Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0007366

Physical Location & Seq

Genomic Coordinates Reverse (-)

31858525 .. 31864791

Gene Structure 6267 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0182200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGAACTTGGGCAACCCCAATAACCCAAGTGCTCCCTCACCACCACCTCAACTCAACCTCCAACAAGCCTTCACCTCCCTCCAAAACCACTGCTCTGGTTTCCTCCACCACCTCTCTCATCTCCCTCTCTTCAACCCCAACCCTTCTTCTCTCCAAACCCACCTCCAATCATCCCTCTCCAACCTCCAAAACCAAGCCAAACACGCATTCCATGCCGGGTTTTCGGGCTTTGATTCCTCCAAGCAGAACCCAGTTTGGGCTCGAATTGCTGTAAACAACAAAACCCAGTTCCCGAATTCTAGTGGCGATGGGCCCGGAGCTGCCATGTCGACCGAGGCCATCGAGGAGCGGCTGGCCGGCGTGCCGGTTTATGCTCTGAGCAATGCGGCTGAGGAATTCGTGTTGGTTTCGGGTGCTTCGAGCGGGAAGAGTCTTGGGTTGTTTTGTTTCAAGAAGGAGGACGCGGAGTCACTGCTTGAGCATATTAGAGTTATGGACCCCGGAATGCGAAGCGGGTCCAAAGTTGTGGCTGTGGCTTTGAATAAGGTTTTCCAGCTCAAGGTTGATGGGGTGGCCTTCAGGTTGGTTCCTGAGTCTTCTCAAGTCAAGAATGCGCTTAAGGAGAAGGAGAAGGAGAAGGGTGGATCTTCTGATAATGGCTTTTTTGGGGTGCCAGTTTTCCAGTCGAGGAGCTTGATTCTAAGAAGCCAAAGCAAGAGCTATCGTCCAGTATTCTTCAGGAAGGAGGATTTAGAAAACTCACTATCAAGAGCTTCTCGTGAGCAGAATCAATTAAATCCTTTACTTAGACCAGGGGACATTCAGGTGGCTGTTCTCGAGGATGTAATAAAGGGGATGAAGGAGGGTTCTACATCGGTCTGGGATGACGTTGTTTTTATCCCTCCTGGATTTGATATCTCTACTGATCCCACCAAGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008380 GO:0009266 GO:0009409 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0010467 GO:0015030 GO:0016070 GO:0016071 GO:0016604 GO:0031974 GO:0031981 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050896 GO:0070013 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

LRR_9

Protein Analysis

313

Amino Acids

34.03

Weight (kDa)

7.81

Isoelectric Point (pI)

54.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tic22	PF04278	57 - 309	9.5e-90	Tic22-like family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007366)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09760
fragaria_vesca	FvH4_4g21991
malus_domestica	MD13G1135200.v1.1 MD16G1130900.v1.1
prunus_persica	Prupe.1G210100_v2.0.a1
pyrus_communis	pycom13g11800 pycom16g11540
rosa_chinensis	RchiOBHm_Chr4g0428191
rosa_laevigata	RLG00000007171
rosa_multiflora	Rmu_sc0000744.1_g000083 Rmu_sc0004940.1_g000005 Rmu_sc0005142.1_g000001 Rmu_sc0009599.1_g000004
rosa_roxburghii	Rroxscaffold_5G00369920
rosa_rugosa	Rorug04G0182200 Rorug04G0182300 Rorug04G0182400 Rorug04G0182500 Rorug04G0223400 Rorug04G0223500
rosa_samantha	Rh4AG280700 Rh4BG286200 Rh4CG301900
rosa_wichuraiana	Rw4G020900 Rw4G024380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	670
AccBSI	CCGCTC	2 cut(s)	349, 423
AccI	GTMKAC	1 cut(s)	329
AccII	CGCG	1 cut(s)	464
AciI	CCGC	5 cut(s)	349, 386, 423, 464, 513
AclWI	GGATC	2 cut(s)	652, 920
AcoI	YGGCCR	1 cut(s)	354
AcsI	RAATTY	2 cut(s)	295, 395
AcuI	CTGAAG	2 cut(s)	562, 721
AfiI	CCNNNNNNNGG	2 cut(s)	256, 559
AflII	CTTAAG	1 cut(s)	617
AgsI	TTSAA	3 cut(s)	133, 451, 541
AhdI	GACNNNNNGTC	1 cut(s)	466
AjnI	CCWGG	2 cut(s)	811, 904
AjuI	GAANNNNNNNTTGG	2 cut(s)	191, 223
AluBI	AGCT	5 cut(s)	320, 556, 693, 720, 773
AluI	AGCT	5 cut(s)	320, 556, 693, 720, 773
Alw21I	GWGCWC	1 cut(s)	34
AlwI	GGATC	2 cut(s)	652, 920
Ama87I	CYCGRG	1 cut(s)	836
AoxI	GGCC	4 cut(s)	311, 336, 354, 573
ApaI	GGGCCC	1 cut(s)	315
ApeKI	GCWGC	1 cut(s)	320
ApoI	RAATTY	2 cut(s)	295, 395
AspLEI	GCGC	1 cut(s)	616
AspS9I	GGNCC	4 cut(s)	311, 312, 496, 516
AsuC2I	CCSGG	3 cut(s)	217, 315, 501
AsuHPI	GGTGA	2 cut(s)	30, 64
AvaI	CYCGRG	1 cut(s)	836
AvaII	GGWCC	2 cut(s)	496, 516
BaeGI	GKGCMC	1 cut(s)	315
BanI	GGYRCC	1 cut(s)	670
BanII	GRGCYC	2 cut(s)	262, 315
BauI	CACGAG	1 cut(s)	777
BbsI	GAAGAC	1 cut(s)	588
Bbv12I	GWGCWC	1 cut(s)	34
BbvCI	CCTCAGC	1 cut(s)	390
BbvI	GCAGC	1 cut(s)	307
BccI	CCATC	3 cut(s)	302, 347, 560
BciT130I	CCWGG	2 cut(s)	813, 906
BcnI	CCSGG	3 cut(s)	217, 315, 501
BfaI	CTAG	1 cut(s)	300
BfrI	CTTAAG	1 cut(s)	617
BisI	GCNGC	3 cut(s)	321, 350, 387
BlsI	GCNGC	3 cut(s)	322, 351, 388
Bme1390I	CCNGG	5 cut(s)	217, 315, 501, 813, 906
Bme18I	GGWCC	2 cut(s)	496, 516
BmeRI	GACNNNNNGTC	1 cut(s)	466
BmeT110I	CYCGRG	1 cut(s)	836
BmgT120I	GGNCC	4 cut(s)	311, 312, 496, 516
BmiI	GGNNCC	5 cut(s)	313, 498, 517, 588, 672
BmrFI	CCNGG	5 cut(s)	217, 315, 501, 813, 906
BmrI	ACTGGG	2 cut(s)	245, 280
BmuI	ACTGGG	2 cut(s)	245, 280
BpiI	GAAGAC	1 cut(s)	588
Bpu10I	CCTNAGC	1 cut(s)	390
BpuEI	CTTGAG	3 cut(s)	497, 542, 585
BpuMI	CCSGG	3 cut(s)	217, 315, 501
BsaJI	CCNNGG	3 cut(s)	333, 499, 812
BsaXI	ACNNNNNCTCC	2 cut(s)	42, 72
Bsc4I	CCNNNNNNNGG	2 cut(s)	256, 559
Bse118I	RCCGGY	2 cut(s)	356, 364
Bse1I	ACTGG	5 cut(s)	251, 286, 674, 682, 728
Bse3DI	GCAATG	1 cut(s)	388
BseBI	CCWGG	2 cut(s)	813, 906
BseDI	CCNNGG	3 cut(s)	333, 499, 812
BseGI	GGATG	4 cut(s)	170, 847, 861, 889
BseLI	CCNNNNNNNGG	2 cut(s)	256, 559
BseMI	GCAATG	1 cut(s)	388
BseMII	CTCAG	3 cut(s)	368, 381, 582
BseNI	ACTGG	5 cut(s)	251, 286, 674, 682, 728
BseRI	GAGGAG	2 cut(s)	359, 703
BseSI	GKGCMC	1 cut(s)	315
BseXI	GCAGC	1 cut(s)	307
Bsh1236I	CGCG	1 cut(s)	464
Bsh1285I	CGRYCG	1 cut(s)	333
BshFI	GGCC	4 cut(s)	313, 338, 356, 575
BshNI	GGYRCC	1 cut(s)	670
BsiEI	CGRYCG	1 cut(s)	333
BsiHKAI	GWGCWC	1 cut(s)	34
BsiHKCI	CYCGRG	1 cut(s)	836
BsiSI	CCGG	5 cut(s)	216, 315, 357, 365, 501
BslFI	GGGAC	1 cut(s)	830
BslI	CCNNNNNNNGG	2 cut(s)	256, 559
BsmFI	GGGAC	1 cut(s)	830
BsmI	GAATGC	3 cut(s)	206, 510, 616
BsnI	GGCC	4 cut(s)	313, 338, 356, 575
BsoBI	CYCGRG	1 cut(s)	836
Bsp120I	GGGCCC	1 cut(s)	311
Bsp1286I	GDGCHC	3 cut(s)	34, 262, 315
Bsp143I	GATC	2 cut(s)	644, 925
BspACI	CCGC	5 cut(s)	349, 386, 423, 464, 513
BspANI	GGCC	4 cut(s)	313, 338, 356, 575
BspCNI	CTCAG	3 cut(s)	369, 382, 583
BspFNI	CGCG	1 cut(s)	464
BspLI	GGNNCC	5 cut(s)	313, 498, 517, 588, 672
BspPI	GGATC	2 cut(s)	652, 920
BspT107I	GGYRCC	1 cut(s)	670
BspTI	CTTAAG	1 cut(s)	617
BsrBI	CCGCTC	2 cut(s)	349, 423
BsrDI	GCAATG	1 cut(s)	388
BsrFI	RCCGGY	2 cut(s)	356, 364
BsrI	ACTGG	5 cut(s)	251, 286, 674, 682, 728
BssAI	RCCGGY	2 cut(s)	356, 364
BssECI	CCNNGG	3 cut(s)	333, 499, 812
BssMI	GATC	2 cut(s)	644, 925
BssSI	CACGAG	1 cut(s)	777
Bst2BI	CACGAG	1 cut(s)	777
Bst2UI	CCWGG	2 cut(s)	813, 906
Bst6I	CTCTTC	2 cut(s)	134, 422
BstAFI	CTTAAG	1 cut(s)	617
BstAPI	GCANNNNNTGC	1 cut(s)	212
BstC8I	GCNNGC	3 cut(s)	354, 358, 362
BstDEI	CTNAG	5 cut(s)	377, 390, 591, 701, 806
BstF5I	GGATG	4 cut(s)	170, 847, 861, 889
BstFNI	CGCG	1 cut(s)	464
BstHHI	GCGC	1 cut(s)	616
BstKTI	GATC	2 cut(s)	647, 928
BstMBI	GATC	2 cut(s)	644, 925
BstMCI	CGRYCG	1 cut(s)	333
BstMWI	GCNNNNNNNGC	3 cut(s)	203, 212, 266
BstNI	CCWGG	2 cut(s)	813, 906
BstSCI	CCNGG	5 cut(s)	215, 313, 499, 811, 904
BstSLI	GKGCMC	1 cut(s)	315
BstUI	CGCG	1 cut(s)	464
BstV1I	GCAGC	1 cut(s)	307
BstV2I	GAAGAC	1 cut(s)	588
BstX2I	RGATCY	1 cut(s)	644
BstXI	CCANNNNNNTGG	2 cut(s)	95, 526
BstYI	RGATCY	1 cut(s)	644
BsuRI	GGCC	4 cut(s)	313, 338, 356, 575
BtgZI	GCGATG	1 cut(s)	321
BtsCI	GGATG	4 cut(s)	170, 847, 861, 889
BtsI	GCAGTG	2 cut(s)	88, 470
BtsIMutI	CAGTG	2 cut(s)	88, 470
Cac8I	GCNNGC	3 cut(s)	354, 358, 362
CfoI	GCGC	1 cut(s)	616
Cfr10I	RCCGGY	2 cut(s)	356, 364
Cfr13I	GGNCC	4 cut(s)	311, 312, 496, 516
CseI	GACGC	1 cut(s)	470
CviAII	CATG	2 cut(s)	212, 325
DdeI	CTNAG	5 cut(s)	377, 390, 591, 701, 806
DpnI	GATC	2 cut(s)	646, 927
DpnII	GATC	2 cut(s)	644, 925
DriI	GACNNNNNGTC	1 cut(s)	466
EaeI	YGGCCR	1 cut(s)	354
Eam1104I	CTCTTC	2 cut(s)	134, 422
Eam1105I	GACNNNNNGTC	1 cut(s)	466
EarI	CTCTTC	2 cut(s)	134, 422
Eco24I	GRGCYC	2 cut(s)	262, 315
Eco32I	GATATC	1 cut(s)	916
Eco47I	GGWCC	2 cut(s)	496, 516
Eco57I	CTGAAG	2 cut(s)	562, 721
Eco88I	CYCGRG	1 cut(s)	836
EcoRI	GAATTC	2 cut(s)	295, 395
EcoRII	CCWGG	2 cut(s)	811, 904
EcoRV	GATATC	1 cut(s)	916
EcoT38I	GRGCYC	2 cut(s)	262, 315
FaeI	CATG	2 cut(s)	215, 328
FaiI	YATR	5 cut(s)	213, 326, 372, 483, 494
FaqI	GGGAC	1 cut(s)	830
FatI	CATG	2 cut(s)	211, 324
FauI	CCCGC	2 cut(s)	416, 506
FblI	GTMKAC	1 cut(s)	329
Fnu4HI	GCNGC	3 cut(s)	321, 350, 387
FokI	GGATG	4 cut(s)	157, 854, 868, 896
FriOI	GRGCYC	2 cut(s)	262, 315
Fsp4HI	GCNGC	3 cut(s)	321, 350, 387
FspBI	CTAG	1 cut(s)	300
GlaI	GCGC	1 cut(s)	615
GluI	GCNGC	3 cut(s)	321, 350, 387
HaeIII	GGCC	4 cut(s)	313, 338, 356, 575
HapII	CCGG	5 cut(s)	216, 315, 357, 365, 501
HgaI	GACGC	1 cut(s)	470
HhaI	GCGC	1 cut(s)	616
Hin1II	CATG	2 cut(s)	215, 328
Hin6I	GCGC	1 cut(s)	614
HinP1I	GCGC	1 cut(s)	614
HincII	GTYRAC	1 cut(s)	330
HindII	GTYRAC	1 cut(s)	330
HinfI	GANTC	6 cut(s)	233, 430, 467, 593, 697, 787
HpaII	CCGG	5 cut(s)	216, 315, 357, 365, 501
HphI	GGTGA	2 cut(s)	30, 64
Hpy166II	GTNNAC	2 cut(s)	274, 330
Hpy188I	TCNGA	2 cut(s)	378, 652
Hpy188III	TCNNGA	8 cut(s)	292, 451, 590, 607, 739, 768, 779, 836
Hpy8I	GTNNAC	2 cut(s)	274, 330
HpyAV	CCTTC	9 cut(s)	79, 153, 448, 586, 619, 625, 631, 736, 853
HpyCH4IV	ACGT	1 cut(s)	888
HpyF10VI	GCNNNNNNNGC	3 cut(s)	203, 212, 266
HpyF3I	CTNAG	5 cut(s)	377, 390, 591, 701, 806
HpySE526I	ACGT	1 cut(s)	888
Hsp92II	CATG	2 cut(s)	215, 328
HspAI	GCGC	1 cut(s)	614
KroI	GCCGGC	1 cut(s)	356
KroNI	GCCGGC	1 cut(s)	358
Kzo9I	GATC	2 cut(s)	644, 925
LmnI	GCTCC	4 cut(s)	37, 317, 346, 690
Lsp1109I	GCAGC	1 cut(s)	307
MaeI	CTAG	1 cut(s)	300
MaeII	ACGT	1 cut(s)	888
MaeIII	GTNAC	1 cut(s)	468
MalI	GATC	2 cut(s)	646, 927
MbiI	CCGCTC	2 cut(s)	349, 423
MboI	GATC	2 cut(s)	644, 925
MboII	GAAGA	6 cut(s)	121, 138, 439, 588, 639, 727
MflI	RGATCY	1 cut(s)	644
MhlI	GDGCHC	3 cut(s)	34, 262, 315
MluCI	AATT	4 cut(s)	264, 295, 395, 791
MlyI	GAGTC	3 cut(s)	439, 476, 602
MmeI	TCCRAC	2 cut(s)	85, 204
MroNI	GCCGGC	1 cut(s)	356
MseI	TTAA	2 cut(s)	618, 794
MslI	CAYNNNNRTG	1 cut(s)	824
MspCI	CTTAAG	1 cut(s)	617
MspI	CCGG	5 cut(s)	216, 315, 357, 365, 501
MspR9I	CCNGG	5 cut(s)	217, 315, 501, 813, 906
Mva1269I	GAATGC	3 cut(s)	206, 510, 616
MvaI	CCWGG	2 cut(s)	813, 906
MvnI	CGCG	1 cut(s)	464
MwoI	GCNNNNNNNGC	3 cut(s)	203, 212, 266
NaeI	GCCGGC	1 cut(s)	358
NciI	CCSGG	3 cut(s)	217, 315, 501
NdeII	GATC	2 cut(s)	644, 925
NgoMIV	GCCGGC	1 cut(s)	356
NlaIII	CATG	2 cut(s)	215, 328
NlaIV	GGNNCC	5 cut(s)	313, 498, 517, 588, 672
NmuCI	GTSAC	1 cut(s)	468
PaeR7I	CTCGAG	1 cut(s)	836
PcsI	WCGNNNNNNNCGW	1 cut(s)	416
PctI	GAATGC	3 cut(s)	206, 510, 616
PdiI	GCCGGC	1 cut(s)	358
PfeI	GAWTC	3 cut(s)	233, 697, 787
PfoI	TCCNGGA	1 cut(s)	904
PkrI	GCNGC	3 cut(s)	322, 351, 388
PleI	GAGTC	3 cut(s)	438, 475, 601
PpsI	GAGTC	3 cut(s)	438, 475, 601
Psp6I	CCWGG	2 cut(s)	811, 904
PspGI	CCWGG	2 cut(s)	811, 904
PspN4I	GGNNCC	5 cut(s)	313, 498, 517, 588, 672
PspOMI	GGGCCC	1 cut(s)	311
PspPI	GGNCC	4 cut(s)	311, 312, 496, 516
PsuI	RGATCY	1 cut(s)	644
RseI	CAYNNNNRTG	1 cut(s)	824
SalI	GTCGAC	1 cut(s)	328
SaqAI	TTAA	2 cut(s)	618, 794
SatI	GCNGC	3 cut(s)	321, 350, 387
Sau3AI	GATC	2 cut(s)	644, 925
Sau96I	GGNCC	4 cut(s)	311, 312, 496, 516
SchI	GAGTC	3 cut(s)	439, 476, 602
ScrFI	CCNGG	5 cut(s)	217, 315, 501, 813, 906
SduI	GDGCHC	3 cut(s)	34, 262, 315
Sfr274I	CTCGAG	1 cut(s)	836
SinI	GGWCC	2 cut(s)	496, 516
SlaI	CTCGAG	1 cut(s)	836
SmiMI	CAYNNNNRTG	1 cut(s)	824
SmlI	CTYRAG	5 cut(s)	476, 557, 600, 617, 836
SmoI	CTYRAG	5 cut(s)	476, 557, 600, 617, 836
Sse9I	AATT	4 cut(s)	264, 295, 395, 791
SsiI	CCGC	5 cut(s)	349, 386, 423, 464, 513
SspMI	CTAG	1 cut(s)	300
StyD4I	CCNGG	5 cut(s)	215, 313, 499, 811, 904
TaiI	ACGT	1 cut(s)	891
TaqI	TCGA	6 cut(s)	262, 329, 342, 419, 686, 837
TaqII	GACCGA	2 cut(s)	347, 865
TasI	AATT	4 cut(s)	264, 295, 395, 791
TauI	GCSGC	2 cut(s)	352, 389
TfiI	GAWTC	3 cut(s)	233, 697, 787
Tru1I	TTAA	2 cut(s)	618, 794
Tru9I	TTAA	2 cut(s)	618, 794
TscAI	CASTG	2 cut(s)	95, 477
TseFI	GTSAC	1 cut(s)	468
TseI	GCWGC	1 cut(s)	320
Tsp45I	GTSAC	1 cut(s)	468
TspDTI	ATGAA	2 cut(s)	17, 872
TspRI	CASTG	2 cut(s)	95, 477
Vha464I	CTTAAG	1 cut(s)	617
VpaK11BI	GGWCC	2 cut(s)	496, 516
XapI	RAATTY	2 cut(s)	295, 395
XhoI	CTCGAG	1 cut(s)	836
XmiI	GTMKAC	1 cut(s)	329
XspI	CTAG	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.