, 556, 906
LguI GCTCTTC 1 cut(s) 502
Lsp1109I GCAGC 1 cut(s) 40
LweI GCATC 2 cut(s) 170, 992
MabI ACCWGGT 1 cut(s) 1032
MaeI CTAG 3 cut(s) 602, 752, 1064
MaeII ACGT 1 cut(s) 846
MaeIII GTNAC 5 cut(s) 129, 154, 250, 847, 965
MalI GATC 3 cut(s) 525, 558, 908
MboI GATC 3 cut(s) 523, 556, 906
MboII GAAGA 5 cut(s) 187, 489, 679, 689, 958
MfeI CAATTG 1 cut(s) 619
MhlI GDGCHC 1 cut(s) 197
MluCI AATT 2 cut(s) 527, 619
MlyI GAGTC 4 cut(s) 219, 247, 1046, 1141
MnlI CCTC 9 cut(s) 69, 76, 232, 260, 427, 433, 454, 543, 1070
MseI TTAA 2 cut(s) 762, 786
MspA1I CMGCKG 1 cut(s) 395
MspI CCGG 2 cut(s) 504, 694
MspR9I CCNGG 2 cut(s) 297, 1034
MunI CAATTG 1 cut(s) 619
MvaI CCWGG 2 cut(s) 297, 1034
MwoI GCNNNNNNNGC 3 cut(s) 28, 167, 1011
NdeII GATC 3 cut(s) 523, 556, 906
NlaIII CATG 2 cut(s) 761, 876
NlaIV GGNNCC 2 cut(s) 88, 196
NmuCI GTSAC 4 cut(s) 129, 250, 847, 965
NspI RCATGY 1 cut(s) 876
PciSI GCTCTTC 1 cut(s) 502
PfeI GAWTC 5 cut(s) 178, 201, 302, 337, 605
PinAI ACCGGT 1 cut(s) 693
PkrI GCNGC 2 cut(s) 30, 710
PleI GAGTC 4 cut(s) 219, 247, 1046, 1140
PpsI GAGTC 4 cut(s) 219, 247, 1046, 1140
PsiI TTATAA 1 cut(s) 185
Psp6I CCWGG 2 cut(s) 295, 1032
PspGI CCWGG 2 cut(s) 295, 1032
PspN4I GGNNCC 2 cut(s) 88, 196
PspPI GGNCC 1 cut(s) 653
PvuII CAGCTG 1 cut(s) 395
SapI GCTCTTC 1 cut(s) 502
SaqAI TTAA 2 cut(s) 762, 786
SatI GCNGC 2 cut(s) 29, 709
Sau3AI GATC 3 cut(s) 523, 556, 906
Sau96I GGNCC 1 cut(s) 653
SchI GAGTC 4 cut(s) 219, 247, 1046, 1141
ScrFI CCNGG 2 cut(s) 297, 1034
SduI GDGCHC 1 cut(s) 197
SexAI ACCWGGT 1 cut(s) 1032
SfaNI GCATC 2 cut(s) 170, 992
SinI GGWCC 1 cut(s) 653
SmlI CTYRAG 1 cut(s) 584
SmoI CTYRAG 1 cut(s) 584
Sse9I AATT 2 cut(s) 527, 619
SsiI CCGC 2 cut(s) 26, 709
SspMI CTAG 3 cut(s) 602, 752, 1064
StyD4I CCNGG 2 cut(s) 295, 1032
TaaI ACNGT 4 cut(s) 9, 291, 483, 553
TaiI ACGT 1 cut(s) 849
TaqI TCGA 1 cut(s) 986
TaqII GACCGA 1 cut(s) 560
TasI AATT 2 cut(s) 527, 619
TauI GCSGC 1 cut(s) 711
TfiI GAWTC 5 cut(s) 178, 201, 302, 337, 605
Tru1I TTAA 2 cut(s) 762, 786
Tru9I TTAA 2 cut(s) 762, 786
TscAI CASTG 1 cut(s) 119
TseFI GTSAC 4 cut(s) 129, 250, 847, 965
TseI GCWGC 1 cut(s) 28
Tsp45I GTSAC 4 cut(s) 129, 250, 847, 965
TspDTI ATGAA 3 cut(s) 193, 772, 816
TspGWI ACGGA 1 cut(s) 953
TspRI CASTG 1 cut(s) 119
VpaK11BI GGWCC 1 cut(s) 653
XceI RCATGY 1 cut(s) 876
XmiI GTMKAC 1 cut(s) 642
XspI CTAG 3 cut(s) 602, 752, 1064
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.