Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007395.1

Orthogroup ID

OG0008555

Physical Location & Seq

Genomic Coordinates Reverse (-)

38194 .. 41387

Gene Structure 3194 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007395.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

atgggtgggactagattcattggtatcttcttgtcaaggctccttgtcaaggagggtcatcaggtgactttgttcaccagaggaaaagcacccatcactcagcagttgccaggtgaatcggatagcgactacacggagtttgcttccaagattttgcatctgaaaggagacagaaaggactttgattttgtgaagtccagtctttcagctgaaggctttgatgttgtttatgacataaatggacgagaggcagaggagattgtgcccatattggatggacttccgaagttggaacagtacatatactgctcttcagctggtgtttatctcaaatctgatcaactgcctcactttgagaccgatgcagttgatccaaagagcaggcacaagggaaagcttgagacagaaagcttgctcgaatcacggggtgtaaattggacttctataaggccagtctacatctatggaccgttgaactacaatcctgttgaagagtggttcttccaccggttgaaagctggccgcccaattccagttccaaactcgggaatacagataacacaactcggtcatgttaaggatttagcaaccgcatttattaaggttcttggtaatgaaaaggccagtaaggaagtgttcaacatctctggagaaaaatatgtcacctttgatggattagcaaaggcatgtgcaaaggctgctggatttccggagcctgagattgttcactataaccctaaggagtttgactttgggaagaagaaggcatttccatttcgtgaccagcatttctttgcatcaattgacaaagcgaagagcgtgcttgggtggaaacctgaatatggcctggtcgaaggtcttgcagactcctacaacctagactttggcagagggacattcaggaaagcagcagatttttcaacagatgacatcattcttggcaagagtcttgttctccaaagctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000427 GO:0000428 GO:0001101 GO:0001871 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005777 GO:0005840 GO:0005911 GO:0005975 GO:0005996 GO:0006139 GO:0006355 GO:0006364 GO:0006396 GO:0006412 GO:0006417 GO:0006518 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0007154 GO:0007623 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009628 GO:0009657 GO:0009658 GO:0009889 GO:0009891 GO:0009893 GO:0009941 GO:0009987 GO:0009991 GO:0010035 GO:0010287 GO:0010297 GO:0010319 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0016020 GO:0016043 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0019538 GO:0022613 GO:0030054 GO:0030246 GO:0030247 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031668 GO:0031967 GO:0031975 GO:0032268 GO:0032270 GO:0032544 GO:0032991 GO:0033554 GO:0034248 GO:0034250 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0042254 GO:0042579 GO:0042631 GO:0042742 GO:0043043 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045727 GO:0045893 GO:0045935 GO:0046483 GO:0048046 GO:0048511 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0060255 GO:0061695 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0098542 GO:0104004 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901700 GO:1901701 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:1990904 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase

Protein Analysis

321

Amino Acids

35.88

Weight (kDa)

6.47

Isoelectric Point (pI)

30.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008555)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09340 AT1G09340
fragaria_vesca	FvH4_6g07910 FvH4_6g07910 FvH4_6g07910
malus_domestica	MD04G1191000.v1.1 MD12G1203600.v1.1
prunus_persica	Prupe.6G309500_v2.0.a1
pyrus_communis	pycom12g19030
rosa_chinensis	RchiOBHm_Chr3g0457611
rosa_laevigata	RLG00000025204 RLG00000025205
rosa_multiflora	Rmu_sc0005321.1_g000007 Rmu_sc0005321.1_g000009 Rmu_sc0007395.1_g000009 Rmu_sc0007395.1_g000012
rosa_roxburghii	Rroxscaffold_6G00421680
rosa_rugosa	Rorug03G0022100.1
rosa_samantha	Rh3BG084800 Rh3CG085000 Rh3DG086200 Rh3DG086300
rosa_wichuraiana	Rw3G007090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	456
AccIII	TCCGGA	1 cut(s)	709
AciI	CCGC	2 cut(s)	523, 591
AclWI	GGATC	1 cut(s)	365
AcoI	YGGCCR	1 cut(s)	520
AcuI	CTGAAG	2 cut(s)	231, 297
AdeI	CACNNNGTG	1 cut(s)	428
AfaI	GTAC	1 cut(s)	299
AfiI	CCNNNNNNNGG	3 cut(s)	49, 545, 842
AgeI	ACCGGT	1 cut(s)	507
AgsI	TTSAA	5 cut(s)	475, 491, 514, 640, 921
AjnI	CCWGG	2 cut(s)	109, 846
AluBI	AGCT	6 cut(s)	209, 317, 397, 411, 518, 963
AluI	AGCT	6 cut(s)	209, 317, 397, 411, 518, 963
Alw26I	GTCTC	3 cut(s)	162, 350, 395
AlwI	GGATC	1 cut(s)	365
Ama87I	CYCGRG	1 cut(s)	544
Aor13HI	TCCGGA	1 cut(s)	709
AoxI	GGCC	4 cut(s)	449, 520, 621, 844
ApeKI	GCWGC	2 cut(s)	698, 908
ArsI	GACNNNNNNTTYG	2 cut(s)	170, 202
AsiGI	ACCGGT	1 cut(s)	507
AspS9I	GGNCC	1 cut(s)	467
AsuHPI	GGTGA	4 cut(s)	67, 76, 125, 655
AvaI	CYCGRG	1 cut(s)	544
AvaII	GGWCC	1 cut(s)	467
AxyI	CCTNAGG	1 cut(s)	738
BaeGI	GKGCMC	1 cut(s)	267
BbvI	GCAGC	2 cut(s)	685, 920
BccI	CCATC	3 cut(s)	101, 269, 665
BcgI	CGANNNNNNTGC	4 cut(s)	802, 836, 842, 876
BciT130I	CCWGG	2 cut(s)	111, 848
BclI	TGATCA	1 cut(s)	337
BcoDI	GTCTC	3 cut(s)	162, 350, 395
BfaI	CTAG	3 cut(s)	12, 878, 964
BisI	GCNGC	3 cut(s)	523, 699, 909
BlsI	GCNGC	3 cut(s)	524, 700, 910
Bme1390I	CCNGG	2 cut(s)	111, 848
Bme18I	GGWCC	1 cut(s)	467
BmeT110I	CYCGRG	1 cut(s)	544
BmgT120I	GGNCC	1 cut(s)	467
BmiI	GGNNCC	2 cut(s)	41, 714
BmrFI	CCNGG	2 cut(s)	111, 848
BmsI	GCATC	3 cut(s)	166, 352, 806
BpmI	CTGGAG	1 cut(s)	669
BpuEI	CTTGAG	1 cut(s)	419
BsaI	GGTCTC	1 cut(s)	350
BsaWI	WCCGGW	2 cut(s)	507, 709
Bsc4I	CCNNNNNNNGG	3 cut(s)	49, 545, 842
Bse118I	RCCGGY	1 cut(s)	507
Bse1I	ACTGG	4 cut(s)	198, 452, 533, 624
Bse21I	CCTNAGG	1 cut(s)	738
BseAI	TCCGGA	1 cut(s)	709
BseBI	CCWGG	2 cut(s)	111, 848
BseGI	GGATG	1 cut(s)	280
BseLI	CCNNNNNNNGG	3 cut(s)	49, 545, 842
BseMII	CTCAG	2 cut(s)	113, 708
BseNI	ACTGG	4 cut(s)	198, 452, 533, 624
BseRI	GAGGAG	1 cut(s)	269
BseSI	GKGCMC	1 cut(s)	267
BseXI	GCAGC	2 cut(s)	685, 920
BshFI	GGCC	4 cut(s)	451, 522, 623, 846
BshTI	ACCGGT	1 cut(s)	507
BsiHKCI	CYCGRG	1 cut(s)	544
BsiSI	CCGG	2 cut(s)	508, 710
BslFI	GGGAC	2 cut(s)	22, 907
BslI	CCNNNNNNNGG	3 cut(s)	49, 545, 842
BsmAI	GTCTC	3 cut(s)	162, 350, 395
BsmFI	GGGAC	2 cut(s)	22, 907
BsnI	GGCC	4 cut(s)	451, 522, 623, 846
Bso31I	GGTCTC	1 cut(s)	350
BsoBI	CYCGRG	1 cut(s)	544
Bsp1286I	GDGCHC	1 cut(s)	267
Bsp13I	TCCGGA	1 cut(s)	709
Bsp143I	GATC	2 cut(s)	337, 370
BspACI	CCGC	2 cut(s)	523, 591
BspANI	GGCC	4 cut(s)	451, 522, 623, 846
BspCNI	CTCAG	2 cut(s)	112, 709
BspEI	TCCGGA	1 cut(s)	709
BspLI	GGNNCC	2 cut(s)	41, 714
BspPI	GGATC	1 cut(s)	365
BspQI	GCTCTTC	2 cut(s)	316, 809
BspTNI	GGTCTC	1 cut(s)	350
BsrFI	RCCGGY	1 cut(s)	507
BsrI	ACTGG	4 cut(s)	198, 452, 533, 624
BssAI	RCCGGY	1 cut(s)	507
BssMI	GATC	2 cut(s)	337, 370
Bst2UI	CCWGG	2 cut(s)	111, 848
Bst4CI	ACNGT	2 cut(s)	297, 471
Bst6I	CTCTTC	3 cut(s)	316, 486, 809
BstAPI	GCANNNNNTGC	1 cut(s)	698
BstC8I	GCNNGC	4 cut(s)	383, 413, 520, 821
BstDEI	CTNAG	3 cut(s)	99, 717, 738
BstENI	CCTNNNNNAGG	1 cut(s)	47
BstF5I	GGATG	1 cut(s)	280
BstKTI	GATC	2 cut(s)	340, 373
BstMAI	GTCTC	3 cut(s)	162, 350, 395
BstMBI	GATC	2 cut(s)	337, 370
BstMWI	GCNNNNNNNGC	1 cut(s)	698
BstNI	CCWGG	2 cut(s)	111, 848
BstNSI	RCATGY	1 cut(s)	690
BstSCI	CCNGG	2 cut(s)	109, 846
BstSLI	GKGCMC	1 cut(s)	267
BstV1I	GCAGC	2 cut(s)	685, 920
Bsu36I	CCTNAGG	1 cut(s)	738
BsuRI	GGCC	4 cut(s)	451, 522, 623, 846
BtsCI	GGATG	1 cut(s)	280
Cac8I	GCNNGC	4 cut(s)	383, 413, 520, 821
Cfr10I	RCCGGY	1 cut(s)	507
Cfr13I	GGNCC	1 cut(s)	467
Csp6I	GTAC	1 cut(s)	298
CspAI	ACCGGT	1 cut(s)	507
CviAII	CATG	2 cut(s)	572, 687
CviQI	GTAC	1 cut(s)	298
DdeI	CTNAG	3 cut(s)	99, 717, 738
DpnI	GATC	2 cut(s)	339, 372
DpnII	GATC	2 cut(s)	337, 370
DraIII	CACNNNGTG	1 cut(s)	428
EaeI	YGGCCR	1 cut(s)	520
Eam1104I	CTCTTC	3 cut(s)	316, 486, 809
EarI	CTCTTC	3 cut(s)	316, 486, 809
Eco31I	GGTCTC	1 cut(s)	350
Eco47I	GGWCC	1 cut(s)	467
Eco57I	CTGAAG	2 cut(s)	231, 297
Eco81I	CCTNAGG	1 cut(s)	738
Eco88I	CYCGRG	1 cut(s)	544
EcoNI	CCTNNNNNAGG	1 cut(s)	47
EcoRII	CCWGG	2 cut(s)	109, 846
FaeI	CATG	2 cut(s)	575, 690
FaqI	GGGAC	2 cut(s)	22, 907
FatI	CATG	2 cut(s)	571, 686
FbaI	TGATCA	1 cut(s)	337
FblI	GTMKAC	1 cut(s)	456
Fnu4HI	GCNGC	3 cut(s)	523, 699, 909
FokI	GGATG	1 cut(s)	287
Fsp4HI	GCNGC	3 cut(s)	523, 699, 909
FspBI	CTAG	3 cut(s)	12, 878, 964
GluI	GCNGC	3 cut(s)	523, 699, 909
GsuI	CTGGAG	1 cut(s)	669
HaeIII	GGCC	4 cut(s)	451, 522, 623, 846
HapII	CCGG	2 cut(s)	508, 710
Hin1II	CATG	2 cut(s)	575, 690
HindIII	AAGCTT	2 cut(s)	395, 409
HinfI	GANTC	5 cut(s)	15, 116, 419, 866, 946
HpaII	CCGG	2 cut(s)	508, 710
HphI	GGTGA	4 cut(s)	67, 76, 125, 655
Hpy166II	GTNNAC	3 cut(s)	75, 457, 727
Hpy188I	TCNGA	4 cut(s)	121, 162, 285, 337
Hpy188III	TCNNGA	5 cut(s)	546, 648, 710, 779, 901
Hpy8I	GTNNAC	3 cut(s)	75, 457, 727
HpyAV	CCTTC	3 cut(s)	206, 757, 848
HpyCH4III	ACNGT	2 cut(s)	297, 471
HpyCH4V	TGCA	5 cut(s)	157, 365, 692, 797, 863
HpyF10VI	GCNNNNNNNGC	1 cut(s)	698
HpyF3I	CTNAG	3 cut(s)	99, 717, 738
Hsp92II	CATG	2 cut(s)	575, 690
Kpn2I	TCCGGA	1 cut(s)	709
Ksp22I	TGATCA	1 cut(s)	337
Kzo9I	GATC	2 cut(s)	337, 370
LguI	GCTCTTC	2 cut(s)	316, 809
LmnI	GCTCC	2 cut(s)	45, 712
Lsp1109I	GCAGC	2 cut(s)	685, 920
LweI	GCATC	3 cut(s)	166, 352, 806
MaeI	CTAG	3 cut(s)	12, 878, 964
MaeIII	GTNAC	3 cut(s)	64, 661, 779
MalI	GATC	2 cut(s)	339, 372
MboI	GATC	2 cut(s)	337, 370
MboII	GAAGA	7 cut(s)	19, 303, 493, 503, 769, 772, 826
MfeI	CAATTG	1 cut(s)	801
MhlI	GDGCHC	1 cut(s)	267
MluCI	AATT	3 cut(s)	433, 528, 801
MlyI	GAGTC	2 cut(s)	860, 955
MmeI	TCCRAC	1 cut(s)	270
MnlI	CCTC	6 cut(s)	46, 74, 241, 247, 357, 884
MroI	TCCGGA	1 cut(s)	709
MseI	TTAA	2 cut(s)	576, 600
MspA1I	CMGCKG	2 cut(s)	209, 317
MspI	CCGG	2 cut(s)	508, 710
MspR9I	CCNGG	2 cut(s)	111, 848
MunI	CAATTG	1 cut(s)	801
MvaI	CCWGG	2 cut(s)	111, 848
MwoI	GCNNNNNNNGC	1 cut(s)	698
NdeII	GATC	2 cut(s)	337, 370
NlaIII	CATG	2 cut(s)	575, 690
NlaIV	GGNNCC	2 cut(s)	41, 714
NmuCI	GTSAC	3 cut(s)	64, 661, 779
NspI	RCATGY	1 cut(s)	690
PciSI	GCTCTTC	2 cut(s)	316, 809
PfeI	GAWTC	3 cut(s)	15, 116, 419
PinAI	ACCGGT	1 cut(s)	507
PkrI	GCNGC	3 cut(s)	524, 700, 910
PleI	GAGTC	2 cut(s)	860, 954
PpsI	GAGTC	2 cut(s)	860, 954
Psp6I	CCWGG	2 cut(s)	109, 846
PspGI	CCWGG	2 cut(s)	109, 846
PspN4I	GGNNCC	2 cut(s)	41, 714
PspPI	GGNCC	1 cut(s)	467
PvuII	CAGCTG	2 cut(s)	209, 317
RsaI	GTAC	1 cut(s)	299
RsaNI	GTAC	1 cut(s)	298
SapI	GCTCTTC	2 cut(s)	316, 809
SaqAI	TTAA	2 cut(s)	576, 600
SatI	GCNGC	3 cut(s)	523, 699, 909
Sau3AI	GATC	2 cut(s)	337, 370
Sau96I	GGNCC	1 cut(s)	467
SchI	GAGTC	2 cut(s)	860, 955
ScrFI	CCNGG	2 cut(s)	111, 848
SduI	GDGCHC	1 cut(s)	267
SfaNI	GCATC	3 cut(s)	166, 352, 806
SinI	GGWCC	1 cut(s)	467
SmlI	CTYRAG	1 cut(s)	398
SmoI	CTYRAG	1 cut(s)	398
Sse9I	AATT	3 cut(s)	433, 528, 801
SsiI	CCGC	2 cut(s)	523, 591
SspMI	CTAG	3 cut(s)	12, 878, 964
StyD4I	CCNGG	2 cut(s)	109, 846
TaaI	ACNGT	2 cut(s)	297, 471
TaqI	TCGA	2 cut(s)	417, 852
TaqII	GACCGA	2 cut(s)	374, 557
TasI	AATT	3 cut(s)	433, 528, 801
TatI	WGTACW	1 cut(s)	297
TauI	GCSGC	1 cut(s)	525
TfiI	GAWTC	3 cut(s)	15, 116, 419
Tru1I	TTAA	2 cut(s)	576, 600
Tru9I	TTAA	2 cut(s)	576, 600
TseFI	GTSAC	3 cut(s)	64, 661, 779
TseI	GCWGC	2 cut(s)	698, 908
Tsp45I	GTSAC	3 cut(s)	64, 661, 779
TspDTI	ATGAA	2 cut(s)	7, 630
TspGWI	ACGGA	1 cut(s)	149
VpaK11BI	GGWCC	1 cut(s)	467
XagI	CCTNNNNNAGG	1 cut(s)	47
XceI	RCATGY	1 cut(s)	690
XmiI	GTMKAC	1 cut(s)	456
XspI	CTAG	3 cut(s)	12, 878, 964

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.