Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0007366

Physical Location & Seq

Genomic Coordinates Forward (+)

24932902 .. 24936667

Gene Structure 3766 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g21991.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGTGAGGCTCACTGCGGATTTGATATGGAAAAGCCCTCACTTTTTCAATGCCCTTAAGGAGAGAGAGCTCGATCTTCGAGGTAATAAGATACCGGTAATCGAAAACTTGGGAGCTACAGAGGACCAATTTGACACCATTGATTTGTCTGACAATGAGATTGTTAAGCTGGAAAATTTGCCCTATCTTAATCGATTGGGTACTTTGATTATCAATAACAATAGAATTACCCGCATCAATCCCAACATTGGAGAGTTCTTGCCGAAGTTACATACTTTAGTGCTTACTAACAACAGGCTAGTCAACTTGGTTGAGATTGATCCTCTTGCGTCACTCTCGAAGTTGCAGTATCTTAGCCTGTTGGATAACAACATCACAAAGAAACCCAATTATAGGCTGTACGTGATTCACAAATTAAAGTCGCTTCGGGTTCTGGATTTTAAGAAGGTGAAAGATAAGGAGAGACTGGAAGCAAAAACTTTGTTTTCATCAAAAGAAGTTGAGGAGGAGACTAGGAAGGTATCCCCTAAGAAATTTGTGCCAGCTGAGGATACGGAAATGGCTGAGGAACAACAGACTCCGAAAGTGGTTGTGCCCACTCAGGATCAAATTAATGCTATCAAGGCTGCTATTGTGAACTCCCAGACTCTTGAAGAGGTTGCAAGACTTGAACAGGCACTGAAGTCAGGCCAGCTTCCTGCAGATTTGAAAATTATGGATGATGATACTCCAACCGACACTGGTAAAGACAAGGATGATGAAATGGTTGTTACCAACGAAAATGAGGCCAATGCTGAAGTAAAAGATGTGGAGGAACAGAAGAACAATGAATCAGAACCAATGGATCAGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008380 GO:0009266 GO:0009409 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0010467 GO:0015030 GO:0016070 GO:0016071 GO:0016604 GO:0031974 GO:0031981 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050896 GO:0070013 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

LRR_9

Protein Analysis

285

Amino Acids

32.44

Weight (kDa)

4.94

Isoelectric Point (pI)

30.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_9	PF14580	1 - 174	5.4e-81	Leucine-rich repeat
LRR_8	PF13855	65 - 125	8.4e-06	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007366)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09760
fragaria_vesca	FvH4_4g21991
malus_domestica	MD13G1135200.v1.1 MD16G1130900.v1.1
prunus_persica	Prupe.1G210100_v2.0.a1
pyrus_communis	pycom13g11800 pycom16g11540
rosa_chinensis	RchiOBHm_Chr4g0428191
rosa_laevigata	RLG00000007171
rosa_multiflora	Rmu_sc0000744.1_g000083 Rmu_sc0004940.1_g000005 Rmu_sc0005142.1_g000001 Rmu_sc0009599.1_g000004
rosa_roxburghii	Rroxscaffold_5G00369920
rosa_rugosa	Rorug04G0182200 Rorug04G0182300 Rorug04G0182400 Rorug04G0182500 Rorug04G0223400 Rorug04G0223500
rosa_samantha	Rh4AG280700 Rh4BG286200 Rh4CG301900
rosa_wichuraiana	Rw4G020900 Rw4G024380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	17, 232
AclWI	GGATC	3 cut(s)	314, 612, 852
AcsI	RAATTY	2 cut(s)	175, 533
AcuI	CTGAAG	2 cut(s)	701, 816
AfaI	GTAC	2 cut(s)	202, 401
AfiI	CCNNNNNNNGG	2 cut(s)	248, 393
AflII	CTTAAG	1 cut(s)	56
AgeI	ACCGGT	1 cut(s)	94
AgsI	TTSAA	4 cut(s)	49, 653, 671, 709
AluBI	AGCT	5 cut(s)	70, 116, 169, 545, 694
AluI	AGCT	5 cut(s)	70, 116, 169, 545, 694
Alw21I	GWGCWC	1 cut(s)	72
Alw26I	GTCTC	2 cut(s)	457, 503
AlwI	GGATC	3 cut(s)	314, 612, 852
AlwNI	CAGNNNCTG	1 cut(s)	679
AoxI	GGCC	2 cut(s)	688, 786
ApeKI	GCWGC	1 cut(s)	626
ApoI	RAATTY	2 cut(s)	175, 533
AseI	ATTAAT	1 cut(s)	612
AsiGI	ACCGGT	1 cut(s)	94
AspS9I	GGNCC	1 cut(s)	124
AsuHPI	GGTGA	2 cut(s)	16, 460
AvaII	GGWCC	1 cut(s)	124
BaeGI	GKGCMC	1 cut(s)	597
BanII	GRGCYC	1 cut(s)	72
Bbv12I	GWGCWC	1 cut(s)	72
BbvCI	CCTCAGC	2 cut(s)	546, 564
BbvI	GCAGC	1 cut(s)	613
BciVI	GTATCC	2 cut(s)	532, 544
BcoDI	GTCTC	2 cut(s)	457, 503
BfaI	CTAG	2 cut(s)	299, 513
BfmI	CTRYAG	2 cut(s)	117, 699
BfrI	CTTAAG	1 cut(s)	56
BfuI	GTATCC	2 cut(s)	532, 544
BisI	GCNGC	1 cut(s)	627
BlsI	GCNGC	1 cut(s)	628
Bme18I	GGWCC	1 cut(s)	124
BmgT120I	GGNCC	1 cut(s)	124
BmsI	GCATC	1 cut(s)	243
Bpu10I	CCTNAGC	2 cut(s)	546, 564
Bsa29I	ATCGAT	1 cut(s)	193
BsaAI	YACGTR	1 cut(s)	403
BsaWI	WCCGGW	1 cut(s)	94
Bsc4I	CCNNNNNNNGG	2 cut(s)	248, 393
Bse118I	RCCGGY	1 cut(s)	94
Bse1I	ACTGG	2 cut(s)	471, 745
BseCI	ATCGAT	1 cut(s)	193
BseGI	GGATG	2 cut(s)	724, 760
BseLI	CCNNNNNNNGG	2 cut(s)	248, 393
BseMII	CTCAG	3 cut(s)	537, 555, 614
BseNI	ACTGG	2 cut(s)	471, 745
BseRI	GAGGAG	2 cut(s)	518, 521
BseSI	GKGCMC	1 cut(s)	597
BseXI	GCAGC	1 cut(s)	613
BshFI	GGCC	2 cut(s)	690, 788
BshTI	ACCGGT	1 cut(s)	94
BshVI	ATCGAT	1 cut(s)	193
BsiHKAI	GWGCWC	1 cut(s)	72
BsiSI	CCGG	1 cut(s)	95
BslI	CCNNNNNNNGG	2 cut(s)	248, 393
BsmAI	GTCTC	2 cut(s)	457, 503
BsnI	GGCC	2 cut(s)	690, 788
Bsp1286I	GDGCHC	2 cut(s)	72, 597
Bsp143I	GATC	4 cut(s)	73, 319, 604, 844
BspACI	CCGC	2 cut(s)	17, 232
BspANI	GGCC	2 cut(s)	690, 788
BspCNI	CTCAG	3 cut(s)	538, 556, 613
BspDI	ATCGAT	1 cut(s)	193
BspMAI	CTGCAG	1 cut(s)	703
BspPI	GGATC	3 cut(s)	314, 612, 852
BspTI	CTTAAG	1 cut(s)	56
BsrFI	RCCGGY	1 cut(s)	94
BsrI	ACTGG	2 cut(s)	471, 745
BssAI	RCCGGY	1 cut(s)	94
BssMI	GATC	4 cut(s)	73, 319, 604, 844
Bst6I	CTCTTC	1 cut(s)	648
BstAFI	CTTAAG	1 cut(s)	56
BstBAI	YACGTR	1 cut(s)	403
BstC8I	GCNNGC	2 cut(s)	543, 692
BstDEI	CTNAG	5 cut(s)	353, 528, 546, 564, 600
BstF5I	GGATG	2 cut(s)	724, 760
BstKTI	GATC	4 cut(s)	76, 322, 607, 847
BstMAI	GTCTC	2 cut(s)	457, 503
BstMBI	GATC	4 cut(s)	73, 319, 604, 844
BstMWI	GCNNNNNNNGC	1 cut(s)	623
BstSFI	CTRYAG	2 cut(s)	117, 699
BstSLI	GKGCMC	1 cut(s)	597
BstV1I	GCAGC	1 cut(s)	613
Bsu15I	ATCGAT	1 cut(s)	193
BsuI	GTATCC	2 cut(s)	532, 544
BsuRI	GGCC	2 cut(s)	690, 788
BsuTUI	ATCGAT	1 cut(s)	193
BtsCI	GGATG	2 cut(s)	724, 760
BtsI	GCAGTG	1 cut(s)	12
BtsIMutI	CAGTG	3 cut(s)	12, 677, 738
Cac8I	GCNNGC	2 cut(s)	543, 692
CaiI	CAGNNNCTG	1 cut(s)	679
Cfr10I	RCCGGY	1 cut(s)	94
Cfr13I	GGNCC	1 cut(s)	124
ClaI	ATCGAT	1 cut(s)	193
CseI	GACGC	1 cut(s)	318
Csp6I	GTAC	2 cut(s)	201, 400
CspAI	ACCGGT	1 cut(s)	94
CviQI	GTAC	2 cut(s)	201, 400
DdeI	CTNAG	5 cut(s)	353, 528, 546, 564, 600
DpnI	GATC	4 cut(s)	75, 321, 606, 846
DpnII	GATC	4 cut(s)	73, 319, 604, 844
Eam1104I	CTCTTC	1 cut(s)	648
EarI	CTCTTC	1 cut(s)	648
Ecl136II	GAGCTC	1 cut(s)	70
Eco24I	GRGCYC	1 cut(s)	72
Eco47I	GGWCC	1 cut(s)	124
Eco53kI	GAGCTC	1 cut(s)	70
Eco57I	CTGAAG	2 cut(s)	701, 816
EcoICRI	GAGCTC	1 cut(s)	70
EcoT38I	GRGCYC	1 cut(s)	72
FaiI	YATR	4 cut(s)	28, 273, 393, 716
FauI	CCCGC	1 cut(s)	239
Fnu4HI	GCNGC	1 cut(s)	627
FokI	GGATG	2 cut(s)	731, 767
FriOI	GRGCYC	1 cut(s)	72
Fsp4HI	GCNGC	1 cut(s)	627
FspBI	CTAG	2 cut(s)	299, 513
GluI	GCNGC	1 cut(s)	627
HaeIII	GGCC	2 cut(s)	690, 788
HapII	CCGG	1 cut(s)	95
HgaI	GACGC	1 cut(s)	318
HincII	GTYRAC	1 cut(s)	304
HindII	GTYRAC	1 cut(s)	304
HinfI	GANTC	4 cut(s)	406, 577, 646, 830
HpaII	CCGG	1 cut(s)	95
HphI	GGTGA	2 cut(s)	16, 460
Hpy166II	GTNNAC	2 cut(s)	304, 637
Hpy188I	TCNGA	3 cut(s)	151, 582, 835
Hpy188III	TCNNGA	5 cut(s)	337, 434, 602, 650, 848
Hpy8I	GTNNAC	2 cut(s)	304, 637
HpyAV	CCTTC	2 cut(s)	439, 511
HpyCH4IV	ACGT	1 cut(s)	402
HpyCH4V	TGCA	3 cut(s)	346, 662, 701
HpyF10VI	GCNNNNNNNGC	1 cut(s)	623
HpyF3I	CTNAG	5 cut(s)	353, 528, 546, 564, 600
HpySE526I	ACGT	1 cut(s)	402
Kzo9I	GATC	4 cut(s)	73, 319, 604, 844
LmnI	GCTCC	1 cut(s)	113
Lsp1109I	GCAGC	1 cut(s)	613
LweI	GCATC	1 cut(s)	243
MaeI	CTAG	2 cut(s)	299, 513
MaeII	ACGT	1 cut(s)	402
MaeIII	GTNAC	3 cut(s)	267, 330, 769
MalI	GATC	4 cut(s)	75, 321, 606, 846
MboI	GATC	4 cut(s)	73, 319, 604, 844
MboII	GAAGA	3 cut(s)	68, 665, 832
MhlI	GDGCHC	2 cut(s)	72, 597
MluCI	AATT	8 cut(s)	128, 175, 225, 388, 413, 533, 609, 711
MlyI	GAGTC	2 cut(s)	571, 640
MmeI	TCCRAC	2 cut(s)	342, 755
MseI	TTAA	6 cut(s)	57, 165, 189, 416, 441, 612
MspA1I	CMGCKG	1 cut(s)	545
MspCI	CTTAAG	1 cut(s)	56
MspI	CCGG	1 cut(s)	95
MwoI	GCNNNNNNNGC	1 cut(s)	623
NdeII	GATC	4 cut(s)	73, 319, 604, 844
NmuCI	GTSAC	1 cut(s)	330
PfeI	GAWTC	2 cut(s)	406, 830
PinAI	ACCGGT	1 cut(s)	94
PkrI	GCNGC	1 cut(s)	628
PleI	GAGTC	2 cut(s)	571, 640
PpsI	GAGTC	2 cut(s)	571, 640
Ppu21I	YACGTR	1 cut(s)	403
PshBI	ATTAAT	1 cut(s)	612
Psp124BI	GAGCTC	1 cut(s)	72
PspPI	GGNCC	1 cut(s)	124
PstI	CTGCAG	1 cut(s)	703
PstNI	CAGNNNCTG	1 cut(s)	679
PvuII	CAGCTG	1 cut(s)	545
RsaI	GTAC	2 cut(s)	202, 401
RsaNI	GTAC	2 cut(s)	201, 400
SacI	GAGCTC	1 cut(s)	72
SaqAI	TTAA	6 cut(s)	57, 165, 189, 416, 441, 612
SatI	GCNGC	1 cut(s)	627
Sau3AI	GATC	4 cut(s)	73, 319, 604, 844
Sau96I	GGNCC	1 cut(s)	124
SchI	GAGTC	2 cut(s)	571, 640
SduI	GDGCHC	2 cut(s)	72, 597
SfaNI	GCATC	1 cut(s)	243
SfcI	CTRYAG	2 cut(s)	117, 699
SinI	GGWCC	1 cut(s)	124
SmlI	CTYRAG	1 cut(s)	56
SmoI	CTYRAG	1 cut(s)	56
Sse9I	AATT	8 cut(s)	128, 175, 225, 388, 413, 533, 609, 711
SsiI	CCGC	2 cut(s)	17, 232
SspMI	CTAG	2 cut(s)	299, 513
SstI	GAGCTC	1 cut(s)	72
TaiI	ACGT	1 cut(s)	405
TaqI	TCGA	5 cut(s)	72, 79, 102, 193, 338
TasI	AATT	8 cut(s)	128, 175, 225, 388, 413, 533, 609, 711
TfiI	GAWTC	2 cut(s)	406, 830
Tru1I	TTAA	6 cut(s)	57, 165, 189, 416, 441, 612
Tru9I	TTAA	6 cut(s)	57, 165, 189, 416, 441, 612
TscAI	CASTG	3 cut(s)	19, 684, 745
TseFI	GTSAC	1 cut(s)	330
TseI	GCWGC	1 cut(s)	626
Tsp45I	GTSAC	1 cut(s)	330
TspDTI	ATGAA	3 cut(s)	477, 774, 843
TspGWI	ACGGA	1 cut(s)	569
TspRI	CASTG	3 cut(s)	19, 684, 745
Vha464I	CTTAAG	1 cut(s)	56
VpaK11BI	GGWCC	1 cut(s)	124
VspI	ATTAAT	1 cut(s)	612
XapI	RAATTY	2 cut(s)	175, 533
XspI	CTAG	2 cut(s)	299, 513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.