Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000744.1

Orthogroup ID

OG0007366

Physical Location & Seq

Genomic Coordinates Reverse (-)

303260 .. 308004

Gene Structure 4745 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000744.1_g000083.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

atggcagacctaggcgttgaggcagtcggtgatggagaggtcgaagcgggactcgaaccatgtgcccctgacgaagatgggtttgtgtggttgattgagatctccccgatcgccatcaggaagcctattgatcacccatgcaatctagttttccagttttcccctaaaccccagccgagcaatcagacccatttcttctgtcctttaggatgtgaaccaaatgagaatattcctctatcgttaaatccgattgaactcaaatgcttccaatttaatggcgggggagtgccagtttcgttctgtccgagcggaattcgtgaggaatttcaattcaactcggatgcttctcggaaagttcgcgtcttggataataagatacctatactcgaaaacttgggagctacagaggaccaatttgacaccattgatttgtctgacaatgaaattgttaagctggaaaacttgccctatctttatcgtttgggtactttgattattaataacaatagaattacccatatcaatcccaacattggagagttcttgctgaagttacatactttagtacttaccaacaacatgctagtcaacttggtagagattgatcctcttgcatccctttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008380 GO:0009266 GO:0009409 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0010467 GO:0015030 GO:0016070 GO:0016071 GO:0016604 GO:0031974 GO:0031981 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050896 GO:0070013 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

LRR_9

Protein Analysis

207

Amino Acids

22.98

Weight (kDa)

4.44

Isoelectric Point (pI)

35.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007366)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09760
fragaria_vesca	FvH4_4g21991
malus_domestica	MD13G1135200.v1.1 MD16G1130900.v1.1
prunus_persica	Prupe.1G210100_v2.0.a1
pyrus_communis	pycom13g11800 pycom16g11540
rosa_chinensis	RchiOBHm_Chr4g0428191
rosa_laevigata	RLG00000007171
rosa_multiflora	Rmu_sc0000744.1_g000083 Rmu_sc0004940.1_g000005 Rmu_sc0005142.1_g000001 Rmu_sc0009599.1_g000004
rosa_roxburghii	Rroxscaffold_5G00369920
rosa_rugosa	Rorug04G0182200 Rorug04G0182300 Rorug04G0182400 Rorug04G0182500 Rorug04G0223400 Rorug04G0223500
rosa_samantha	Rh4AG280700 Rh4BG286200 Rh4CG301900
rosa_wichuraiana	Rw4G020900 Rw4G024380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	309
AccII	CGCG	1 cut(s)	360
AciI	CCGC	3 cut(s)	47, 279, 309
AclWI	GGATC	1 cut(s)	599
AcsI	RAATTY	2 cut(s)	312, 323
AcuI	CTGAAG	1 cut(s)	569
AfaI	GTAC	2 cut(s)	487, 567
AfiI	CCNNNNNNNGG	1 cut(s)	533
AgsI	TTSAA	3 cut(s)	254, 329, 334
AluBI	AGCT	2 cut(s)	401, 454
AluI	AGCT	2 cut(s)	401, 454
AlwI	GGATC	1 cut(s)	599
ApoI	RAATTY	2 cut(s)	312, 323
AseI	ATTAAT	1 cut(s)	498
AspA2I	CCTAGG	1 cut(s)	10
AspS9I	GGNCC	1 cut(s)	409
AsuHPI	GGTGA	2 cut(s)	41, 125
AvaII	GGWCC	1 cut(s)	409
AvrII	CCTAGG	1 cut(s)	10
BaeGI	GKGCMC	1 cut(s)	67
BccI	CCATC	3 cut(s)	26, 71, 122
BcgI	CGANNNNNNTGC	2 cut(s)	44, 78
BclI	TGATCA	1 cut(s)	130
BfaI	CTAG	3 cut(s)	11, 146, 584
BfmI	CTRYAG	1 cut(s)	402
BglII	AGATCT	1 cut(s)	99
BlnI	CCTAGG	1 cut(s)	10
BmcAI	AGTACT	1 cut(s)	567
Bme18I	GGWCC	1 cut(s)	409
BmgT120I	GGNCC	1 cut(s)	409
BmsI	GCATC	1 cut(s)	331
BsaBI	GATNNNNATC	2 cut(s)	98, 113
BsaJI	CCNNGG	1 cut(s)	10
BsaXI	ACNNNNNCTCC	2 cut(s)	276, 306
Bsc4I	CCNNNNNNNGG	1 cut(s)	533
Bse1I	ACTGG	2 cut(s)	154, 290
Bse8I	GATNNNNATC	2 cut(s)	98, 113
BseDI	CCNNGG	1 cut(s)	10
BseGI	GGATG	3 cut(s)	215, 346, 614
BseJI	GATNNNNATC	2 cut(s)	98, 113
BseLI	CCNNNNNNNGG	1 cut(s)	533
BseNI	ACTGG	2 cut(s)	154, 290
BseSI	GKGCMC	1 cut(s)	67
BseYI	CCCAGC	1 cut(s)	171
Bsh1236I	CGCG	1 cut(s)	360
Bsh1285I	CGRYCG	1 cut(s)	111
BsiEI	CGRYCG	1 cut(s)	111
BslFI	GGGAC	1 cut(s)	63
BslI	CCNNNNNNNGG	1 cut(s)	533
BsmFI	GGGAC	1 cut(s)	63
Bsp1286I	GDGCHC	1 cut(s)	67
Bsp143I	GATC	4 cut(s)	99, 108, 130, 604
BspACI	CCGC	3 cut(s)	47, 279, 309
BspFNI	CGCG	1 cut(s)	360
BspPI	GGATC	1 cut(s)	599
BsrBI	CCGCTC	1 cut(s)	309
BsrI	ACTGG	2 cut(s)	154, 290
BssECI	CCNNGG	1 cut(s)	10
BssMI	GATC	4 cut(s)	99, 108, 130, 604
BssT1I	CCWWGG	1 cut(s)	10
BstF5I	GGATG	3 cut(s)	215, 346, 614
BstFNI	CGCG	1 cut(s)	360
BstKTI	GATC	4 cut(s)	102, 111, 133, 607
BstMBI	GATC	4 cut(s)	99, 108, 130, 604
BstMCI	CGRYCG	1 cut(s)	111
BstNSI	RCATGY	1 cut(s)	583
BstSFI	CTRYAG	1 cut(s)	402
BstSLI	GKGCMC	1 cut(s)	67
BstUI	CGCG	1 cut(s)	360
BstX2I	RGATCY	1 cut(s)	99
BstXI	CCANNNNNNTGG	1 cut(s)	275
BstYI	RGATCY	1 cut(s)	99
BtsCI	GGATG	3 cut(s)	215, 346, 614
Cfr13I	GGNCC	1 cut(s)	409
CseI	GACGC	1 cut(s)	349
Csp6I	GTAC	2 cut(s)	486, 566
CviAII	CATG	3 cut(s)	60, 138, 580
CviJI	RGCY	4 cut(s)	124, 175, 401, 454
CviKI_1	RGCY	4 cut(s)	124, 175, 401, 454
CviQI	GTAC	2 cut(s)	486, 566
DpnI	GATC	4 cut(s)	101, 110, 132, 606
DpnII	GATC	4 cut(s)	99, 108, 130, 604
Eco130I	CCWWGG	1 cut(s)	10
Eco47I	GGWCC	1 cut(s)	409
Eco57I	CTGAAG	1 cut(s)	569
EcoRI	GAATTC	1 cut(s)	312
EcoT14I	CCWWGG	1 cut(s)	10
ErhI	CCWWGG	1 cut(s)	10
FaeI	CATG	3 cut(s)	63, 141, 583
FaiI	YATR	6 cut(s)	61, 139, 383, 519, 558, 581
FaqI	GGGAC	1 cut(s)	63
FatI	CATG	3 cut(s)	59, 137, 579
FauI	CCCGC	2 cut(s)	40, 272
FbaI	TGATCA	1 cut(s)	130
FokI	GGATG	3 cut(s)	222, 353, 601
FspBI	CTAG	3 cut(s)	11, 146, 584
GsaI	CCCAGC	1 cut(s)	175
HgaI	GACGC	1 cut(s)	349
Hin1II	CATG	3 cut(s)	63, 141, 583
HincII	GTYRAC	1 cut(s)	589
HindII	GTYRAC	1 cut(s)	589
HinfI	GANTC	1 cut(s)	51
HphI	GGTGA	2 cut(s)	41, 125
Hpy166II	GTNNAC	2 cut(s)	215, 589
Hpy188I	TCNGA	6 cut(s)	186, 249, 306, 340, 351, 436
Hpy188III	TCNNGA	2 cut(s)	118, 317
Hpy8I	GTNNAC	2 cut(s)	215, 589
HpyCH4V	TGCA	2 cut(s)	141, 614
Hsp92II	CATG	3 cut(s)	63, 141, 583
Ksp22I	TGATCA	1 cut(s)	130
Kzo9I	GATC	4 cut(s)	99, 108, 130, 604
LmnI	GCTCC	1 cut(s)	398
LpnPI	CCDG	6 cut(s)	81, 103, 167, 185, 303, 440
LweI	GCATC	1 cut(s)	331
MaeI	CTAG	3 cut(s)	11, 146, 584
MaeIII	GTNAC	1 cut(s)	552
MalI	GATC	4 cut(s)	101, 110, 132, 606
MbiI	CCGCTC	1 cut(s)	309
MboI	GATC	4 cut(s)	99, 108, 130, 604
MboII	GAAGA	2 cut(s)	86, 187
MflI	RGATCY	1 cut(s)	99
MhlI	GDGCHC	1 cut(s)	67
MluCI	AATT	7 cut(s)	269, 312, 323, 329, 413, 444, 510
MlyI	GAGTC	1 cut(s)	45
MnlI	CCTC	6 cut(s)	13, 31, 243, 313, 400, 618
MseI	TTAA	4 cut(s)	242, 273, 450, 498
MvnI	CGCG	1 cut(s)	360
NdeII	GATC	4 cut(s)	99, 108, 130, 604
NlaIII	CATG	3 cut(s)	63, 141, 583
NmeAIII	GCCGAG	1 cut(s)	201
NspI	RCATGY	1 cut(s)	583
PcsI	WCGNNNNNNNCGW	2 cut(s)	245, 302
Ple19I	CGATCG	1 cut(s)	111
PleI	GAGTC	1 cut(s)	45
PpsI	GAGTC	1 cut(s)	45
PshBI	ATTAAT	1 cut(s)	498
PspFI	CCCAGC	1 cut(s)	171
PspPI	GGNCC	1 cut(s)	409
PsuI	RGATCY	1 cut(s)	99
PvuI	CGATCG	1 cut(s)	111
RsaI	GTAC	2 cut(s)	487, 567
RsaNI	GTAC	2 cut(s)	486, 566
SaqAI	TTAA	4 cut(s)	242, 273, 450, 498
Sau3AI	GATC	4 cut(s)	99, 108, 130, 604
Sau96I	GGNCC	1 cut(s)	409
ScaI	AGTACT	1 cut(s)	567
SchI	GAGTC	1 cut(s)	45
SduI	GDGCHC	1 cut(s)	67
SetI	ASST	5 cut(s)	12, 42, 382, 403, 456
SfaNI	GCATC	1 cut(s)	331
SfcI	CTRYAG	1 cut(s)	402
SinI	GGWCC	1 cut(s)	409
Sse9I	AATT	7 cut(s)	269, 312, 323, 329, 413, 444, 510
SsiI	CCGC	3 cut(s)	47, 279, 309
SspI	AATATT	1 cut(s)	229
SspMI	CTAG	3 cut(s)	11, 146, 584
StyI	CCWWGG	1 cut(s)	10
TaqI	TCGA	3 cut(s)	42, 54, 387
TasI	AATT	7 cut(s)	269, 312, 323, 329, 413, 444, 510
TatI	WGTACW	1 cut(s)	565
Tru1I	TTAA	4 cut(s)	242, 273, 450, 498
Tru9I	TTAA	4 cut(s)	242, 273, 450, 498
TspDTI	ATGAA	1 cut(s)	456
VpaK11BI	GGWCC	1 cut(s)	409
VspI	ATTAAT	1 cut(s)	498
XapI	RAATTY	2 cut(s)	312, 323
XceI	RCATGY	1 cut(s)	583
XmaJI	CCTAGG	1 cut(s)	10
XspI	CTAG	3 cut(s)	11, 146, 584
ZrmI	AGTACT	1 cut(s)	567

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.