Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005321.1

Orthogroup ID

OG0008555

Physical Location & Seq

Genomic Coordinates Forward (+)

27928 .. 28804

Gene Structure 877 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005321.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

atgaaaaccgtcgtcgttcgatgttgcagtcgccgaaactctctcaccctagaagaaactaataagtccaccacctgtcaggcaacgtccaccacacgccgatgcaaccagaagccaccatcgacgctggaacatcgctggacaagccaaagcaacaaaactctgttttccaaccctaggttttcctccaaatatcgcggagtaaagacaaccaacaaccatatatttaaatcccaagatttctttgttttgcaggatttagcaaccgcatttattaaggttcttggtaatgaaaaggccagcaaggaagtgttcaacatctctggagaaaaatatgtcacctttgatggattagcaaaagcatgtgcaaatgctgctggatttcctgagcctgagattgttcactataaccctaaggagtttgactttgggaagaagaaggcatttccatttcgtgaccggcatttctttgcatcgattgataaagcgaagagcgtgattgggtggaaacccgaatatggcctggtcgaaggtcttgcagactcctacaacctagactttggcagagggacattcaggaaagcagctgatttttcaacagatgacatcattcttggcaagagtcttgttctccaaagctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000427 GO:0000428 GO:0001101 GO:0001871 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005777 GO:0005840 GO:0005911 GO:0005975 GO:0005996 GO:0006139 GO:0006355 GO:0006364 GO:0006396 GO:0006412 GO:0006417 GO:0006518 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0007154 GO:0007623 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009628 GO:0009657 GO:0009658 GO:0009889 GO:0009891 GO:0009893 GO:0009941 GO:0009987 GO:0009991 GO:0010035 GO:0010287 GO:0010297 GO:0010319 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0016020 GO:0016043 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0019538 GO:0022613 GO:0030054 GO:0030246 GO:0030247 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031668 GO:0031967 GO:0031975 GO:0032268 GO:0032270 GO:0032544 GO:0032991 GO:0033554 GO:0034248 GO:0034250 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0042254 GO:0042579 GO:0042631 GO:0042742 GO:0043043 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045727 GO:0045893 GO:0045935 GO:0046483 GO:0048046 GO:0048511 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0060255 GO:0061695 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0098542 GO:0104004 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901700 GO:1901701 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:1990904 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase

Protein Analysis

213

Amino Acids

24.02

Weight (kDa)

9.49

Isoelectric Point (pI)

43.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008555)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09340 AT1G09340
fragaria_vesca	FvH4_6g07910 FvH4_6g07910 FvH4_6g07910
malus_domestica	MD04G1191000.v1.1 MD12G1203600.v1.1
prunus_persica	Prupe.6G309500_v2.0.a1
pyrus_communis	pycom12g19030
rosa_chinensis	RchiOBHm_Chr3g0457611
rosa_laevigata	RLG00000025204 RLG00000025205
rosa_multiflora	Rmu_sc0005321.1_g000007 Rmu_sc0005321.1_g000009 Rmu_sc0007395.1_g000009 Rmu_sc0007395.1_g000012
rosa_roxburghii	Rroxscaffold_6G00421680
rosa_rugosa	Rorug03G0022100.1
rosa_samantha	Rh3BG084800 Rh3CG085000 Rh3DG086200 Rh3DG086300
rosa_wichuraiana	Rw3G007090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	198
AciI	CCGC	2 cut(s)	198, 267
AfiI	CCNNNNNNNGG	2 cut(s)	177, 518
AgsI	TTSAA	2 cut(s)	316, 597
AjnI	CCWGG	1 cut(s)	522
AluBI	AGCT	2 cut(s)	587, 639
AluI	AGCT	2 cut(s)	587, 639
AoxI	GGCC	2 cut(s)	297, 520
ApeKI	GCWGC	2 cut(s)	374, 584
AspA2I	CCTAGG	1 cut(s)	176
AsuHPI	GGTGA	2 cut(s)	37, 331
AvrII	CCTAGG	1 cut(s)	176
AxyI	CCTNAGG	1 cut(s)	414
BbvI	GCAGC	2 cut(s)	361, 596
BccI	CCATC	2 cut(s)	127, 341
BcgI	CGANNNNNNTGC	2 cut(s)	518, 552
BciT130I	CCWGG	1 cut(s)	524
BfaI	CTAG	4 cut(s)	50, 177, 554, 640
BisI	GCNGC	2 cut(s)	375, 585
BlnI	CCTAGG	1 cut(s)	176
BlsI	GCNGC	2 cut(s)	376, 586
Bme1390I	CCNGG	1 cut(s)	524
BmrFI	CCNGG	1 cut(s)	524
BmsI	GCATC	2 cut(s)	92, 482
BpmI	CTGGAG	1 cut(s)	345
Bpu10I	CCTNAGC	1 cut(s)	387
Bsa29I	ATCGAT	1 cut(s)	476
BsaJI	CCNNGG	1 cut(s)	176
Bsc4I	CCNNNNNNNGG	2 cut(s)	177, 518
Bse118I	RCCGGY	1 cut(s)	459
Bse21I	CCTNAGG	1 cut(s)	414
BseBI	CCWGG	1 cut(s)	524
BseCI	ATCGAT	1 cut(s)	476
BseDI	CCNNGG	1 cut(s)	176
BseLI	CCNNNNNNNGG	2 cut(s)	177, 518
BseMII	CTCAG	2 cut(s)	378, 384
BseXI	GCAGC	2 cut(s)	361, 596
Bsh1236I	CGCG	1 cut(s)	198
BshFI	GGCC	2 cut(s)	299, 522
BshVI	ATCGAT	1 cut(s)	476
BsiSI	CCGG	1 cut(s)	460
BslFI	GGGAC	1 cut(s)	583
BslI	CCNNNNNNNGG	2 cut(s)	177, 518
BsmFI	GGGAC	1 cut(s)	583
BsnI	GGCC	2 cut(s)	299, 522
BspACI	CCGC	2 cut(s)	198, 267
BspANI	GGCC	2 cut(s)	299, 522
BspCNI	CTCAG	2 cut(s)	379, 385
BspDI	ATCGAT	1 cut(s)	476
BspFNI	CGCG	1 cut(s)	198
BspQI	GCTCTTC	1 cut(s)	485
BsrFI	RCCGGY	1 cut(s)	459
BssAI	RCCGGY	1 cut(s)	459
BssECI	CCNNGG	1 cut(s)	176
BssT1I	CCWWGG	1 cut(s)	176
Bst2UI	CCWGG	1 cut(s)	524
Bst4CI	ACNGT	1 cut(s)	10
Bst6I	CTCTTC	1 cut(s)	485
BstAPI	GCANNNNNTGC	1 cut(s)	374
BstC8I	GCNNGC	1 cut(s)	301
BstDEI	CTNAG	3 cut(s)	387, 393, 414
BstFNI	CGCG	1 cut(s)	198
BstMWI	GCNNNNNNNGC	2 cut(s)	144, 374
BstNI	CCWGG	1 cut(s)	524
BstNSI	RCATGY	1 cut(s)	366
BstSCI	CCNGG	1 cut(s)	522
BstUI	CGCG	1 cut(s)	198
BstV1I	GCAGC	2 cut(s)	361, 596
Bsu15I	ATCGAT	1 cut(s)	476
Bsu36I	CCTNAGG	1 cut(s)	414
BsuRI	GGCC	2 cut(s)	299, 522
BsuTUI	ATCGAT	1 cut(s)	476
BtgZI	GCGATG	1 cut(s)	119
Cac8I	GCNNGC	1 cut(s)	301
Cfr10I	RCCGGY	1 cut(s)	459
ClaI	ATCGAT	1 cut(s)	476
CseI	GACGC	1 cut(s)	133
CviAII	CATG	1 cut(s)	363
CviJI	RGCY	7 cut(s)	115, 147, 299, 391, 522, 587, 639
CviKI_1	RGCY	7 cut(s)	115, 147, 299, 391, 522, 587, 639
DdeI	CTNAG	3 cut(s)	387, 393, 414
DraI	TTTAAA	1 cut(s)	229
Eam1104I	CTCTTC	1 cut(s)	485
EarI	CTCTTC	1 cut(s)	485
Eco130I	CCWWGG	1 cut(s)	176
Eco81I	CCTNAGG	1 cut(s)	414
EcoRII	CCWGG	1 cut(s)	522
EcoT14I	CCWWGG	1 cut(s)	176
ErhI	CCWWGG	1 cut(s)	176
FaeI	CATG	1 cut(s)	366
FaiI	YATR	6 cut(s)	222, 224, 336, 364, 408, 519
FaqI	GGGAC	1 cut(s)	583
FatI	CATG	1 cut(s)	362
Fnu4HI	GCNGC	2 cut(s)	375, 585
Fsp4HI	GCNGC	2 cut(s)	375, 585
FspBI	CTAG	4 cut(s)	50, 177, 554, 640
GluI	GCNGC	2 cut(s)	375, 585
GsuI	CTGGAG	1 cut(s)	345
HaeIII	GGCC	2 cut(s)	299, 522
HapII	CCGG	1 cut(s)	460
HgaI	GACGC	1 cut(s)	133
Hin1II	CATG	1 cut(s)	366
HinfI	GANTC	2 cut(s)	542, 622
HpaII	CCGG	1 cut(s)	460
HphI	GGTGA	2 cut(s)	37, 331
Hpy166II	GTNNAC	3 cut(s)	69, 90, 403
Hpy188III	TCNNGA	4 cut(s)	324, 386, 455, 577
Hpy8I	GTNNAC	3 cut(s)	69, 90, 403
Hpy99I	CGWCG	3 cut(s)	14, 17, 127
HpyAV	CCTTC	2 cut(s)	433, 524
HpyCH4III	ACNGT	1 cut(s)	10
HpyCH4IV	ACGT	1 cut(s)	86
HpyCH4V	TGCA	6 cut(s)	27, 105, 253, 368, 473, 539
HpyF10VI	GCNNNNNNNGC	2 cut(s)	144, 374
HpyF3I	CTNAG	3 cut(s)	387, 393, 414
HpySE526I	ACGT	1 cut(s)	86
Hsp92II	CATG	1 cut(s)	366
LguI	GCTCTTC	1 cut(s)	485
Lsp1109I	GCAGC	2 cut(s)	361, 596
LweI	GCATC	2 cut(s)	92, 482
MaeI	CTAG	4 cut(s)	50, 177, 554, 640
MaeII	ACGT	1 cut(s)	86
MaeIII	GTNAC	2 cut(s)	337, 455
MboII	GAAGA	4 cut(s)	65, 445, 448, 502
MlyI	GAGTC	2 cut(s)	536, 631
MmeI	TCCRAC	1 cut(s)	195
MnlI	CCTC	2 cut(s)	196, 560
MseI	TTAA	2 cut(s)	228, 276
MslI	CAYNNNNRTG	1 cut(s)	100
MspA1I	CMGCKG	1 cut(s)	587
MspI	CCGG	1 cut(s)	460
MspR9I	CCNGG	1 cut(s)	524
MvaI	CCWGG	1 cut(s)	524
MvnI	CGCG	1 cut(s)	198
MwoI	GCNNNNNNNGC	2 cut(s)	144, 374
NlaIII	CATG	1 cut(s)	366
NmuCI	GTSAC	2 cut(s)	337, 455
NspI	RCATGY	1 cut(s)	366
PciSI	GCTCTTC	1 cut(s)	485
PkrI	GCNGC	2 cut(s)	376, 586
PleI	GAGTC	2 cut(s)	536, 630
PpsI	GAGTC	2 cut(s)	536, 630
Psp6I	CCWGG	1 cut(s)	522
PspGI	CCWGG	1 cut(s)	522
PvuII	CAGCTG	1 cut(s)	587
RseI	CAYNNNNRTG	1 cut(s)	100
SapI	GCTCTTC	1 cut(s)	485
SaqAI	TTAA	2 cut(s)	228, 276
SatI	GCNGC	2 cut(s)	375, 585
SchI	GAGTC	2 cut(s)	536, 631
ScrFI	CCNGG	1 cut(s)	524
SetI	ASST	9 cut(s)	77, 89, 182, 282, 344, 535, 555, 589, 641
SfaNI	GCATC	2 cut(s)	92, 482
SmiI	ATTTAAAT	1 cut(s)	229
SmiMI	CAYNNNNRTG	1 cut(s)	100
SsiI	CCGC	2 cut(s)	198, 267
SspMI	CTAG	4 cut(s)	50, 177, 554, 640
StyD4I	CCNGG	1 cut(s)	522
StyI	CCWWGG	1 cut(s)	176
SwaI	ATTTAAAT	1 cut(s)	229
TaaI	ACNGT	1 cut(s)	10
TaiI	ACGT	1 cut(s)	89
TaqI	TCGA	4 cut(s)	19, 122, 476, 528
Tru1I	TTAA	2 cut(s)	228, 276
Tru9I	TTAA	2 cut(s)	228, 276
TseFI	GTSAC	2 cut(s)	337, 455
TseI	GCWGC	2 cut(s)	374, 584
Tsp45I	GTSAC	2 cut(s)	337, 455
TspDTI	ATGAA	2 cut(s)	17, 306
XceI	RCATGY	1 cut(s)	366
XmaJI	CCTAGG	1 cut(s)	176
XspI	CTAG	4 cut(s)	50, 177, 554, 640

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.