Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007366

Physical Location & Seq

Genomic Coordinates Reverse (-)

3159125 .. 3161692

Gene Structure 2568 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G09760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGTGAAGCTCACGGCTGATTTGATCTGGAAAAGTCCTCACTTCTTCAATGCTATCAAGGAGCGAGAATTGGATCTACGAGGTAACAAGATTCCTGTAATCGAAAACTTGGGTGCTACTGAGGACCAGTTCGATACCATTGATCTGTCTGATAACGAGATAGTTAAGCTAGAAAACTTCCCATACCTCAACCGTTTAGGAACTTTACTCATCAATAACAATCGTATCACCCGGATAAATCCTAACCTTGGAGAATTCCTACCGAAGCTTCACTCTTTGGTTCTTACAAATAACAGGCTTGTGAATTTGGTTGAGATTGATCCCCTTGCCTCCATTCCCAAGCTGCAGTACCTTAGTTTGTTGGATAATAATATCACCAAAAAGGCAAATTATCGCCTTTATGTGATTCACAAGCTAAAATCACTTCGAGTACTGGATTTCATTAAAATCAAAGCCAAGGAGAGAGCTGAAGCTGCATCTTTGTTTTCATCCAAAGAAGCAGAAGAGGAAGTTAAAAAGGTTTCTCGGGAGGAGGTTAAAAAAGTGTCAGAAACTGCAGAAAATCCAGAGACTCCGAAAGTGGTGGCGCCAACAGCGGAGCAAATATTAGCTATCAAGGCTGCAATTATCAATTCTCAGACGATAGAAGAAATTGCCAGACTCGAACAGGCTTTGAAGTTTGGACAGGTTCCTGCTGGCCTGATAATTCCTGATCCGGCCACAAATGACTCTGCTCCCATGGAGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008380 GO:0009266 GO:0009409 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0010467 GO:0015030 GO:0016070 GO:0016071 GO:0016604 GO:0031974 GO:0031981 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050896 GO:0070013 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

LRR_9

Protein Analysis

249

Amino Acids

28.04

Weight (kDa)

5.82

Isoelectric Point (pI)

32.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_9	PF14580	1 - 174	5.6e-83	Leucine-rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007366)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09760
fragaria_vesca	FvH4_4g21991
malus_domestica	MD13G1135200.v1.1 MD16G1130900.v1.1
prunus_persica	Prupe.1G210100_v2.0.a1
pyrus_communis	pycom13g11800 pycom16g11540
rosa_chinensis	RchiOBHm_Chr4g0428191
rosa_laevigata	RLG00000007171
rosa_multiflora	Rmu_sc0000744.1_g000083 Rmu_sc0004940.1_g000005 Rmu_sc0005142.1_g000001 Rmu_sc0009599.1_g000004
rosa_roxburghii	Rroxscaffold_5G00369920
rosa_rugosa	Rorug04G0182200 Rorug04G0182300 Rorug04G0182400 Rorug04G0182500 Rorug04G0223400 Rorug04G0223500
rosa_samantha	Rh4AG280700 Rh4BG286200 Rh4CG301900
rosa_wichuraiana	Rw4G020900 Rw4G024380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	586
AciI	CCGC	1 cut(s)	596
AclWI	GGATC	3 cut(s)	81, 314, 707
AcoI	YGGCCR	1 cut(s)	717
AcsI	RAATTY	2 cut(s)	254, 304
AcuI	CTGAAG	1 cut(s)	489
AcyI	GRCGYC	1 cut(s)	587
AfaI	GTAC	2 cut(s)	350, 432
AfiI	CCNNNNNNNGG	1 cut(s)	248
AgsI	TTSAA	2 cut(s)	49, 676
AluBI	AGCT	8 cut(s)	10, 169, 268, 343, 415, 467, 473, 611
AluI	AGCT	8 cut(s)	10, 169, 268, 343, 415, 467, 473, 611
Alw26I	GTCTC	1 cut(s)	563
AlwI	GGATC	3 cut(s)	81, 314, 707
AlwNI	CAGNNNCTG	1 cut(s)	554
Ama87I	CYCGRG	1 cut(s)	525
AoxI	GGCC	2 cut(s)	697, 717
ApeKI	GCWGC	3 cut(s)	343, 473, 620
ApoI	RAATTY	2 cut(s)	254, 304
AspLEI	GCGC	1 cut(s)	589
AspS9I	GGNCC	1 cut(s)	124
AsuC2I	CCSGG	1 cut(s)	232
AsuHPI	GGTGA	3 cut(s)	16, 220, 367
AvaI	CYCGRG	1 cut(s)	525
AvaII	GGWCC	1 cut(s)	124
BaeI	ACNNNNGTAYC	2 cut(s)	208, 241
BanI	GGYRCC	1 cut(s)	586
BbvI	GCAGC	3 cut(s)	330, 460, 607
BceAI	ACGGC	1 cut(s)	30
BcnI	CCSGG	1 cut(s)	232
BcoDI	GTCTC	1 cut(s)	563
BfaI	CTAG	1 cut(s)	170
BfmI	CTRYAG	2 cut(s)	344, 555
BfoI	RGCGCY	1 cut(s)	590
BisI	GCNGC	3 cut(s)	344, 474, 621
BlsI	GCNGC	3 cut(s)	345, 475, 622
BmcAI	AGTACT	1 cut(s)	432
Bme1390I	CCNGG	1 cut(s)	232
Bme18I	GGWCC	1 cut(s)	124
BmeT110I	CYCGRG	1 cut(s)	525
BmgT120I	GGNCC	1 cut(s)	124
BmiI	GGNNCC	2 cut(s)	588, 690
BmrFI	CCNGG	1 cut(s)	232
BmsI	GCATC	1 cut(s)	485
BpuMI	CCSGG	1 cut(s)	232
BsaHI	GRCGYC	1 cut(s)	587
BsaJI	CCNNGG	3 cut(s)	247, 456, 738
Bsc4I	CCNNNNNNNGG	1 cut(s)	248
Bse1I	ACTGG	2 cut(s)	127, 438
BseDI	CCNNGG	3 cut(s)	247, 456, 738
BseGI	GGATG	1 cut(s)	488
BseLI	CCNNNNNNNGG	1 cut(s)	248
BseMII	CTCAG	2 cut(s)	111, 650
BseNI	ACTGG	2 cut(s)	127, 438
BseRI	GAGGAG	1 cut(s)	545
BseXI	GCAGC	3 cut(s)	330, 460, 607
BshFI	GGCC	2 cut(s)	699, 719
BshNI	GGYRCC	1 cut(s)	586
BsiHKCI	CYCGRG	1 cut(s)	525
BsiSI	CCGG	2 cut(s)	232, 716
BslI	CCNNNNNNNGG	1 cut(s)	248
BsmAI	GTCTC	1 cut(s)	563
BsnI	GGCC	2 cut(s)	699, 719
BsoBI	CYCGRG	1 cut(s)	525
Bsp143I	GATC	5 cut(s)	24, 73, 142, 319, 712
Bsp19I	CCATGG	1 cut(s)	738
BspACI	CCGC	1 cut(s)	596
BspANI	GGCC	2 cut(s)	699, 719
BspCNI	CTCAG	2 cut(s)	112, 649
BspLI	GGNNCC	2 cut(s)	588, 690
BspMAI	CTGCAG	2 cut(s)	348, 559
BspPI	GGATC	3 cut(s)	81, 314, 707
BspT107I	GGYRCC	1 cut(s)	586
BsrI	ACTGG	2 cut(s)	127, 438
BssECI	CCNNGG	3 cut(s)	247, 456, 738
BssMI	GATC	5 cut(s)	24, 73, 142, 319, 712
BssNI	GRCGYC	1 cut(s)	587
BssT1I	CCWWGG	3 cut(s)	247, 456, 738
Bst4CI	ACNGT	1 cut(s)	194
Bst6I	CTCTTC	1 cut(s)	498
BstACI	GRCGYC	1 cut(s)	587
BstC8I	GCNNGC	1 cut(s)	697
BstDEI	CTNAG	3 cut(s)	120, 353, 636
BstDSI	CCRYGG	1 cut(s)	738
BstF5I	GGATG	1 cut(s)	488
BstH2I	RGCGCY	1 cut(s)	590
BstHHI	GCGC	1 cut(s)	589
BstKTI	GATC	5 cut(s)	27, 76, 145, 322, 715
BstMAI	GTCTC	1 cut(s)	563
BstMBI	GATC	5 cut(s)	24, 73, 142, 319, 712
BstMWI	GCNNNNNNNGC	3 cut(s)	473, 593, 617
BstSCI	CCNGG	1 cut(s)	230
BstSFI	CTRYAG	2 cut(s)	344, 555
BstV1I	GCAGC	3 cut(s)	330, 460, 607
BstX2I	RGATCY	1 cut(s)	73
BstYI	RGATCY	1 cut(s)	73
BsuRI	GGCC	2 cut(s)	699, 719
BtgI	CCRYGG	1 cut(s)	738
BtsCI	GGATG	1 cut(s)	488
Cac8I	GCNNGC	1 cut(s)	697
CaiI	CAGNNNCTG	1 cut(s)	554
CfoI	GCGC	1 cut(s)	589
Cfr13I	GGNCC	1 cut(s)	124
Csp6I	GTAC	2 cut(s)	349, 431
CviAII	CATG	1 cut(s)	739
CviQI	GTAC	2 cut(s)	349, 431
DdeI	CTNAG	3 cut(s)	120, 353, 636
DinI	GGCGCC	1 cut(s)	588
DpnI	GATC	5 cut(s)	26, 75, 144, 321, 714
DpnII	GATC	5 cut(s)	24, 73, 142, 319, 712
EaeI	YGGCCR	1 cut(s)	717
Eam1104I	CTCTTC	1 cut(s)	498
EarI	CTCTTC	1 cut(s)	498
Eco130I	CCWWGG	3 cut(s)	247, 456, 738
Eco47I	GGWCC	1 cut(s)	124
Eco57I	CTGAAG	1 cut(s)	489
Eco88I	CYCGRG	1 cut(s)	525
EcoRI	GAATTC	1 cut(s)	254
EcoT14I	CCWWGG	3 cut(s)	247, 456, 738
EgeI	GGCGCC	1 cut(s)	588
EheI	GGCGCC	1 cut(s)	588
ErhI	CCWWGG	3 cut(s)	247, 456, 738
FaeI	CATG	1 cut(s)	742
FaiI	YATR	3 cut(s)	184, 402, 740
FatI	CATG	1 cut(s)	738
Fnu4HI	GCNGC	3 cut(s)	344, 474, 621
FokI	GGATG	1 cut(s)	475
Fsp4HI	GCNGC	3 cut(s)	344, 474, 621
FspBI	CTAG	1 cut(s)	170
GlaI	GCGC	1 cut(s)	588
GluI	GCNGC	3 cut(s)	344, 474, 621
HaeII	RGCGCY	1 cut(s)	590
HaeIII	GGCC	2 cut(s)	699, 719
HapII	CCGG	2 cut(s)	232, 716
HhaI	GCGC	1 cut(s)	589
Hin1I	GRCGYC	1 cut(s)	587
Hin1II	CATG	1 cut(s)	742
Hin6I	GCGC	1 cut(s)	587
HinP1I	GCGC	1 cut(s)	587
HindIII	AAGCTT	1 cut(s)	266
HinfI	GANTC	5 cut(s)	91, 406, 571, 660, 728
HpaII	CCGG	2 cut(s)	232, 716
HphI	GGTGA	3 cut(s)	16, 220, 367
Hpy188I	TCNGA	4 cut(s)	151, 550, 576, 639
Hpy188III	TCNNGA	4 cut(s)	28, 527, 566, 710
HpyCH4III	ACNGT	1 cut(s)	194
HpyCH4V	TGCA	4 cut(s)	346, 476, 557, 623
HpyF10VI	GCNNNNNNNGC	3 cut(s)	473, 593, 617
HpyF3I	CTNAG	3 cut(s)	120, 353, 636
Hsp92I	GRCGYC	1 cut(s)	587
Hsp92II	CATG	1 cut(s)	742
HspAI	GCGC	1 cut(s)	587
KasI	GGCGCC	1 cut(s)	586
Kzo9I	GATC	5 cut(s)	24, 73, 142, 319, 712
LmnI	GCTCC	3 cut(s)	61, 598, 739
Lsp1109I	GCAGC	3 cut(s)	330, 460, 607
LweI	GCATC	1 cut(s)	485
MaeI	CTAG	1 cut(s)	170
MaeIII	GTNAC	1 cut(s)	83
MalI	GATC	5 cut(s)	26, 75, 144, 321, 714
MboI	GATC	5 cut(s)	24, 73, 142, 319, 712
MboII	GAAGA	3 cut(s)	37, 515, 659
MflI	RGATCY	1 cut(s)	73
MluCI	AATT	8 cut(s)	68, 254, 304, 388, 624, 631, 651, 705
Mly113I	GGCGCC	1 cut(s)	587
MlyI	GAGTC	3 cut(s)	565, 654, 722
MmeI	TCCRAC	1 cut(s)	342
MnlI	CCTC	9 cut(s)	48, 74, 115, 197, 340, 499, 523, 526, 736
MseI	TTAA	4 cut(s)	165, 444, 513, 537
MspA1I	CMGCKG	1 cut(s)	596
MspI	CCGG	2 cut(s)	232, 716
MspR9I	CCNGG	1 cut(s)	232
MwoI	GCNNNNNNNGC	3 cut(s)	473, 593, 617
NarI	GGCGCC	1 cut(s)	587
NciI	CCSGG	1 cut(s)	232
NcoI	CCATGG	1 cut(s)	738
NdeII	GATC	5 cut(s)	24, 73, 142, 319, 712
NlaIII	CATG	1 cut(s)	742
NlaIV	GGNNCC	2 cut(s)	588, 690
PfeI	GAWTC	2 cut(s)	91, 406
PkrI	GCNGC	3 cut(s)	345, 475, 622
PleI	GAGTC	3 cut(s)	565, 654, 722
PluTI	GGCGCC	1 cut(s)	590
PpsI	GAGTC	3 cut(s)	565, 654, 722
PspN4I	GGNNCC	2 cut(s)	588, 690
PspPI	GGNCC	1 cut(s)	124
PstI	CTGCAG	2 cut(s)	348, 559
PstNI	CAGNNNCTG	1 cut(s)	554
PsuI	RGATCY	1 cut(s)	73
RsaI	GTAC	2 cut(s)	350, 432
RsaNI	GTAC	2 cut(s)	349, 431
SaqAI	TTAA	4 cut(s)	165, 444, 513, 537
SatI	GCNGC	3 cut(s)	344, 474, 621
Sau3AI	GATC	5 cut(s)	24, 73, 142, 319, 712
Sau96I	GGNCC	1 cut(s)	124
ScaI	AGTACT	1 cut(s)	432
SchI	GAGTC	3 cut(s)	565, 654, 722
ScrFI	CCNGG	1 cut(s)	232
SfaNI	GCATC	1 cut(s)	485
SfcI	CTRYAG	2 cut(s)	344, 555
SfoI	GGCGCC	1 cut(s)	588
SinI	GGWCC	1 cut(s)	124
Sse9I	AATT	8 cut(s)	68, 254, 304, 388, 624, 631, 651, 705
SsiI	CCGC	1 cut(s)	596
SspDI	GGCGCC	1 cut(s)	586
SspI	AATATT	1 cut(s)	606
SspMI	CTAG	1 cut(s)	170
StyD4I	CCNGG	1 cut(s)	230
StyI	CCWWGG	3 cut(s)	247, 456, 738
TaaI	ACNGT	1 cut(s)	194
TaqI	TCGA	4 cut(s)	102, 132, 427, 663
TasI	AATT	8 cut(s)	68, 254, 304, 388, 624, 631, 651, 705
TatI	WGTACW	1 cut(s)	430
TfiI	GAWTC	2 cut(s)	91, 406
Tru1I	TTAA	4 cut(s)	165, 444, 513, 537
Tru9I	TTAA	4 cut(s)	165, 444, 513, 537
TseI	GCWGC	3 cut(s)	343, 473, 620
TspDTI	ATGAA	2 cut(s)	430, 477
VpaK11BI	GGWCC	1 cut(s)	124
XapI	RAATTY	2 cut(s)	254, 304
XspI	CTAG	1 cut(s)	170
ZrmI	AGTACT	1 cut(s)	432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.