Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0008555

Physical Location & Seq

Genomic Coordinates Reverse (-)

42996362 .. 42997237

Gene Structure 876 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025204

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGACTGCTGACCAAGGAAGAAGCAATGATTTAGCAACCGCATTTATTAAGGTTCTTGGTAATGAAAAGGCCAGCAAGGAAGTGTTCAACATCTCTGGAGAAAAATATGTCACCTTTGATGGATTAGCAAAAGCATGTGCAAAGGCTGCTGGATTTCCTGAGCTTGAGATTGTTCACTATAACCCTAAGGAGTTTGACTTTGGGAAGAAGAAGGCATTTCCATTTCGTGACCAGCATTTCTTTGCATCGATTGGCAAAGCGAAGAGCGTGCTTGGGTGGAAACCAGAATATGGCCTGGTCGAAGGTCTTGCAGACTCCTACAACCTAGAATTTGGCAGAGGGACATTCAGGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000427 GO:0000428 GO:0001101 GO:0001871 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005777 GO:0005840 GO:0005911 GO:0005975 GO:0005996 GO:0006139 GO:0006355 GO:0006364 GO:0006396 GO:0006412 GO:0006417 GO:0006518 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0007154 GO:0007623 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009628 GO:0009657 GO:0009658 GO:0009889 GO:0009891 GO:0009893 GO:0009941 GO:0009987 GO:0009991 GO:0010035 GO:0010287 GO:0010297 GO:0010319 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0016020 GO:0016043 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0019538 GO:0022613 GO:0030054 GO:0030246 GO:0030247 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031668 GO:0031967 GO:0031975 GO:0032268 GO:0032270 GO:0032544 GO:0032991 GO:0033554 GO:0034248 GO:0034250 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0042254 GO:0042579 GO:0042631 GO:0042742 GO:0043043 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045727 GO:0045893 GO:0045935 GO:0046483 GO:0048046 GO:0048511 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0060255 GO:0061695 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0098542 GO:0104004 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901700 GO:1901701 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:1990904 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase

Protein Analysis

119

Amino Acids

13.11

Weight (kDa)

8.97

Isoelectric Point (pI)

29.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008555)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09340 AT1G09340
fragaria_vesca	FvH4_6g07910 FvH4_6g07910 FvH4_6g07910
malus_domestica	MD04G1191000.v1.1 MD12G1203600.v1.1
prunus_persica	Prupe.6G309500_v2.0.a1
pyrus_communis	pycom12g19030
rosa_chinensis	RchiOBHm_Chr3g0457611
rosa_laevigata	RLG00000025204 RLG00000025205
rosa_multiflora	Rmu_sc0005321.1_g000007 Rmu_sc0005321.1_g000009 Rmu_sc0007395.1_g000009 Rmu_sc0007395.1_g000012
rosa_roxburghii	Rroxscaffold_6G00421680
rosa_rugosa	Rorug03G0022100.1
rosa_samantha	Rh3BG084800 Rh3CG085000 Rh3DG086200 Rh3DG086300
rosa_wichuraiana	Rw3G007090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	290
AciI	CCGC	1 cut(s)	39
AcsI	RAATTY	1 cut(s)	329
AfiI	CCNNNNNNNGG	1 cut(s)	290
AgsI	TTSAA	1 cut(s)	88
AjnI	CCWGG	1 cut(s)	294
AluBI	AGCT	1 cut(s)	163
AluI	AGCT	1 cut(s)	163
AoxI	GGCC	2 cut(s)	69, 292
ApeKI	GCWGC	1 cut(s)	146
ApoI	RAATTY	1 cut(s)	329
AsuHPI	GGTGA	1 cut(s)	103
AxyI	CCTNAGG	1 cut(s)	186
BbvI	GCAGC	1 cut(s)	133
BccI	CCATC	1 cut(s)	113
BcgI	CGANNNNNNTGC	4 cut(s)	250, 284, 290, 324
BciT130I	CCWGG	1 cut(s)	296
BfaI	CTAG	1 cut(s)	326
BisI	GCNGC	1 cut(s)	147
BlsI	GCNGC	1 cut(s)	148
Bme1390I	CCNGG	1 cut(s)	296
BmrFI	CCNGG	1 cut(s)	296
BmsI	GCATC	1 cut(s)	254
BpmI	CTGGAG	1 cut(s)	117
Bpu10I	CCTNAGC	1 cut(s)	159
BpuEI	CTTGAG	1 cut(s)	185
Bsa29I	ATCGAT	1 cut(s)	248
BsaJI	CCNNGG	1 cut(s)	13
Bsc4I	CCNNNNNNNGG	1 cut(s)	290
Bse21I	CCTNAGG	1 cut(s)	186
Bse3DI	GCAATG	1 cut(s)	31
BseBI	CCWGG	1 cut(s)	296
BseCI	ATCGAT	1 cut(s)	248
BseDI	CCNNGG	1 cut(s)	13
BseLI	CCNNNNNNNGG	1 cut(s)	290
BseMI	GCAATG	1 cut(s)	31
BseMII	CTCAG	1 cut(s)	150
BseXI	GCAGC	1 cut(s)	133
BshFI	GGCC	2 cut(s)	71, 294
BshVI	ATCGAT	1 cut(s)	248
BslI	CCNNNNNNNGG	1 cut(s)	290
BsnI	GGCC	2 cut(s)	71, 294
BspACI	CCGC	1 cut(s)	39
BspANI	GGCC	2 cut(s)	71, 294
BspCNI	CTCAG	1 cut(s)	151
BspDI	ATCGAT	1 cut(s)	248
BspQI	GCTCTTC	1 cut(s)	257
BsrDI	GCAATG	1 cut(s)	31
BssECI	CCNNGG	1 cut(s)	13
BssT1I	CCWWGG	1 cut(s)	13
Bst2UI	CCWGG	1 cut(s)	296
Bst6I	CTCTTC	1 cut(s)	257
BstAPI	GCANNNNNTGC	1 cut(s)	146
BstC8I	GCNNGC	2 cut(s)	73, 269
BstDEI	CTNAG	2 cut(s)	159, 186
BstMWI	GCNNNNNNNGC	1 cut(s)	146
BstNI	CCWGG	1 cut(s)	296
BstNSI	RCATGY	1 cut(s)	138
BstSCI	CCNGG	1 cut(s)	294
BstV1I	GCAGC	1 cut(s)	133
Bsu15I	ATCGAT	1 cut(s)	248
Bsu36I	CCTNAGG	1 cut(s)	186
BsuRI	GGCC	2 cut(s)	71, 294
BsuTUI	ATCGAT	1 cut(s)	248
Cac8I	GCNNGC	2 cut(s)	73, 269
ClaI	ATCGAT	1 cut(s)	248
CviAII	CATG	1 cut(s)	135
CviJI	RGCY	4 cut(s)	71, 146, 163, 294
CviKI_1	RGCY	4 cut(s)	71, 146, 163, 294
DdeI	CTNAG	2 cut(s)	159, 186
Eam1104I	CTCTTC	1 cut(s)	257
EarI	CTCTTC	1 cut(s)	257
Eco130I	CCWWGG	1 cut(s)	13
Eco81I	CCTNAGG	1 cut(s)	186
EcoRII	CCWGG	1 cut(s)	294
EcoT14I	CCWWGG	1 cut(s)	13
ErhI	CCWWGG	1 cut(s)	13
FaeI	CATG	1 cut(s)	138
FaiI	YATR	4 cut(s)	108, 136, 180, 291
FatI	CATG	1 cut(s)	134
Fnu4HI	GCNGC	1 cut(s)	147
Fsp4HI	GCNGC	1 cut(s)	147
FspBI	CTAG	1 cut(s)	326
GluI	GCNGC	1 cut(s)	147
GsuI	CTGGAG	1 cut(s)	117
HaeIII	GGCC	2 cut(s)	71, 294
Hin1II	CATG	1 cut(s)	138
HinfI	GANTC	1 cut(s)	314
HphI	GGTGA	1 cut(s)	103
Hpy166II	GTNNAC	1 cut(s)	175
Hpy188III	TCNNGA	4 cut(s)	96, 158, 227, 349
Hpy8I	GTNNAC	1 cut(s)	175
HpyAV	CCTTC	2 cut(s)	205, 296
HpyCH4V	TGCA	3 cut(s)	140, 245, 311
HpyF10VI	GCNNNNNNNGC	1 cut(s)	146
HpyF3I	CTNAG	2 cut(s)	159, 186
Hsp92II	CATG	1 cut(s)	138
LguI	GCTCTTC	1 cut(s)	257
LpnPI	CCDG	9 cut(s)	81, 85, 135, 171, 245, 281, 297, 308, 334
Lsp1109I	GCAGC	1 cut(s)	133
LweI	GCATC	1 cut(s)	254
MaeI	CTAG	1 cut(s)	326
MaeIII	GTNAC	2 cut(s)	109, 227
MboII	GAAGA	4 cut(s)	30, 217, 220, 274
MluCI	AATT	1 cut(s)	329
MlyI	GAGTC	1 cut(s)	308
MnlI	CCTC	1 cut(s)	332
MseI	TTAA	1 cut(s)	48
MspR9I	CCNGG	1 cut(s)	296
MvaI	CCWGG	1 cut(s)	296
MwoI	GCNNNNNNNGC	1 cut(s)	146
NlaIII	CATG	1 cut(s)	138
NmuCI	GTSAC	2 cut(s)	109, 227
NspI	RCATGY	1 cut(s)	138
PciSI	GCTCTTC	1 cut(s)	257
PflMI	CCANNNNNTGG	1 cut(s)	290
PkrI	GCNGC	1 cut(s)	148
PleI	GAGTC	1 cut(s)	308
PpsI	GAGTC	1 cut(s)	308
Psp6I	CCWGG	1 cut(s)	294
PspGI	CCWGG	1 cut(s)	294
SapI	GCTCTTC	1 cut(s)	257
SaqAI	TTAA	1 cut(s)	48
SatI	GCNGC	1 cut(s)	147
SchI	GAGTC	1 cut(s)	308
ScrFI	CCNGG	1 cut(s)	296
SetI	ASST	5 cut(s)	54, 116, 165, 307, 327
SfaNI	GCATC	1 cut(s)	254
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
Sse9I	AATT	1 cut(s)	329
SsiI	CCGC	1 cut(s)	39
SspMI	CTAG	1 cut(s)	326
StyD4I	CCNGG	1 cut(s)	294
StyI	CCWWGG	1 cut(s)	13
TaqI	TCGA	2 cut(s)	248, 300
TasI	AATT	1 cut(s)	329
Tru1I	TTAA	1 cut(s)	48
Tru9I	TTAA	1 cut(s)	48
TseFI	GTSAC	2 cut(s)	109, 227
TseI	GCWGC	1 cut(s)	146
Tsp45I	GTSAC	2 cut(s)	109, 227
TspDTI	ATGAA	1 cut(s)	78
Van91I	CCANNNNNTGG	1 cut(s)	290
XapI	RAATTY	1 cut(s)	329
XceI	RCATGY	1 cut(s)	138
XspI	CTAG	1 cut(s)	326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.