Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0007366

Physical Location & Seq

Genomic Coordinates Reverse (-)

38370392 .. 38370952

Gene Structure 561 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0223500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGATCTGGAAAGAGAGTAATAGGAGAGTGTGGAATGGAAAGGCTATGGGGATGCAACAAGTTGCATTCCAGGCGTCCCATAATTATCAATTATTCCAACAAGCTGGTAGCTCGGTCTCATCATCTTCGAGGGCGGGGAGAGTTCCGGTTCCGTGGAAGCCACCATCAGTTGGTTGGTTGAAAGCAAACTTTGATGGTGCTTTCAATGGTCTCTCGAGAACAGGTGGTATCAGTGTGGTGGTGAGAGACTATATTGGTGACATCATTGGAGGGGTTTGTATGCATGTTGCTTATGTTTCTTCACCGGTTGAAATTGAAGCCTTGGCTGCTAGAGCAGCTTGTGCTTTGGCCGTGCAATTTCAGCTTGCTCCTATCAGTTTTGAAGGGGATTGTCTGCAGGTCAACCAAGCTATAATGGCTAGAGAGGAGGACACATCTATTTGGGGTCGGATAATTGATGACTCTGTGTTCTATTTAAACCAGCTACCTGGCTCTTCATTCTCCCATGTTTATAGGGAGTCCAATTCTGCAGCAGATAAGGCGATAAGCTTGCTAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008380 GO:0009266 GO:0009409 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0010467 GO:0015030 GO:0016070 GO:0016071 GO:0016604 GO:0031974 GO:0031981 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050896 GO:0070013 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

LRR_9

Protein Analysis

186

Amino Acids

20.22

Weight (kDa)

6.28

Isoelectric Point (pI)

49.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	63 - 181	3.1e-20	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0007366)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09760
fragaria_vesca	FvH4_4g21991
malus_domestica	MD13G1135200.v1.1 MD16G1130900.v1.1
prunus_persica	Prupe.1G210100_v2.0.a1
pyrus_communis	pycom13g11800 pycom16g11540
rosa_chinensis	RchiOBHm_Chr4g0428191
rosa_laevigata	RLG00000007171
rosa_multiflora	Rmu_sc0000744.1_g000083 Rmu_sc0004940.1_g000005 Rmu_sc0005142.1_g000001 Rmu_sc0009599.1_g000004
rosa_roxburghii	Rroxscaffold_5G00369920
rosa_rugosa	Rorug04G0182200 Rorug04G0182300 Rorug04G0182400 Rorug04G0182500 Rorug04G0223400 Rorug04G0223500
rosa_samantha	Rh4AG280700 Rh4BG286200 Rh4CG301900
rosa_wichuraiana	Rw4G020900 Rw4G024380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	388
AccB7I	CCANNNNNTGG	1 cut(s)	170
AciI	CCGC	1 cut(s)	134
AcoI	YGGCCR	1 cut(s)	348
AcyI	GRCGYC	1 cut(s)	74
AfiI	CCNNNNNNNGG	1 cut(s)	170
AgeI	ACCGGT	1 cut(s)	304
AgsI	TTSAA	5 cut(s)	181, 205, 311, 317, 383
AjnI	CCWGG	2 cut(s)	69, 487
AluBI	AGCT	7 cut(s)	104, 111, 338, 364, 410, 484, 549
AluI	AGCT	7 cut(s)	104, 111, 338, 364, 410, 484, 549
Alw26I	GTCTC	3 cut(s)	121, 215, 240
Ama87I	CYCGRG	1 cut(s)	214
AoxI	GGCC	1 cut(s)	348
ApeKI	GCWGC	3 cut(s)	326, 335, 530
AsiGI	ACCGGT	1 cut(s)	304
AsuHPI	GGTGA	3 cut(s)	253, 269, 294
AvaI	CYCGRG	1 cut(s)	214
BbvI	GCAGC	3 cut(s)	313, 347, 542
BccI	CCATC	2 cut(s)	172, 188
BceAI	ACGGC	1 cut(s)	335
BcgI	CGANNNNNNTGC	1 cut(s)	532
BciT130I	CCWGG	2 cut(s)	71, 489
BcoDI	GTCTC	3 cut(s)	121, 215, 240
BfaI	CTAG	4 cut(s)	330, 420, 554, 559
BfmI	CTRYAG	2 cut(s)	395, 528
BfuAI	ACCTGC	1 cut(s)	388
BisI	GCNGC	3 cut(s)	327, 336, 531
BlsI	GCNGC	3 cut(s)	328, 337, 532
Bme1390I	CCNGG	2 cut(s)	71, 489
BmeT110I	CYCGRG	1 cut(s)	214
BmiI	GGNNCC	1 cut(s)	150
BmrFI	CCNGG	2 cut(s)	71, 489
BmsI	GCATC	1 cut(s)	42
BsaHI	GRCGYC	1 cut(s)	74
BsaI	GGTCTC	2 cut(s)	121, 215
BsaJI	CCNNGG	2 cut(s)	152, 321
BsaWI	WCCGGW	2 cut(s)	145, 304
Bsc4I	CCNNNNNNNGG	1 cut(s)	170
Bse118I	RCCGGY	1 cut(s)	304
BseBI	CCWGG	2 cut(s)	71, 489
BseDI	CCNNGG	2 cut(s)	152, 321
BseGI	GGATG	1 cut(s)	57
BseLI	CCNNNNNNNGG	1 cut(s)	170
BseRI	GAGGAG	1 cut(s)	440
BseXI	GCAGC	3 cut(s)	313, 347, 542
BshFI	GGCC	1 cut(s)	350
BshTI	ACCGGT	1 cut(s)	304
BsiHKCI	CYCGRG	1 cut(s)	214
BsiSI	CCGG	2 cut(s)	146, 305
BslFI	GGGAC	1 cut(s)	61
BslI	CCNNNNNNNGG	1 cut(s)	170
BsmAI	GTCTC	3 cut(s)	121, 215, 240
BsmFI	GGGAC	1 cut(s)	61
BsmI	GAATGC	1 cut(s)	65
BsnI	GGCC	1 cut(s)	350
Bso31I	GGTCTC	2 cut(s)	121, 215
BsoBI	CYCGRG	1 cut(s)	214
Bsp143I	GATC	1 cut(s)	3
BspACI	CCGC	1 cut(s)	134
BspANI	GGCC	1 cut(s)	350
BspLI	GGNNCC	1 cut(s)	150
BspMAI	CTGCAG	2 cut(s)	399, 532
BspMI	ACCTGC	1 cut(s)	388
BspQI	GCTCTTC	1 cut(s)	499
BspTNI	GGTCTC	2 cut(s)	121, 215
BsrFI	RCCGGY	1 cut(s)	304
BssAI	RCCGGY	1 cut(s)	304
BssECI	CCNNGG	2 cut(s)	152, 321
BssMI	GATC	1 cut(s)	3
BssNI	GRCGYC	1 cut(s)	74
BssT1I	CCWWGG	1 cut(s)	321
Bst2UI	CCWGG	2 cut(s)	71, 489
Bst6I	CTCTTC	1 cut(s)	499
BstACI	GRCGYC	1 cut(s)	74
BstAPI	GCANNNNNTGC	1 cut(s)	341
BstC8I	GCNNGC	2 cut(s)	366, 551
BstDSI	CCRYGG	1 cut(s)	152
BstF5I	GGATG	1 cut(s)	57
BstKTI	GATC	1 cut(s)	6
BstMAI	GTCTC	3 cut(s)	121, 215, 240
BstMBI	GATC	1 cut(s)	3
BstMWI	GCNNNNNNNGC	8 cut(s)	71, 326, 332, 335, 341, 361, 416, 539
BstNI	CCWGG	2 cut(s)	71, 489
BstNSI	RCATGY	1 cut(s)	287
BstSCI	CCNGG	2 cut(s)	69, 487
BstSFI	CTRYAG	2 cut(s)	395, 528
BstV1I	GCAGC	3 cut(s)	313, 347, 542
BstXI	CCANNNNNNTGG	2 cut(s)	104, 488
BsuRI	GGCC	1 cut(s)	350
BtgI	CCRYGG	1 cut(s)	152
BtsCI	GGATG	1 cut(s)	57
BtsIMutI	CAGTG	1 cut(s)	238
BveI	ACCTGC	1 cut(s)	388
Cac8I	GCNNGC	2 cut(s)	366, 551
Cfr10I	RCCGGY	1 cut(s)	304
CseI	GACGC	1 cut(s)	63
CspAI	ACCGGT	1 cut(s)	304
CviAII	CATG	2 cut(s)	284, 506
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
DraI	TTTAAA	1 cut(s)	477
EaeI	YGGCCR	1 cut(s)	348
Eam1104I	CTCTTC	1 cut(s)	499
EarI	CTCTTC	1 cut(s)	499
Eco130I	CCWWGG	1 cut(s)	321
Eco31I	GGTCTC	2 cut(s)	121, 215
Eco88I	CYCGRG	1 cut(s)	214
EcoRII	CCWGG	2 cut(s)	69, 487
EcoT14I	CCWWGG	1 cut(s)	321
EcoT22I	ATGCAT	1 cut(s)	285
ErhI	CCWWGG	1 cut(s)	321
FaeI	CATG	2 cut(s)	287, 509
FaiI	YATR	9 cut(s)	47, 81, 252, 281, 285, 294, 413, 507, 513
FaqI	GGGAC	1 cut(s)	61
FatI	CATG	2 cut(s)	283, 505
FauI	CCCGC	1 cut(s)	127
Fnu4HI	GCNGC	3 cut(s)	327, 336, 531
FokI	GGATG	1 cut(s)	64
Fsp4HI	GCNGC	3 cut(s)	327, 336, 531
FspBI	CTAG	4 cut(s)	330, 420, 554, 559
GluI	GCNGC	3 cut(s)	327, 336, 531
HaeIII	GGCC	1 cut(s)	350
HapII	CCGG	2 cut(s)	146, 305
HgaI	GACGC	1 cut(s)	63
Hin1I	GRCGYC	1 cut(s)	74
Hin1II	CATG	2 cut(s)	287, 509
HincII	GTYRAC	1 cut(s)	403
HindII	GTYRAC	1 cut(s)	403
HindIII	AAGCTT	1 cut(s)	547
HinfI	GANTC	2 cut(s)	461, 518
HpaII	CCGG	2 cut(s)	146, 305
HphI	GGTGA	3 cut(s)	253, 269, 294
Hpy166II	GTNNAC	1 cut(s)	403
Hpy188I	TCNGA	1 cut(s)	450
Hpy188III	TCNNGA	3 cut(s)	7, 214, 216
Hpy8I	GTNNAC	1 cut(s)	403
HpyAV	CCTTC	1 cut(s)	377
HpyCH4V	TGCA	6 cut(s)	55, 65, 283, 355, 397, 530
HpyF10VI	GCNNNNNNNGC	8 cut(s)	71, 326, 332, 335, 341, 361, 416, 539
Hsp92I	GRCGYC	1 cut(s)	74
Hsp92II	CATG	2 cut(s)	287, 509
Kzo9I	GATC	1 cut(s)	3
LguI	GCTCTTC	1 cut(s)	499
LmnI	GCTCC	1 cut(s)	373
Lsp1109I	GCAGC	3 cut(s)	313, 347, 542
LweI	GCATC	1 cut(s)	42
MaeI	CTAG	4 cut(s)	330, 420, 554, 559
MaeIII	GTNAC	1 cut(s)	257
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MboII	GAAGA	3 cut(s)	117, 291, 486
MluCI	AATT	6 cut(s)	82, 89, 312, 356, 453, 523
MlyI	GAGTC	2 cut(s)	455, 527
MmeI	TCCRAC	2 cut(s)	121, 428
MnlI	CCTC	4 cut(s)	123, 263, 418, 421
Mph1103I	ATGCAT	1 cut(s)	285
MseI	TTAA	1 cut(s)	476
MspI	CCGG	2 cut(s)	146, 305
MspR9I	CCNGG	2 cut(s)	71, 489
Mva1269I	GAATGC	1 cut(s)	65
MvaI	CCWGG	2 cut(s)	71, 489
MwoI	GCNNNNNNNGC	8 cut(s)	71, 326, 332, 335, 341, 361, 416, 539
NdeII	GATC	1 cut(s)	3
NlaIII	CATG	2 cut(s)	287, 509
NlaIV	GGNNCC	1 cut(s)	150
NmuCI	GTSAC	1 cut(s)	257
NsiI	ATGCAT	1 cut(s)	285
NspI	RCATGY	1 cut(s)	287
PaeR7I	CTCGAG	1 cut(s)	214
PciSI	GCTCTTC	1 cut(s)	499
PctI	GAATGC	1 cut(s)	65
PflMI	CCANNNNNTGG	1 cut(s)	170
PinAI	ACCGGT	1 cut(s)	304
PkrI	GCNGC	3 cut(s)	328, 337, 532
PleI	GAGTC	2 cut(s)	455, 526
PpsI	GAGTC	2 cut(s)	455, 526
Psp6I	CCWGG	2 cut(s)	69, 487
PspGI	CCWGG	2 cut(s)	69, 487
PspN4I	GGNNCC	1 cut(s)	150
PstI	CTGCAG	2 cut(s)	399, 532
SapI	GCTCTTC	1 cut(s)	499
SaqAI	TTAA	1 cut(s)	476
SatI	GCNGC	3 cut(s)	327, 336, 531
Sau3AI	GATC	1 cut(s)	3
SchI	GAGTC	2 cut(s)	455, 527
ScrFI	CCNGG	2 cut(s)	71, 489
SfaNI	GCATC	1 cut(s)	42
SfcI	CTRYAG	2 cut(s)	395, 528
Sfr274I	CTCGAG	1 cut(s)	214
SlaI	CTCGAG	1 cut(s)	214
SmlI	CTYRAG	1 cut(s)	214
SmoI	CTYRAG	1 cut(s)	214
Sse9I	AATT	6 cut(s)	82, 89, 312, 356, 453, 523
SsiI	CCGC	1 cut(s)	134
SspMI	CTAG	4 cut(s)	330, 420, 554, 559
StyD4I	CCNGG	2 cut(s)	69, 487
StyI	CCWWGG	1 cut(s)	321
TaqI	TCGA	2 cut(s)	128, 215
TaqII	GACCGA	1 cut(s)	103
TasI	AATT	6 cut(s)	82, 89, 312, 356, 453, 523
Tru1I	TTAA	1 cut(s)	476
Tru9I	TTAA	1 cut(s)	476
TscAI	CASTG	1 cut(s)	238
TseFI	GTSAC	1 cut(s)	257
TseI	GCWGC	3 cut(s)	326, 335, 530
Tsp45I	GTSAC	1 cut(s)	257
TspDTI	ATGAA	1 cut(s)	486
TspGWI	ACGGA	1 cut(s)	141
TspRI	CASTG	1 cut(s)	238
Van91I	CCANNNNNTGG	1 cut(s)	170
XceI	RCATGY	1 cut(s)	287
XcmI	CCANNNNNNNNNTGG	1 cut(s)	171
XhoI	CTCGAG	1 cut(s)	214
XspI	CTAG	4 cut(s)	330, 420, 554, 559
Zsp2I	ATGCAT	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.