Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0007366

Physical Location & Seq

Genomic Coordinates Forward (+)

56240531 .. 56244162

Gene Structure 3632 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG301900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGGTGAGGCTGACTGCAGATTTGATATGGAAAAGCCCGCACTTTTTCAATGCGCTTAAGGAGAGAGAGCTGGATCTTCGAGGTAATAAGATACCTGTTATCGAAAACTTGGGAGCTACAGAGGACCAATTTGACACCATTGATTTGTCTGACAATGAAATTGTGAAGCTGGAAAACTTGCCCTATCTTAATCGTTTGGGTACTTTGATTATCAATAACAATAGAATTACCCGTATCAATTCCAACATTGGAGAGTTCTTGCCAAAGTTACATACTTTAGTACTTACCAACAACAGGCTAGTGAACTTGGTAGAGATTGATCCTCTTGCATCCCTTTCAAAGTTGCAGTATCTTAGCCTGTTGGATAACAACATCACAAAGAAACCCAATTATAGGCTGTACGTGATTCACAAATTAAAGTCGCTTCGGGTTCTGGATTTTAAGAAAGTGAAAGATAAGGAGAGATTGGAAGCAAAAACTTTGTTTGCATCTAAAGAAGTTGAGGAGGAGGCCAGAAAGGTATCCCCAAAGAAATTTGTGCCAGCTGAGGATACGGAAATGGCCGAGGAACAACAGACTCCAAAAGTGGTTGCCCCCACTCAGGACCAAATTAATGCTATCAAGGCTGCCATAGTGAATTCTCAGACTCTTGAAGAGGTTGCAAGACTTGAACAGGCACTGAAGTCAGGTCAGCTTCCTGCAGATTTGAAAATTTTGGATGAGGATACTCCAATGAATACTGTTAAAGACAAGGATGATGAAATGGCTGTAACTAATGAAAATGAGGCCAATGTTGAAGTAAAAGATGTGGAGGAACAGAAGAACAATGAAGCAGAATCAATGGATCAGGTATTTTACGTTTCCTTTAACTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008380 GO:0009266 GO:0009409 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0010467 GO:0015030 GO:0016070 GO:0016071 GO:0016604 GO:0031974 GO:0031981 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050896 GO:0070013 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

LRR_9

Protein Analysis

291

Amino Acids

33.23

Weight (kDa)

5.02

Isoelectric Point (pI)

30.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_9	PF14580	1 - 174	3.4e-81	Leucine-rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0007366)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09760
fragaria_vesca	FvH4_4g21991
malus_domestica	MD13G1135200.v1.1 MD16G1130900.v1.1
prunus_persica	Prupe.1G210100_v2.0.a1
pyrus_communis	pycom13g11800 pycom16g11540
rosa_chinensis	RchiOBHm_Chr4g0428191
rosa_laevigata	RLG00000007171
rosa_multiflora	Rmu_sc0000744.1_g000083 Rmu_sc0004940.1_g000005 Rmu_sc0005142.1_g000001 Rmu_sc0009599.1_g000004
rosa_roxburghii	Rroxscaffold_5G00369920
rosa_rugosa	Rorug04G0182200 Rorug04G0182300 Rorug04G0182400 Rorug04G0182500 Rorug04G0223400 Rorug04G0223500
rosa_samantha	Rh4AG280700 Rh4BG286200 Rh4CG301900
rosa_wichuraiana	Rw4G020900 Rw4G024380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	38
AclWI	GGATC	3 cut(s)	81, 314, 852
AcoI	YGGCCR	1 cut(s)	561
AcsI	RAATTY	3 cut(s)	533, 637, 711
AcuI	CTGAAG	1 cut(s)	701
AfaI	GTAC	3 cut(s)	202, 282, 401
AfiI	CCNNNNNNNGG	3 cut(s)	294, 393, 601
AflII	CTTAAG	1 cut(s)	56
AgsI	TTSAA	6 cut(s)	49, 339, 653, 671, 709, 797
AluBI	AGCT	5 cut(s)	70, 116, 169, 545, 694
AluI	AGCT	5 cut(s)	70, 116, 169, 545, 694
AlwI	GGATC	3 cut(s)	81, 314, 852
AlwNI	CAGNNNCTG	1 cut(s)	679
AoxI	GGCC	3 cut(s)	510, 561, 786
ApeKI	GCWGC	1 cut(s)	626
ApoI	RAATTY	3 cut(s)	533, 637, 711
ArsI	GACNNNNNNTTYG	1 cut(s)	36
AseI	ATTAAT	1 cut(s)	612
AspLEI	GCGC	1 cut(s)	55
AspS9I	GGNCC	2 cut(s)	124, 604
AsuHPI	GGTGA	1 cut(s)	16
AvaII	GGWCC	2 cut(s)	124, 604
BbvCI	CCTCAGC	1 cut(s)	546
BbvI	GCAGC	1 cut(s)	613
BciVI	GTATCC	3 cut(s)	532, 544, 718
BfaI	CTAG	1 cut(s)	299
BfmI	CTRYAG	3 cut(s)	15, 117, 699
BfrI	CTTAAG	1 cut(s)	56
BfuI	GTATCC	3 cut(s)	532, 544, 718
BisI	GCNGC	1 cut(s)	627
BlsI	GCNGC	1 cut(s)	628
BmcAI	AGTACT	1 cut(s)	282
Bme18I	GGWCC	2 cut(s)	124, 604
BmgT120I	GGNCC	2 cut(s)	124, 604
BmsI	GCATC	2 cut(s)	338, 497
Bpu10I	CCTNAGC	1 cut(s)	546
BsaAI	YACGTR	1 cut(s)	403
BsaJI	CCNNGG	1 cut(s)	564
Bsc4I	CCNNNNNNNGG	3 cut(s)	294, 393, 601
BseDI	CCNNGG	1 cut(s)	564
BseGI	GGATG	3 cut(s)	329, 724, 760
BseLI	CCNNNNNNNGG	3 cut(s)	294, 393, 601
BseMII	CTCAG	3 cut(s)	537, 614, 656
BseRI	GAGGAG	2 cut(s)	518, 521
BseXI	GCAGC	1 cut(s)	613
BshFI	GGCC	3 cut(s)	512, 563, 788
BslI	CCNNNNNNNGG	3 cut(s)	294, 393, 601
BsnI	GGCC	3 cut(s)	512, 563, 788
Bsp143I	GATC	3 cut(s)	73, 319, 844
BspACI	CCGC	1 cut(s)	38
BspANI	GGCC	3 cut(s)	512, 563, 788
BspCNI	CTCAG	3 cut(s)	538, 613, 655
BspMAI	CTGCAG	2 cut(s)	19, 703
BspPI	GGATC	3 cut(s)	81, 314, 852
BspTI	CTTAAG	1 cut(s)	56
BssECI	CCNNGG	1 cut(s)	564
BssMI	GATC	3 cut(s)	73, 319, 844
Bst4CI	ACNGT	2 cut(s)	742, 872
Bst6I	CTCTTC	1 cut(s)	648
BstAFI	CTTAAG	1 cut(s)	56
BstBAI	YACGTR	1 cut(s)	403
BstC8I	GCNNGC	2 cut(s)	38, 543
BstDEI	CTNAG	4 cut(s)	353, 546, 600, 642
BstF5I	GGATG	3 cut(s)	329, 724, 760
BstHHI	GCGC	1 cut(s)	55
BstKTI	GATC	3 cut(s)	76, 322, 847
BstMBI	GATC	3 cut(s)	73, 319, 844
BstMWI	GCNNNNNNNGC	1 cut(s)	623
BstSFI	CTRYAG	3 cut(s)	15, 117, 699
BstV1I	GCAGC	1 cut(s)	613
BstX2I	RGATCY	1 cut(s)	73
BstYI	RGATCY	1 cut(s)	73
BsuI	GTATCC	3 cut(s)	532, 544, 718
BsuRI	GGCC	3 cut(s)	512, 563, 788
BtsCI	GGATG	3 cut(s)	329, 724, 760
BtsIMutI	CAGTG	1 cut(s)	677
Cac8I	GCNNGC	2 cut(s)	38, 543
CaiI	CAGNNNCTG	1 cut(s)	679
CfoI	GCGC	1 cut(s)	55
Cfr13I	GGNCC	2 cut(s)	124, 604
Csp6I	GTAC	3 cut(s)	201, 281, 400
CviQI	GTAC	3 cut(s)	201, 281, 400
DdeI	CTNAG	4 cut(s)	353, 546, 600, 642
DpnI	GATC	3 cut(s)	75, 321, 846
DpnII	GATC	3 cut(s)	73, 319, 844
EaeI	YGGCCR	1 cut(s)	561
Eam1104I	CTCTTC	1 cut(s)	648
EarI	CTCTTC	1 cut(s)	648
Eco47I	GGWCC	2 cut(s)	124, 604
Eco57I	CTGAAG	1 cut(s)	701
EcoRI	GAATTC	1 cut(s)	637
FaiI	YATR	4 cut(s)	28, 273, 393, 632
FauI	CCCGC	1 cut(s)	45
Fnu4HI	GCNGC	1 cut(s)	627
FokI	GGATG	3 cut(s)	316, 731, 767
Fsp4HI	GCNGC	1 cut(s)	627
FspBI	CTAG	1 cut(s)	299
GlaI	GCGC	1 cut(s)	54
GluI	GCNGC	1 cut(s)	627
HaeIII	GGCC	3 cut(s)	512, 563, 788
HhaI	GCGC	1 cut(s)	55
Hin6I	GCGC	1 cut(s)	53
HinP1I	GCGC	1 cut(s)	53
HinfI	GANTC	4 cut(s)	406, 577, 646, 836
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	1 cut(s)	304
Hpy188I	TCNGA	2 cut(s)	151, 645
Hpy188III	TCNNGA	3 cut(s)	434, 602, 650
Hpy8I	GTNNAC	1 cut(s)	304
HpyCH4III	ACNGT	2 cut(s)	742, 872
HpyCH4IV	ACGT	2 cut(s)	402, 858
HpyCH4V	TGCA	6 cut(s)	17, 329, 346, 488, 662, 701
HpyF10VI	GCNNNNNNNGC	1 cut(s)	623
HpyF3I	CTNAG	4 cut(s)	353, 546, 600, 642
HpySE526I	ACGT	2 cut(s)	402, 858
HspAI	GCGC	1 cut(s)	53
Kzo9I	GATC	3 cut(s)	73, 319, 844
LmnI	GCTCC	1 cut(s)	113
Lsp1109I	GCAGC	1 cut(s)	613
LweI	GCATC	2 cut(s)	338, 497
MaeI	CTAG	1 cut(s)	299
MaeII	ACGT	2 cut(s)	402, 858
MaeIII	GTNAC	2 cut(s)	267, 769
MalI	GATC	3 cut(s)	75, 321, 846
MboI	GATC	3 cut(s)	73, 319, 844
MboII	GAAGA	3 cut(s)	68, 665, 832
MflI	RGATCY	1 cut(s)	73
MlyI	GAGTC	2 cut(s)	571, 640
MmeI	TCCRAC	2 cut(s)	267, 342
MseI	TTAA	7 cut(s)	57, 189, 416, 441, 612, 744, 867
MspA1I	CMGCKG	1 cut(s)	545
MspCI	CTTAAG	1 cut(s)	56
MwoI	GCNNNNNNNGC	1 cut(s)	623
NdeII	GATC	3 cut(s)	73, 319, 844
NmeAIII	GCCGAG	1 cut(s)	589
PfeI	GAWTC	2 cut(s)	406, 836
PkrI	GCNGC	1 cut(s)	628
PleI	GAGTC	2 cut(s)	571, 640
PpsI	GAGTC	2 cut(s)	571, 640
Ppu21I	YACGTR	1 cut(s)	403
PshBI	ATTAAT	1 cut(s)	612
PspPI	GGNCC	2 cut(s)	124, 604
PstI	CTGCAG	2 cut(s)	19, 703
PstNI	CAGNNNCTG	1 cut(s)	679
PsuI	RGATCY	1 cut(s)	73
PvuII	CAGCTG	1 cut(s)	545
RsaI	GTAC	3 cut(s)	202, 282, 401
RsaNI	GTAC	3 cut(s)	201, 281, 400
SaqAI	TTAA	7 cut(s)	57, 189, 416, 441, 612, 744, 867
SatI	GCNGC	1 cut(s)	627
Sau3AI	GATC	3 cut(s)	73, 319, 844
Sau96I	GGNCC	2 cut(s)	124, 604
ScaI	AGTACT	1 cut(s)	282
SchI	GAGTC	2 cut(s)	571, 640
SfaNI	GCATC	2 cut(s)	338, 497
SfcI	CTRYAG	3 cut(s)	15, 117, 699
SinI	GGWCC	2 cut(s)	124, 604
SmlI	CTYRAG	1 cut(s)	56
SmoI	CTYRAG	1 cut(s)	56
SsiI	CCGC	1 cut(s)	38
SspMI	CTAG	1 cut(s)	299
TaaI	ACNGT	2 cut(s)	742, 872
TaiI	ACGT	2 cut(s)	405, 861
TaqI	TCGA	2 cut(s)	79, 102
TatI	WGTACW	1 cut(s)	280
TfiI	GAWTC	2 cut(s)	406, 836
Tru1I	TTAA	7 cut(s)	57, 189, 416, 441, 612, 744, 867
Tru9I	TTAA	7 cut(s)	57, 189, 416, 441, 612, 744, 867
TscAI	CASTG	1 cut(s)	684
TseI	GCWGC	1 cut(s)	626
TspDTI	ATGAA	5 cut(s)	171, 749, 774, 792, 843
TspGWI	ACGGA	1 cut(s)	569
TspRI	CASTG	1 cut(s)	684
Vha464I	CTTAAG	1 cut(s)	56
VpaK11BI	GGWCC	2 cut(s)	124, 604
VspI	ATTAAT	1 cut(s)	612
XapI	RAATTY	3 cut(s)	533, 637, 711
XspI	CTAG	1 cut(s)	299
ZrmI	AGTACT	1 cut(s)	282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.