Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0008555

Physical Location & Seq

Genomic Coordinates Forward (+)

6710340 .. 6712337

Gene Structure 1998 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG086300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGTGATGAACGTGGAGGTGGATCTTGTATACGTGGGAGGTGCAAGTGTAAAGTGTAAGGCAACCGCATTTATTAAGGTTCTTGGTAATGAAAAGGCCAGCAAGGAAGTGTTCAACATCTCTGGAGAAAAATATGTCACCTTTGATGGATTAGCAAAAGCATGTGCAAATGCTGCTGGATTTCCTGAGCCTGAGATTGTTCACTATAACCCTAAGGAGTTTGACTTTGGGAAGAAGAAGGCATTTCCATTTCGTGACCGGCATTTCTTTGCATCGATTGATAAAGCGAAGAGCGTGATTGGGTGGAAGGATTGGGTGGAAACCCGAATATGGCCTGGTCGAAGGTCTTGCAGACTCCTACAACCTAGACTTTGGCAGAGGGACATTCAGGAAAGCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000427 GO:0000428 GO:0001101 GO:0001871 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005777 GO:0005840 GO:0005911 GO:0005975 GO:0005996 GO:0006139 GO:0006355 GO:0006364 GO:0006396 GO:0006412 GO:0006417 GO:0006518 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0007154 GO:0007623 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009628 GO:0009657 GO:0009658 GO:0009889 GO:0009891 GO:0009893 GO:0009941 GO:0009987 GO:0009991 GO:0010035 GO:0010287 GO:0010297 GO:0010319 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0016020 GO:0016043 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0019538 GO:0022613 GO:0030054 GO:0030246 GO:0030247 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031668 GO:0031967 GO:0031975 GO:0032268 GO:0032270 GO:0032544 GO:0032991 GO:0033554 GO:0034248 GO:0034250 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0042254 GO:0042579 GO:0042631 GO:0042742 GO:0043043 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045727 GO:0045893 GO:0045935 GO:0046483 GO:0048046 GO:0048511 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0060255 GO:0061695 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0098542 GO:0104004 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901700 GO:1901701 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:1990904 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase

Protein Analysis

133

Amino Acids

15.15

Weight (kDa)

9.32

Isoelectric Point (pI)

44.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008555)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09340 AT1G09340
fragaria_vesca	FvH4_6g07910 FvH4_6g07910 FvH4_6g07910
malus_domestica	MD04G1191000.v1.1 MD12G1203600.v1.1
prunus_persica	Prupe.6G309500_v2.0.a1
pyrus_communis	pycom12g19030
rosa_chinensis	RchiOBHm_Chr3g0457611
rosa_laevigata	RLG00000025204 RLG00000025205
rosa_multiflora	Rmu_sc0005321.1_g000007 Rmu_sc0005321.1_g000009 Rmu_sc0007395.1_g000009 Rmu_sc0007395.1_g000012
rosa_roxburghii	Rroxscaffold_6G00421680
rosa_rugosa	Rorug03G0022100.1
rosa_samantha	Rh3BG084800 Rh3CG085000 Rh3DG086200 Rh3DG086300
rosa_wichuraiana	Rw3G007090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	30
AciI	CCGC	1 cut(s)	66
AclWI	GGATC	1 cut(s)	30
AfiI	CCNNNNNNNGG	1 cut(s)	330
AgsI	TTSAA	1 cut(s)	115
AjnI	CCWGG	1 cut(s)	334
AluBI	AGCT	1 cut(s)	399
AluI	AGCT	1 cut(s)	399
AlwI	GGATC	1 cut(s)	30
AoxI	GGCC	2 cut(s)	96, 332
ApeKI	GCWGC	2 cut(s)	173, 396
AsuHPI	GGTGA	2 cut(s)	16, 130
AxyI	CCTNAGG	1 cut(s)	213
BbvI	GCAGC	1 cut(s)	160
BccI	CCATC	1 cut(s)	140
BcgI	CGANNNNNNTGC	2 cut(s)	330, 364
BciT130I	CCWGG	1 cut(s)	336
BfaI	CTAG	1 cut(s)	366
BisI	GCNGC	2 cut(s)	174, 397
BlsI	GCNGC	2 cut(s)	175, 398
Bme1390I	CCNGG	1 cut(s)	336
BmrFI	CCNGG	1 cut(s)	336
BmsI	GCATC	1 cut(s)	281
BpmI	CTGGAG	1 cut(s)	144
Bpu10I	CCTNAGC	1 cut(s)	186
Bsa29I	ATCGAT	1 cut(s)	275
BsaAI	YACGTR	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	1 cut(s)	330
Bse118I	RCCGGY	1 cut(s)	258
Bse21I	CCTNAGG	1 cut(s)	213
BseBI	CCWGG	1 cut(s)	336
BseCI	ATCGAT	1 cut(s)	275
BseLI	CCNNNNNNNGG	1 cut(s)	330
BseMII	CTCAG	2 cut(s)	177, 183
BseXI	GCAGC	1 cut(s)	160
BshFI	GGCC	2 cut(s)	98, 334
BshVI	ATCGAT	1 cut(s)	275
BsiSI	CCGG	1 cut(s)	259
BslFI	GGGAC	1 cut(s)	395
BslI	CCNNNNNNNGG	1 cut(s)	330
BsmFI	GGGAC	1 cut(s)	395
BsnI	GGCC	2 cut(s)	98, 334
Bsp143I	GATC	1 cut(s)	22
BspACI	CCGC	1 cut(s)	66
BspANI	GGCC	2 cut(s)	98, 334
BspCNI	CTCAG	2 cut(s)	178, 184
BspDI	ATCGAT	1 cut(s)	275
BspPI	GGATC	1 cut(s)	30
BspQI	GCTCTTC	1 cut(s)	284
BsrFI	RCCGGY	1 cut(s)	258
BssAI	RCCGGY	1 cut(s)	258
BssMI	GATC	1 cut(s)	22
BssNAI	GTATAC	1 cut(s)	31
Bst1107I	GTATAC	1 cut(s)	31
Bst2UI	CCWGG	1 cut(s)	336
Bst6I	CTCTTC	1 cut(s)	284
BstAPI	GCANNNNNTGC	1 cut(s)	173
BstBAI	YACGTR	1 cut(s)	34
BstC8I	GCNNGC	1 cut(s)	100
BstDEI	CTNAG	3 cut(s)	186, 192, 213
BstKTI	GATC	1 cut(s)	25
BstMBI	GATC	1 cut(s)	22
BstMWI	GCNNNNNNNGC	1 cut(s)	173
BstNI	CCWGG	1 cut(s)	336
BstNSI	RCATGY	1 cut(s)	165
BstSCI	CCNGG	1 cut(s)	334
BstV1I	GCAGC	1 cut(s)	160
BstX2I	RGATCY	1 cut(s)	22
BstYI	RGATCY	1 cut(s)	22
BstZ17I	GTATAC	1 cut(s)	31
Bsu15I	ATCGAT	1 cut(s)	275
Bsu36I	CCTNAGG	1 cut(s)	213
BsuRI	GGCC	2 cut(s)	98, 334
BsuTUI	ATCGAT	1 cut(s)	275
Cac8I	GCNNGC	1 cut(s)	100
Cfr10I	RCCGGY	1 cut(s)	258
ClaI	ATCGAT	1 cut(s)	275
CviAII	CATG	1 cut(s)	162
CviJI	RGCY	4 cut(s)	98, 190, 334, 399
CviKI_1	RGCY	4 cut(s)	98, 190, 334, 399
DdeI	CTNAG	3 cut(s)	186, 192, 213
DpnI	GATC	1 cut(s)	24
DpnII	GATC	1 cut(s)	22
Eam1104I	CTCTTC	1 cut(s)	284
EarI	CTCTTC	1 cut(s)	284
Eco81I	CCTNAGG	1 cut(s)	213
EcoRII	CCWGG	1 cut(s)	334
FaeI	CATG	1 cut(s)	165
FaiI	YATR	5 cut(s)	31, 135, 163, 207, 331
FaqI	GGGAC	1 cut(s)	395
FatI	CATG	1 cut(s)	161
FblI	GTMKAC	1 cut(s)	30
Fnu4HI	GCNGC	2 cut(s)	174, 397
Fsp4HI	GCNGC	2 cut(s)	174, 397
FspBI	CTAG	1 cut(s)	366
GluI	GCNGC	2 cut(s)	174, 397
GsuI	CTGGAG	1 cut(s)	144
HaeIII	GGCC	2 cut(s)	98, 334
HapII	CCGG	1 cut(s)	259
Hin1II	CATG	1 cut(s)	165
HinfI	GANTC	1 cut(s)	354
HpaII	CCGG	1 cut(s)	259
HphI	GGTGA	2 cut(s)	16, 130
Hpy166II	GTNNAC	2 cut(s)	31, 202
Hpy188III	TCNNGA	4 cut(s)	123, 185, 254, 389
Hpy8I	GTNNAC	2 cut(s)	31, 202
HpyAV	CCTTC	3 cut(s)	232, 301, 336
HpyCH4IV	ACGT	2 cut(s)	12, 33
HpyCH4V	TGCA	4 cut(s)	44, 167, 272, 351
HpyF10VI	GCNNNNNNNGC	1 cut(s)	173
HpyF3I	CTNAG	3 cut(s)	186, 192, 213
HpySE526I	ACGT	2 cut(s)	12, 33
Hsp92II	CATG	1 cut(s)	165
Kzo9I	GATC	1 cut(s)	22
LguI	GCTCTTC	1 cut(s)	284
LpnPI	CCDG	9 cut(s)	108, 112, 162, 198, 204, 272, 321, 348, 374
Lsp1109I	GCAGC	1 cut(s)	160
LweI	GCATC	1 cut(s)	281
MaeI	CTAG	1 cut(s)	366
MaeII	ACGT	2 cut(s)	12, 33
MaeIII	GTNAC	2 cut(s)	136, 254
MalI	GATC	1 cut(s)	24
MboI	GATC	1 cut(s)	22
MboII	GAAGA	3 cut(s)	244, 247, 301
MflI	RGATCY	1 cut(s)	22
MlyI	GAGTC	1 cut(s)	348
MnlI	CCTC	3 cut(s)	10, 32, 372
MseI	TTAA	1 cut(s)	75
MspA1I	CMGCKG	1 cut(s)	399
MspI	CCGG	1 cut(s)	259
MspR9I	CCNGG	1 cut(s)	336
MvaI	CCWGG	1 cut(s)	336
MwoI	GCNNNNNNNGC	1 cut(s)	173
NdeII	GATC	1 cut(s)	22
NlaIII	CATG	1 cut(s)	165
NmuCI	GTSAC	2 cut(s)	136, 254
NspI	RCATGY	1 cut(s)	165
PciSI	GCTCTTC	1 cut(s)	284
PkrI	GCNGC	2 cut(s)	175, 398
PleI	GAGTC	1 cut(s)	348
PpsI	GAGTC	1 cut(s)	348
Ppu21I	YACGTR	1 cut(s)	34
Psp6I	CCWGG	1 cut(s)	334
PspGI	CCWGG	1 cut(s)	334
PsuI	RGATCY	1 cut(s)	22
PvuII	CAGCTG	1 cut(s)	399
SapI	GCTCTTC	1 cut(s)	284
SaqAI	TTAA	1 cut(s)	75
SatI	GCNGC	2 cut(s)	174, 397
Sau3AI	GATC	1 cut(s)	22
SchI	GAGTC	1 cut(s)	348
ScrFI	CCNGG	1 cut(s)	336
SetI	ASST	9 cut(s)	15, 21, 36, 43, 81, 143, 347, 367, 401
SfaNI	GCATC	1 cut(s)	281
SsiI	CCGC	1 cut(s)	66
SspMI	CTAG	1 cut(s)	366
StyD4I	CCNGG	1 cut(s)	334
TaiI	ACGT	2 cut(s)	15, 36
TaqI	TCGA	2 cut(s)	275, 340
Tru1I	TTAA	1 cut(s)	75
Tru9I	TTAA	1 cut(s)	75
TseFI	GTSAC	2 cut(s)	136, 254
TseI	GCWGC	2 cut(s)	173, 396
Tsp45I	GTSAC	2 cut(s)	136, 254
TspDTI	ATGAA	2 cut(s)	23, 105
XceI	RCATGY	1 cut(s)	165
XmiI	GTMKAC	1 cut(s)	30
XspI	CTAG	1 cut(s)	366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.