Rw4G020900

Cgr1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0007366
Physical Location & Seq
Reverse (-)
45013521 .. 45018197
4677 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G020900.1

Sequence Viewer

Length: 609 bp
ATGGCCTGCACAATTGACTTCCGCTGCCTAGACGAAGGCTTCGGTGGCAAAACCTACAAGCGCAACTGGAACCCCGAAGCCACCGTCGACGACGAAGACGCTGCCATGGAAATCGACGCAGCCTACCCACGTCCGGCGAAGCGATCCGCGGTGTCCTCCACGGACAATCCGGACAAACAAGTCTTTGGTCGGCCGAGCTACGACGTCGTGATGGCCGGGAAGGTCTCCAGGCGGAAGTGGAAACAGCCGCGGAAGCAGAGGTCATTGGCCGTTCAGGTGAGCCGGAAGGGGACGACGTTTGAGGAGAGGGAGAAGAACAAGTCGGATGCTTCAAGTGATATAAATTGGGTTAGTAATAAGATACCTGTAATCGAAAACTTAGGAGCTATAGAGGACCAATTTGACACCATTCATTTGTCTGACAATGAAATTGTTAAGCTGGAAAACTTGCCCTATCTTAATCGTTTGGGTACTTTGATTATTAATAACAATAGAATTACCCGTATCAATCTCAACATTGGAGAGTTCTTGCCGAAGTTACATACTTCAGTACTTACCAACAACAGGCTAGTCAACTTGGTAGAGATTGATCGTCTTGCATCCCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cgr1

Protein Analysis

202

Amino Acids

22.92

Weight (kDa)

8.5

Isoelectric Point (pI)

49.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_9 PF14580 114 - 202 1.8e-34 Leucine-rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 179
AatII GACGTC 1 cut(s) 207
AccI GTMKAC 1 cut(s) 87
AccII CGCG 2 cut(s) 149, 250
AccIII TCCGGA 1 cut(s) 169
AciI CCGC 6 cut(s) 22, 147, 149, 232, 248, 250
AclWI GGATC 1 cut(s) 138
AcoI YGGCCR 3 cut(s) 191, 213, 267
AcuI CTGAAG 1 cut(s) 531
AcyI GRCGYC 1 cut(s) 204
AfaI GTAC 2 cut(s) 472, 552
AfiI CCNNNNNNNGG 2 cut(s) 133, 564
AgsI TTSAA 1 cut(s) 333
AjiI CACGTC 1 cut(s) 131
AjnI CCWGG 1 cut(s) 227
AluBI AGCT 3 cut(s) 198, 386, 439
AluI AGCT 3 cut(s) 198, 386, 439
Alw26I GTCTC 1 cut(s) 229
AlwI GGATC 1 cut(s) 138
Aor13HI TCCGGA 1 cut(s) 169
AoxI GGCC 4 cut(s) 3, 191, 213, 267
ApeKI GCWGC 3 cut(s) 24, 101, 119
ArsI GACNNNNNNTTYG 4 cut(s) 23, 55, 69, 101
AseI ATTAAT 1 cut(s) 483
AspLEI GCGC 1 cut(s) 63
AspS9I GGNCC 1 cut(s) 394
AsuC2I CCSGG 1 cut(s) 217
AsuHPI GGTGA 1 cut(s) 289
AvaII GGWCC 1 cut(s) 394
BbsI GAAGAC 1 cut(s) 102
BbvI GCAGC 3 cut(s) 11, 88, 131
BccI CCATC 1 cut(s) 205
BceAI ACGGC 1 cut(s) 254
BcgI CGANNNNNNTGC 2 cut(s) 83, 117
BciT130I CCWGG 1 cut(s) 229
BcnI CCSGG 1 cut(s) 217
BcoDI GTCTC 1 cut(s) 229
BfaI CTAG 2 cut(s) 29, 569
BfmI CTRYAG 1 cut(s) 387
BisI GCNGC 4 cut(s) 25, 102, 120, 248
BlsI GCNGC 4 cut(s) 26, 103, 121, 249
BmcAI AGTACT 1 cut(s) 552
Bme1390I CCNGG 2 cut(s) 217, 229
Bme18I GGWCC 1 cut(s) 394
BmgBI CACGTC 1 cut(s) 131
BmgT120I GGNCC 1 cut(s) 394
BmiI GGNNCC 1 cut(s) 71
BmrFI CCNGG 2 cut(s) 217, 229
BmsI GCATC 1 cut(s) 316
BpiI GAAGAC 1 cut(s) 102
BpmI CTGGAG 1 cut(s) 211
BpuMI CCSGG 1 cut(s) 217
BsaHI GRCGYC 1 cut(s) 204
BsaI GGTCTC 1 cut(s) 229
BsaJI CCNNGG 4 cut(s) 105, 147, 159, 248
BsaWI WCCGGW 1 cut(s) 169
Bsc4I CCNNNNNNNGG 2 cut(s) 133, 564
Bse1I ACTGG 1 cut(s) 71
BseAI TCCGGA 1 cut(s) 169
BseBI CCWGG 1 cut(s) 229
BseDI CCNNGG 4 cut(s) 105, 147, 159, 248
BseGI GGATG 2 cut(s) 331, 599
BseLI CCNNNNNNNGG 2 cut(s) 133, 564
BseNI ACTGG 1 cut(s) 71
BseRI GAGGAG 1 cut(s) 317
BseX3I CGGCCG 1 cut(s) 191
BseXI GCAGC 3 cut(s) 11, 88, 131
Bsh1236I CGCG 2 cut(s) 149, 250
Bsh1285I CGRYCG 1 cut(s) 194
BshFI GGCC 4 cut(s) 5, 193, 215, 269
BsiEI CGRYCG 1 cut(s) 194
BsiSI CCGG 4 cut(s) 134, 170, 216, 283
BslFI GGGAC 1 cut(s) 304
BslI CCNNNNNNNGG 2 cut(s) 133, 564
BsmAI GTCTC 1 cut(s) 229
BsmFI GGGAC 1 cut(s) 304
BsnI GGCC 4 cut(s) 5, 193, 215, 269
Bso31I GGTCTC 1 cut(s) 229
Bsp13I TCCGGA 1 cut(s) 169
Bsp143I GATC 2 cut(s) 143, 589
Bsp19I CCATGG 1 cut(s) 105
BspACI CCGC 6 cut(s) 22, 147, 149, 232, 248, 250
BspANI GGCC 4 cut(s) 5, 193, 215, 269
BspEI TCCGGA 1 cut(s) 169
BspFNI CGCG 2 cut(s) 149, 250
BspLI GGNNCC 1 cut(s) 71
BspPI GGATC 1 cut(s) 138
BspTNI GGTCTC 1 cut(s) 229
BsrI ACTGG 1 cut(s) 71
BssECI CCNNGG 4 cut(s) 105, 147, 159, 248
BssMI GATC 2 cut(s) 143, 589
BssNI GRCGYC 1 cut(s) 204
BssT1I CCWWGG 1 cut(s) 105
Bst2UI CCWGG 1 cut(s) 229
Bst4CI ACNGT 1 cut(s) 85
BstACI GRCGYC 1 cut(s) 204
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 1 cut(s) 379
BstDSI CCRYGG 4 cut(s) 105, 147, 159, 248
BstF5I GGATG 2 cut(s) 331, 599
BstFNI CGCG 2 cut(s) 149, 250
BstHHI GCGC 1 cut(s) 63
BstKTI GATC 2 cut(s) 146, 592
BstMAI GTCTC 1 cut(s) 229
BstMBI GATC 2 cut(s) 143, 589
BstMCI CGRYCG 1 cut(s) 194
BstMWI GCNNNNNNNGC 2 cut(s) 45, 253
BstNI CCWGG 1 cut(s) 229
BstSCI CCNGG 2 cut(s) 215, 227
BstSFI CTRYAG 1 cut(s) 387
BstUI CGCG 2 cut(s) 149, 250
BstV1I GCAGC 3 cut(s) 11, 88, 131
BstV2I GAAGAC 1 cut(s) 102
BstZI CGGCCG 1 cut(s) 191
BsuRI GGCC 4 cut(s) 5, 193, 215, 269
BtgI CCRYGG 4 cut(s) 105, 147, 159, 248
BtrI CACGTC 1 cut(s) 131
BtsCI GGATG 2 cut(s) 331, 599
Cac8I GCNNGC 1 cut(s) 7
CfoI GCGC 1 cut(s) 63
Cfr13I GGNCC 1 cut(s) 394
Cfr42I CCGCGG 2 cut(s) 150, 251
CseI GACGC 2 cut(s) 107, 125
Csp6I GTAC 2 cut(s) 471, 551
CviAII CATG 1 cut(s) 106
CviQI GTAC 2 cut(s) 471, 551
DdeI CTNAG 1 cut(s) 379
DpnI GATC 2 cut(s) 145, 591
DpnII GATC 2 cut(s) 143, 589
DrdI GACNNNNNNGTC 1 cut(s) 179
DseDI GACNNNNNNGTC 1 cut(s) 179
EaeI YGGCCR 3 cut(s) 191, 213, 267
EagI CGGCCG 1 cut(s) 191
EciI GGCGGA 1 cut(s) 247
EclXI CGGCCG 1 cut(s) 191
Eco130I CCWWGG 1 cut(s) 105
Eco31I GGTCTC 1 cut(s) 229
Eco47I GGWCC 1 cut(s) 394
Eco52I CGGCCG 1 cut(s) 191
Eco57I CTGAAG 1 cut(s) 531
EcoRII CCWGG 1 cut(s) 227
EcoT14I CCWWGG 1 cut(s) 105
ErhI CCWWGG 1 cut(s) 105
FaeI CATG 1 cut(s) 109
FaiI YATR 4 cut(s) 107, 341, 389, 543
FaqI GGGAC 1 cut(s) 304
FatI CATG 1 cut(s) 105
FblI GTMKAC 1 cut(s) 87
Fnu4HI GCNGC 4 cut(s) 25, 102, 120, 248
FokI GGATG 2 cut(s) 338, 586
Fsp4HI GCNGC 4 cut(s) 25, 102, 120, 248
FspBI CTAG 2 cut(s) 29, 569
GlaI GCGC 1 cut(s) 62
GluI GCNGC 4 cut(s) 25, 102, 120, 248
GsuI CTGGAG 1 cut(s) 211
HaeIII GGCC 4 cut(s) 5, 193, 215, 269
HapII CCGG 4 cut(s) 134, 170, 216, 283
HgaI GACGC 2 cut(s) 107, 125
HhaI GCGC 1 cut(s) 63
Hin1I GRCGYC 1 cut(s) 204
Hin1II CATG 1 cut(s) 109
Hin6I GCGC 1 cut(s) 61
HinP1I GCGC 1 cut(s) 61
HincII GTYRAC 2 cut(s) 88, 574
HindII GTYRAC 2 cut(s) 88, 574
HpaII CCGG 4 cut(s) 134, 170, 216, 283
HphI GGTGA 1 cut(s) 289
Hpy166II GTNNAC 2 cut(s) 88, 574
Hpy188I TCNGA 2 cut(s) 325, 421
Hpy188III TCNNGA 2 cut(s) 170, 208
Hpy8I GTNNAC 2 cut(s) 88, 574
Hpy99I CGWCG 7 cut(s) 89, 92, 95, 119, 206, 209, 298
HpyAV CCTTC 3 cut(s) 29, 214, 280
HpyCH4III ACNGT 1 cut(s) 85
HpyCH4IV ACGT 3 cut(s) 130, 204, 296
HpyCH4V TGCA 2 cut(s) 9, 599
HpyF10VI GCNNNNNNNGC 2 cut(s) 45, 253
HpyF3I CTNAG 1 cut(s) 379
HpySE526I ACGT 3 cut(s) 130, 204, 296
Hsp92I GRCGYC 1 cut(s) 204
Hsp92II CATG 1 cut(s) 109
HspAI GCGC 1 cut(s) 61
Kpn2I TCCGGA 1 cut(s) 169
KspI CCGCGG 2 cut(s) 150, 251
Kzo9I GATC 2 cut(s) 143, 589
LmnI GCTCC 1 cut(s) 383
Lsp1109I GCAGC 3 cut(s) 11, 88, 131
LweI GCATC 1 cut(s) 316
MaeI CTAG 2 cut(s) 29, 569
MaeII ACGT 3 cut(s) 130, 204, 296
MaeIII GTNAC 1 cut(s) 537
MalI GATC 2 cut(s) 145, 591
MboI GATC 2 cut(s) 143, 589
MboII GAAGA 2 cut(s) 107, 325
MfeI CAATTG 1 cut(s) 12
MluCI AATT 5 cut(s) 12, 343, 398, 429, 495
MmeI TCCRAC 1 cut(s) 303
MnlI CCTC 5 cut(s) 166, 252, 295, 300, 385
MroI TCCGGA 1 cut(s) 169
MseI TTAA 3 cut(s) 435, 459, 483
MspA1I CMGCKG 3 cut(s) 24, 149, 250
MspI CCGG 4 cut(s) 134, 170, 216, 283
MspR9I CCNGG 2 cut(s) 217, 229
MunI CAATTG 1 cut(s) 12
MvaI CCWGG 1 cut(s) 229
MvnI CGCG 2 cut(s) 149, 250
MwoI GCNNNNNNNGC 2 cut(s) 45, 253
NciI CCSGG 1 cut(s) 217
NcoI CCATGG 1 cut(s) 105
NdeII GATC 2 cut(s) 143, 589
NlaIII CATG 1 cut(s) 109
NlaIV GGNNCC 1 cut(s) 71
NmeAIII GCCGAG 1 cut(s) 219
PkrI GCNGC 4 cut(s) 26, 103, 121, 249
PshBI ATTAAT 1 cut(s) 483
Psp6I CCWGG 1 cut(s) 227
PspGI CCWGG 1 cut(s) 227
PspN4I GGNNCC 1 cut(s) 71
PspPI GGNCC 1 cut(s) 394
RsaI GTAC 2 cut(s) 472, 552
RsaNI GTAC 2 cut(s) 471, 551
SacII CCGCGG 2 cut(s) 150, 251
SalI GTCGAC 1 cut(s) 86
SaqAI TTAA 3 cut(s) 435, 459, 483
SatI GCNGC 4 cut(s) 25, 102, 120, 248
Sau3AI GATC 2 cut(s) 143, 589
Sau96I GGNCC 1 cut(s) 394
ScaI AGTACT 1 cut(s) 552
ScrFI CCNGG 2 cut(s) 217, 229
SfaNI GCATC 1 cut(s) 316
SfcI CTRYAG 1 cut(s) 387
Sfr303I CCGCGG 2 cut(s) 150, 251
SgrBI CCGCGG 2 cut(s) 150, 251
SgrDI CGTCGACG 1 cut(s) 86
SinI GGWCC 1 cut(s) 394
Sse9I AATT 5 cut(s) 12, 343, 398, 429, 495
SsiI CCGC 6 cut(s) 22, 147, 149, 232, 248, 250
SspMI CTAG 2 cut(s) 29, 569
StyD4I CCNGG 2 cut(s) 215, 227
StyI CCWWGG 1 cut(s) 105
TaaI ACNGT 1 cut(s) 85
TaiI ACGT 3 cut(s) 133, 207, 299
TaqI TCGA 3 cut(s) 87, 114, 372
TasI AATT 5 cut(s) 12, 343, 398, 429, 495
TatI WGTACW 1 cut(s) 550
TauI GCSGC 1 cut(s) 250
Tru1I TTAA 3 cut(s) 435, 459, 483
Tru9I TTAA 3 cut(s) 435, 459, 483
TseI GCWGC 3 cut(s) 24, 101, 119
TspDTI ATGAA 2 cut(s) 401, 441
TspGWI ACGGA 1 cut(s) 176
VpaK11BI GGWCC 1 cut(s) 394
VspI ATTAAT 1 cut(s) 483
XmiI GTMKAC 1 cut(s) 87
XspI CTAG 2 cut(s) 29, 569
ZraI GACGTC 1 cut(s) 205
ZrmI AGTACT 1 cut(s) 552
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.