Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0007366

Physical Location & Seq

Genomic Coordinates Reverse (-)

8162312 .. 8165535

Gene Structure 3224 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g11800.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGTGAGGCTGACGGCCGACTTGGTTTGGAAGAGCCCTCACTTCTTCAATGCGCTCAAGGAGCGAGAGTTGGATCTCCGAGGAAATAAGATTGCTGTAATCGAAAACTTGGGAGCTACAGAGGACCAATTTGACACCATTGATTTGTCTGACAATGAAATCGTCAAGCTCGAAAACATGCCCTATCTTAATCGTTTGGGTACTTTGATTATCAATAACAACCGAATCACCCGTATCAATCCCAACATTGGAGAGTTTTTGCCAAAGTTGCACACGTTGGTACTTACCAACAACAGGCTAGTCAACCTGGTAGAGATCGACCCTCTTGCATCCCTCCCAAAGTTGCAGTATCTTAGCCTTTTGGATAACAACATCACGAAGAAACCCAACTATAGGCTGTACTTGATTCACAAGTTAAAATCGCTTCGGGTTCTGGATTTTAAGAAGGTGAAAAACAAGGAGAGACTGGAAGCACAAACCTTGTTTTCATCAAAAGAGGTTGAAGAAGAGACTAGAAAGGTATCCCCCCAAAAATTCGTGCCTGCAGAAGTTCCAGAAGTTTCCCAGGAACAACAGGCTCCAAAAGTTGTTGCCCCCACACCTGAACAAATTATGAAAATCAAGGCTGCCATAGTGAATTCCCAGACTCTTGAAGAGGTTGCTAGACTTGAAAAGGCACTGAAGTCGGGTCAGCTTCCTGCAGATTTTGAAATTTTTGATGATGATGCTGAGCCCAATAGTGTTCAAGAAAAGGATGATAAAATGGACACAAATAATGAAAATGAGGCTATTACTGAACCTAAAGATGTGGAGGAGCAGAAGAACGATGAAGCTGAACCGATGGAACAGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008380 GO:0009266 GO:0009409 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0010467 GO:0015030 GO:0016070 GO:0016071 GO:0016604 GO:0031974 GO:0031981 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050896 GO:0070013 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

LRR_9

Protein Analysis

285

Amino Acids

32.55

Weight (kDa)

4.95

Isoelectric Point (pI)

40.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007366)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09760
fragaria_vesca	FvH4_4g21991
malus_domestica	MD13G1135200.v1.1 MD16G1130900.v1.1
prunus_persica	Prupe.1G210100_v2.0.a1
pyrus_communis	pycom13g11800 pycom16g11540
rosa_chinensis	RchiOBHm_Chr4g0428191
rosa_laevigata	RLG00000007171
rosa_multiflora	Rmu_sc0000744.1_g000083 Rmu_sc0004940.1_g000005 Rmu_sc0005142.1_g000001 Rmu_sc0009599.1_g000004
rosa_roxburghii	Rroxscaffold_5G00369920
rosa_rugosa	Rorug04G0182200 Rorug04G0182300 Rorug04G0182400 Rorug04G0182500 Rorug04G0223400 Rorug04G0223500
rosa_samantha	Rh4AG280700 Rh4BG286200 Rh4CG301900
rosa_wichuraiana	Rw4G020900 Rw4G024380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	81
AcoI	YGGCCR	1 cut(s)	15
AcsI	RAATTY	3 cut(s)	533, 637, 711
AcuI	CTGAAG	1 cut(s)	701
AfaI	GTAC	3 cut(s)	202, 282, 401
AfiI	CCNNNNNNNGG	3 cut(s)	248, 294, 393
AflIII	ACRYGT	1 cut(s)	273
AgsI	TTSAA	6 cut(s)	49, 503, 653, 671, 710, 746
AjnI	CCWGG	2 cut(s)	306, 564
AluBI	AGCT	4 cut(s)	116, 169, 694, 833
AluI	AGCT	4 cut(s)	116, 169, 694, 833
Alw26I	GTCTC	2 cut(s)	457, 503
AlwI	GGATC	1 cut(s)	81
AoxI	GGCC	1 cut(s)	15
ApeKI	GCWGC	1 cut(s)	626
ApoI	RAATTY	3 cut(s)	533, 637, 711
AspLEI	GCGC	1 cut(s)	55
AspS9I	GGNCC	1 cut(s)	124
AsuHPI	GGTGA	3 cut(s)	16, 220, 460
AvaII	GGWCC	1 cut(s)	124
BanII	GRGCYC	2 cut(s)	38, 735
BbvI	GCAGC	1 cut(s)	613
BccI	CCATC	1 cut(s)	835
BceAI	ACGGC	1 cut(s)	30
BcgI	CGANNNNNNTGC	4 cut(s)	308, 342, 666, 700
BciT130I	CCWGG	2 cut(s)	308, 566
BciVI	GTATCC	1 cut(s)	532
BcoDI	GTCTC	2 cut(s)	457, 503
BfaI	CTAG	3 cut(s)	299, 513, 663
BfmI	CTRYAG	4 cut(s)	117, 391, 543, 699
BfuI	GTATCC	1 cut(s)	532
BisI	GCNGC	1 cut(s)	627
BlpI	GCTNAGC	1 cut(s)	729
BlsI	GCNGC	1 cut(s)	628
Bme1390I	CCNGG	2 cut(s)	308, 566
Bme18I	GGWCC	1 cut(s)	124
BmgT120I	GGNCC	1 cut(s)	124
BmiI	GGNNCC	1 cut(s)	579
BmrFI	CCNGG	2 cut(s)	308, 566
BmsI	GCATC	2 cut(s)	338, 715
Bpu1102I	GCTNAGC	1 cut(s)	729
BpuEI	CTTGAG	1 cut(s)	41
BsaJI	CCNNGG	2 cut(s)	79, 564
BsaXI	ACNNNNNCTCC	2 cut(s)	53, 83
Bsc4I	CCNNNNNNNGG	3 cut(s)	248, 294, 393
Bse1I	ACTGG	1 cut(s)	471
BseBI	CCWGG	2 cut(s)	308, 566
BseDI	CCNNGG	2 cut(s)	79, 564
BseGI	GGATG	2 cut(s)	329, 760
BseLI	CCNNNNNNNGG	3 cut(s)	248, 294, 393
BseMII	CTCAG	1 cut(s)	720
BseNI	ACTGG	1 cut(s)	471
BseRI	GAGGAG	1 cut(s)	827
BseX3I	CGGCCG	1 cut(s)	15
BseXI	GCAGC	1 cut(s)	613
Bsh1285I	CGRYCG	1 cut(s)	18
BshFI	GGCC	1 cut(s)	17
BsiEI	CGRYCG	1 cut(s)	18
BslI	CCNNNNNNNGG	3 cut(s)	248, 294, 393
BsmAI	GTCTC	2 cut(s)	457, 503
BsnI	GGCC	1 cut(s)	17
Bsp1286I	GDGCHC	2 cut(s)	38, 735
Bsp143I	GATC	2 cut(s)	73, 315
Bsp1720I	GCTNAGC	1 cut(s)	729
BspANI	GGCC	1 cut(s)	17
BspCNI	CTCAG	1 cut(s)	721
BspLI	GGNNCC	1 cut(s)	579
BspMAI	CTGCAG	2 cut(s)	547, 703
BspPI	GGATC	1 cut(s)	81
BspQI	GCTCTTC	1 cut(s)	26
BsrI	ACTGG	1 cut(s)	471
BssECI	CCNNGG	2 cut(s)	79, 564
BssMI	GATC	2 cut(s)	73, 315
Bst2UI	CCWGG	2 cut(s)	308, 566
Bst6I	CTCTTC	3 cut(s)	26, 501, 648
BstC8I	GCNNGC	1 cut(s)	543
BstDEI	CTNAG	2 cut(s)	353, 729
BstF5I	GGATG	2 cut(s)	329, 760
BstHHI	GCGC	1 cut(s)	55
BstKTI	GATC	2 cut(s)	76, 318
BstMAI	GTCTC	2 cut(s)	457, 503
BstMBI	GATC	2 cut(s)	73, 315
BstMCI	CGRYCG	1 cut(s)	18
BstMWI	GCNNNNNNNGC	2 cut(s)	61, 268
BstNI	CCWGG	2 cut(s)	308, 566
BstNSI	RCATGY	1 cut(s)	181
BstSCI	CCNGG	2 cut(s)	306, 564
BstSFI	CTRYAG	4 cut(s)	117, 391, 543, 699
BstV1I	GCAGC	1 cut(s)	613
BstX2I	RGATCY	1 cut(s)	73
BstYI	RGATCY	1 cut(s)	73
BstZI	CGGCCG	1 cut(s)	15
BsuI	GTATCC	1 cut(s)	532
BsuRI	GGCC	1 cut(s)	17
BtsCI	GGATG	2 cut(s)	329, 760
BtsIMutI	CAGTG	1 cut(s)	677
Cac8I	GCNNGC	1 cut(s)	543
CfoI	GCGC	1 cut(s)	55
Cfr13I	GGNCC	1 cut(s)	124
CsiI	ACCWGGT	1 cut(s)	306
Csp6I	GTAC	3 cut(s)	201, 281, 400
CviAII	CATG	1 cut(s)	178
CviQI	GTAC	3 cut(s)	201, 281, 400
DdeI	CTNAG	2 cut(s)	353, 729
DpnI	GATC	2 cut(s)	75, 317
DpnII	GATC	2 cut(s)	73, 315
EaeI	YGGCCR	1 cut(s)	15
EagI	CGGCCG	1 cut(s)	15
Eam1104I	CTCTTC	3 cut(s)	26, 501, 648
EarI	CTCTTC	3 cut(s)	26, 501, 648
EclXI	CGGCCG	1 cut(s)	15
Eco24I	GRGCYC	2 cut(s)	38, 735
Eco47I	GGWCC	1 cut(s)	124
Eco52I	CGGCCG	1 cut(s)	15
Eco57I	CTGAAG	1 cut(s)	701
EcoRI	GAATTC	1 cut(s)	637
EcoRII	CCWGG	2 cut(s)	306, 564
EcoT38I	GRGCYC	2 cut(s)	38, 735
FaeI	CATG	1 cut(s)	181
FaiI	YATR	4 cut(s)	179, 393, 614, 632
FatI	CATG	1 cut(s)	177
Fnu4HI	GCNGC	1 cut(s)	627
FokI	GGATG	2 cut(s)	316, 767
FriOI	GRGCYC	2 cut(s)	38, 735
Fsp4HI	GCNGC	1 cut(s)	627
FspBI	CTAG	3 cut(s)	299, 513, 663
GlaI	GCGC	1 cut(s)	54
GluI	GCNGC	1 cut(s)	627
HaeIII	GGCC	1 cut(s)	17
HhaI	GCGC	1 cut(s)	55
Hin1II	CATG	1 cut(s)	181
Hin6I	GCGC	1 cut(s)	53
HinP1I	GCGC	1 cut(s)	53
HincII	GTYRAC	1 cut(s)	304
HindII	GTYRAC	1 cut(s)	304
HinfI	GANTC	3 cut(s)	225, 406, 646
HphI	GGTGA	3 cut(s)	16, 220, 460
Hpy166II	GTNNAC	1 cut(s)	304
Hpy188I	TCNGA	2 cut(s)	80, 151
Hpy188III	TCNNGA	5 cut(s)	376, 434, 554, 650, 746
Hpy8I	GTNNAC	1 cut(s)	304
HpyAV	CCTTC	1 cut(s)	439
HpyCH4IV	ACGT	1 cut(s)	275
HpyCH4V	TGCA	5 cut(s)	271, 329, 346, 545, 701
HpyF10VI	GCNNNNNNNGC	2 cut(s)	61, 268
HpyF3I	CTNAG	2 cut(s)	353, 729
HpySE526I	ACGT	1 cut(s)	275
Hsp92II	CATG	1 cut(s)	181
HspAI	GCGC	1 cut(s)	53
Kzo9I	GATC	2 cut(s)	73, 315
LguI	GCTCTTC	1 cut(s)	26
LmnI	GCTCC	4 cut(s)	61, 113, 583, 814
Lsp1109I	GCAGC	1 cut(s)	613
LweI	GCATC	2 cut(s)	338, 715
MabI	ACCWGGT	1 cut(s)	306
MaeI	CTAG	3 cut(s)	299, 513, 663
MaeII	ACGT	1 cut(s)	275
MalI	GATC	2 cut(s)	75, 317
MboI	GATC	2 cut(s)	73, 315
MboII	GAAGA	7 cut(s)	37, 43, 391, 515, 518, 665, 832
MflI	RGATCY	1 cut(s)	73
MhlI	GDGCHC	2 cut(s)	38, 735
MluCI	AATT	5 cut(s)	128, 533, 609, 637, 711
MlyI	GAGTC	1 cut(s)	640
MmeI	TCCRAC	1 cut(s)	51
MnlI	CCTC	9 cut(s)	48, 74, 115, 333, 344, 490, 649, 778, 805
MseI	TTAA	3 cut(s)	189, 416, 441
MspR9I	CCNGG	2 cut(s)	308, 566
MvaI	CCWGG	2 cut(s)	308, 566
MwoI	GCNNNNNNNGC	2 cut(s)	61, 268
NdeII	GATC	2 cut(s)	73, 315
NlaIII	CATG	1 cut(s)	181
NlaIV	GGNNCC	1 cut(s)	579
NspI	RCATGY	1 cut(s)	181
PciSI	GCTCTTC	1 cut(s)	26
PcsI	WCGNNNNNNNCGW	1 cut(s)	168
PfeI	GAWTC	2 cut(s)	225, 406
PkrI	GCNGC	1 cut(s)	628
PleI	GAGTC	1 cut(s)	640
PpsI	GAGTC	1 cut(s)	640
Psp6I	CCWGG	2 cut(s)	306, 564
PspGI	CCWGG	2 cut(s)	306, 564
PspN4I	GGNNCC	1 cut(s)	579
PspPI	GGNCC	1 cut(s)	124
PstI	CTGCAG	2 cut(s)	547, 703
PsuI	RGATCY	1 cut(s)	73
RsaI	GTAC	3 cut(s)	202, 282, 401
RsaNI	GTAC	3 cut(s)	201, 281, 400
SapI	GCTCTTC	1 cut(s)	26
SaqAI	TTAA	3 cut(s)	189, 416, 441
SatI	GCNGC	1 cut(s)	627
Sau3AI	GATC	2 cut(s)	73, 315
Sau96I	GGNCC	1 cut(s)	124
SchI	GAGTC	1 cut(s)	640
ScrFI	CCNGG	2 cut(s)	308, 566
SduI	GDGCHC	2 cut(s)	38, 735
SexAI	ACCWGGT	1 cut(s)	306
SfaNI	GCATC	2 cut(s)	338, 715
SfcI	CTRYAG	4 cut(s)	117, 391, 543, 699
SinI	GGWCC	1 cut(s)	124
SmlI	CTYRAG	1 cut(s)	56
SmoI	CTYRAG	1 cut(s)	56
Sse9I	AATT	5 cut(s)	128, 533, 609, 637, 711
SspMI	CTAG	3 cut(s)	299, 513, 663
StyD4I	CCNGG	2 cut(s)	306, 564
TaiI	ACGT	1 cut(s)	278
TaqI	TCGA	3 cut(s)	102, 171, 318
TasI	AATT	5 cut(s)	128, 533, 609, 637, 711
TatI	WGTACW	1 cut(s)	399
TfiI	GAWTC	2 cut(s)	225, 406
Tru1I	TTAA	3 cut(s)	189, 416, 441
Tru9I	TTAA	3 cut(s)	189, 416, 441
TscAI	CASTG	1 cut(s)	684
TseI	GCWGC	1 cut(s)	626
TspDTI	ATGAA	5 cut(s)	171, 477, 629, 792, 843
TspRI	CASTG	1 cut(s)	684
VpaK11BI	GGWCC	1 cut(s)	124
XapI	RAATTY	3 cut(s)	533, 637, 711
XceI	RCATGY	1 cut(s)	181
XspI	CTAG	3 cut(s)	299, 513, 663

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.